Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13055

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13050 and CA264_13055 are separated by 328 nucleotidesCA264_13055 and CA264_13060 are separated by 388 nucleotidesCA264_13060 and CA264_13065 are separated by 117 nucleotides CA264_13050: CA264_13050 - hypothetical protein, at 3,041,709 to 3,042,986 _13050 CA264_13055: CA264_13055 - alpha-glucosidase, at 3,043,315 to 3,045,450 _13055 CA264_13060: CA264_13060 - tRNA-Ser, at 3,045,839 to 3,045,926 _13060 CA264_13065: CA264_13065 - DUF4153 domain-containing protein, at 3,046,044 to 3,047,912 _13065 Position (kb) 3043 3044 3045 3046Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3042.319 kb on + strand, within CA264_13050at 3042.411 kb on - strand, within CA264_13050at 3042.411 kb on - strand, within CA264_13050at 3042.423 kb on - strand, within CA264_13050at 3042.452 kb on + strand, within CA264_13050at 3042.452 kb on + strand, within CA264_13050at 3042.454 kb on + strand, within CA264_13050at 3042.454 kb on + strand, within CA264_13050at 3042.454 kb on + strand, within CA264_13050at 3042.552 kb on + strand, within CA264_13050at 3042.553 kb on - strand, within CA264_13050at 3042.638 kb on - strand, within CA264_13050at 3042.639 kb on + strand, within CA264_13050at 3042.640 kb on - strand, within CA264_13050at 3042.679 kb on - strand, within CA264_13050at 3042.726 kb on - strand, within CA264_13050at 3042.808 kb on + strand, within CA264_13050at 3042.808 kb on + strand, within CA264_13050at 3042.808 kb on + strand, within CA264_13050at 3042.808 kb on + strand, within CA264_13050at 3042.808 kb on + strand, within CA264_13050at 3042.809 kb on - strand, within CA264_13050at 3042.812 kb on + strand, within CA264_13050at 3042.813 kb on - strand, within CA264_13050at 3042.813 kb on - strand, within CA264_13050at 3042.813 kb on - strand, within CA264_13050at 3042.839 kb on + strand, within CA264_13050at 3042.985 kb on - strandat 3042.985 kb on - strandat 3043.155 kb on + strandat 3043.195 kb on + strandat 3043.195 kb on + strandat 3043.244 kb on - strandat 3043.244 kb on - strandat 3043.362 kb on + strandat 3043.366 kb on + strandat 3043.366 kb on + strandat 3043.366 kb on + strandat 3043.414 kb on - strandat 3043.443 kb on - strandat 3043.443 kb on - strandat 3043.487 kb on + strandat 3043.488 kb on - strandat 3043.502 kb on + strandat 3043.574 kb on - strand, within CA264_13055at 3043.577 kb on + strand, within CA264_13055at 3043.578 kb on - strand, within CA264_13055at 3043.578 kb on - strand, within CA264_13055at 3043.616 kb on - strand, within CA264_13055at 3043.620 kb on - strand, within CA264_13055at 3043.647 kb on - strand, within CA264_13055at 3043.650 kb on + strand, within CA264_13055at 3043.650 kb on + strand, within CA264_13055at 3043.651 kb on - strand, within CA264_13055at 3043.651 kb on - strand, within CA264_13055at 3043.709 kb on + strand, within CA264_13055at 3043.710 kb on - strand, within CA264_13055at 3043.710 kb on - strand, within CA264_13055at 3043.710 kb on - strand, within CA264_13055at 3043.748 kb on + strand, within CA264_13055at 3043.748 kb on + strand, within CA264_13055at 3043.749 kb on - strand, within CA264_13055at 3043.756 kb on + strand, within CA264_13055at 3043.757 kb on - strand, within CA264_13055at 3043.760 kb on + strand, within CA264_13055at 3043.760 kb on + strand, within CA264_13055at 3043.761 kb on - strand, within CA264_13055at 3043.761 kb on - strand, within CA264_13055at 3043.761 kb on - strand, within CA264_13055at 3043.761 kb on - strand, within CA264_13055at 3043.761 kb on - strand, within CA264_13055at 3043.763 kb on + strand, within CA264_13055at 3043.764 kb on - strand, within CA264_13055at 3043.788 kb on + strand, within CA264_13055at 3043.814 kb on + strand, within CA264_13055at 3043.817 kb on + strand, within CA264_13055at 3043.818 kb on - strand, within CA264_13055at 3043.849 kb on - strand, within CA264_13055at 3043.850 kb on + strand, within CA264_13055at 3043.850 kb on + strand, within CA264_13055at 3043.851 kb on - strand, within CA264_13055at 3043.971 kb on - strand, within CA264_13055at 3044.019 kb on + strand, within CA264_13055at 3044.027 kb on + strand, within CA264_13055at 3044.053 kb on + strand, within CA264_13055at 3044.054 kb on - strand, within CA264_13055at 3044.054 kb on - strand, within CA264_13055at 3044.058 kb on - strand, within CA264_13055at 3044.117 kb on + strand, within CA264_13055at 3044.118 kb on - strand, within CA264_13055at 3044.118 kb on - strand, within CA264_13055at 3044.186 kb on + strand, within CA264_13055at 3044.186 kb on + strand, within CA264_13055at 3044.473 kb on + strand, within CA264_13055at 3044.492 kb on + strand, within CA264_13055at 3044.516 kb on - strand, within CA264_13055at 3044.620 kb on + strand, within CA264_13055at 3044.620 kb on + strand, within CA264_13055at 3044.621 kb on - strand, within CA264_13055at 3044.621 kb on - strand, within CA264_13055at 3044.621 kb on - strand, within CA264_13055at 3044.730 kb on + strand, within CA264_13055at 3044.730 kb on + strand, within CA264_13055at 3044.731 kb on - strand, within CA264_13055at 3044.731 kb on - strand, within CA264_13055at 3044.736 kb on + strandat 3044.737 kb on - strand, within CA264_13055at 3044.801 kb on + strand, within CA264_13055at 3044.801 kb on + strand, within CA264_13055at 3044.802 kb on - strand, within CA264_13055at 3044.802 kb on - strand, within CA264_13055at 3044.906 kb on - strand, within CA264_13055at 3044.920 kb on - strand, within CA264_13055at 3044.920 kb on - strand, within CA264_13055at 3044.925 kb on + strand, within CA264_13055at 3044.925 kb on + strand, within CA264_13055at 3044.926 kb on - strand, within CA264_13055at 3044.936 kb on + strand, within CA264_13055at 3044.937 kb on - strand, within CA264_13055at 3044.937 kb on - strand, within CA264_13055at 3044.951 kb on + strand, within CA264_13055at 3044.995 kb on - strand, within CA264_13055at 3045.152 kb on + strand, within CA264_13055at 3045.277 kb on + strandat 3045.309 kb on + strandat 3045.310 kb on - strandat 3045.312 kb on - strandat 3045.316 kb on + strandat 3045.316 kb on + strandat 3045.316 kb on + strandat 3045.317 kb on - strandat 3045.317 kb on - strandat 3045.351 kb on + strandat 3045.412 kb on - strandat 3045.479 kb on - strandat 3045.502 kb on - strandat 3045.502 kb on - strandat 3045.502 kb on - strandat 3045.504 kb on - strandat 3045.504 kb on - strandat 3045.543 kb on - strandat 3045.588 kb on - strandat 3045.641 kb on - strandat 3045.681 kb on + strandat 3045.681 kb on + strandat 3045.689 kb on + strandat 3045.828 kb on + strandat 3045.999 kb on + strandat 3046.000 kb on - strandat 3046.108 kb on + strandat 3046.131 kb on + strandat 3046.186 kb on - strandat 3046.186 kb on - strandat 3046.243 kb on - strand, within CA264_13065at 3046.267 kb on + strand, within CA264_13065at 3046.274 kb on + strand, within CA264_13065at 3046.322 kb on + strand, within CA264_13065at 3046.322 kb on + strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.325 kb on - strand, within CA264_13065at 3046.325 kb on - strand, within CA264_13065at 3046.350 kb on + strand, within CA264_13065at 3046.350 kb on + strand, within CA264_13065at 3046.351 kb on - strand, within CA264_13065at 3046.351 kb on - strand, within CA264_13065at 3046.444 kb on + strand, within CA264_13065at 3046.445 kb on - strand, within CA264_13065at 3046.445 kb on - strand, within CA264_13065

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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3,042,319 + CA264_13050 0.48 +0.7
3,042,411 - CA264_13050 0.55 -1.0
3,042,411 - CA264_13050 0.55 +0.3
3,042,423 - CA264_13050 0.56 -0.5
3,042,452 + CA264_13050 0.58 -0.1
3,042,452 + CA264_13050 0.58 -2.1
3,042,454 + CA264_13050 0.58 -0.2
3,042,454 + CA264_13050 0.58 +0.6
3,042,454 + CA264_13050 0.58 -0.6
3,042,552 + CA264_13050 0.66 +0.5
3,042,553 - CA264_13050 0.66 -0.3
3,042,638 - CA264_13050 0.73 -0.6
3,042,639 + CA264_13050 0.73 -0.2
3,042,640 - CA264_13050 0.73 -0.6
3,042,679 - CA264_13050 0.76 +0.3
3,042,726 - CA264_13050 0.80 -0.6
3,042,808 + CA264_13050 0.86 -1.6
3,042,808 + CA264_13050 0.86 -1.0
3,042,808 + CA264_13050 0.86 -0.2
3,042,808 + CA264_13050 0.86 -0.7
3,042,808 + CA264_13050 0.86 -0.6
3,042,809 - CA264_13050 0.86 -0.2
3,042,812 + CA264_13050 0.86 -0.3
3,042,813 - CA264_13050 0.86 -0.2
3,042,813 - CA264_13050 0.86 +0.0
3,042,813 - CA264_13050 0.86 -1.2
3,042,839 + CA264_13050 0.88 +0.3
3,042,985 - -0.9
3,042,985 - +0.2
3,043,155 + +0.8
3,043,195 + +0.0
3,043,195 + -0.9
3,043,244 - +0.1
3,043,244 - -1.1
3,043,362 + -0.1
3,043,366 + -0.6
3,043,366 + +0.6
3,043,366 + +0.4
3,043,414 - +0.4
3,043,443 - +1.9
3,043,443 - +0.1
3,043,487 + +0.1
3,043,488 - +0.8
3,043,502 + -0.3
3,043,574 - CA264_13055 0.12 -0.0
3,043,577 + CA264_13055 0.12 +0.1
3,043,578 - CA264_13055 0.12 -0.3
3,043,578 - CA264_13055 0.12 -0.2
3,043,616 - CA264_13055 0.14 -0.1
3,043,620 - CA264_13055 0.14 -0.7
3,043,647 - CA264_13055 0.16 +0.7
3,043,650 + CA264_13055 0.16 +0.4
3,043,650 + CA264_13055 0.16 +0.1
3,043,651 - CA264_13055 0.16 -0.3
3,043,651 - CA264_13055 0.16 -0.6
3,043,709 + CA264_13055 0.18 -0.4
3,043,710 - CA264_13055 0.18 -0.3
3,043,710 - CA264_13055 0.18 -2.9
3,043,710 - CA264_13055 0.18 -0.2
3,043,748 + CA264_13055 0.20 -0.2
3,043,748 + CA264_13055 0.20 +0.2
3,043,749 - CA264_13055 0.20 -0.5
3,043,756 + CA264_13055 0.21 -0.6
3,043,757 - CA264_13055 0.21 -0.2
3,043,760 + CA264_13055 0.21 +0.4
3,043,760 + CA264_13055 0.21 -0.4
3,043,761 - CA264_13055 0.21 +0.1
3,043,761 - CA264_13055 0.21 +0.2
3,043,761 - CA264_13055 0.21 -0.1
3,043,761 - CA264_13055 0.21 -0.2
3,043,761 - CA264_13055 0.21 +0.6
3,043,763 + CA264_13055 0.21 -0.0
3,043,764 - CA264_13055 0.21 +0.3
3,043,788 + CA264_13055 0.22 -0.4
3,043,814 + CA264_13055 0.23 -0.4
3,043,817 + CA264_13055 0.24 -0.2
3,043,818 - CA264_13055 0.24 -0.3
3,043,849 - CA264_13055 0.25 +0.1
3,043,850 + CA264_13055 0.25 +0.8
3,043,850 + CA264_13055 0.25 -0.2
3,043,851 - CA264_13055 0.25 +1.5
3,043,971 - CA264_13055 0.31 -0.5
3,044,019 + CA264_13055 0.33 -0.2
3,044,027 + CA264_13055 0.33 -0.4
3,044,053 + CA264_13055 0.35 +1.1
3,044,054 - CA264_13055 0.35 -0.4
3,044,054 - CA264_13055 0.35 +0.3
3,044,058 - CA264_13055 0.35 +0.0
3,044,117 + CA264_13055 0.38 -0.7
3,044,118 - CA264_13055 0.38 +0.4
3,044,118 - CA264_13055 0.38 -0.1
3,044,186 + CA264_13055 0.41 -0.1
3,044,186 + CA264_13055 0.41 +0.4
3,044,473 + CA264_13055 0.54 +0.7
3,044,492 + CA264_13055 0.55 -1.6
3,044,516 - CA264_13055 0.56 +0.7
3,044,620 + CA264_13055 0.61 +0.0
3,044,620 + CA264_13055 0.61 -0.4
3,044,621 - CA264_13055 0.61 -0.3
3,044,621 - CA264_13055 0.61 +0.1
3,044,621 - CA264_13055 0.61 -0.8
3,044,730 + CA264_13055 0.66 -1.1
3,044,730 + CA264_13055 0.66 -0.4
3,044,731 - CA264_13055 0.66 +0.1
3,044,731 - CA264_13055 0.66 +1.0
3,044,736 + -0.2
3,044,737 - CA264_13055 0.67 -0.5
3,044,801 + CA264_13055 0.70 +0.2
3,044,801 + CA264_13055 0.70 +2.6
3,044,802 - CA264_13055 0.70 +0.2
3,044,802 - CA264_13055 0.70 +0.2
3,044,906 - CA264_13055 0.74 +0.0
3,044,920 - CA264_13055 0.75 -0.2
3,044,920 - CA264_13055 0.75 +0.8
3,044,925 + CA264_13055 0.75 +0.3
3,044,925 + CA264_13055 0.75 -0.7
3,044,926 - CA264_13055 0.75 +0.9
3,044,936 + CA264_13055 0.76 -1.3
3,044,937 - CA264_13055 0.76 +0.6
3,044,937 - CA264_13055 0.76 -0.1
3,044,951 + CA264_13055 0.77 -2.1
3,044,995 - CA264_13055 0.79 -0.4
3,045,152 + CA264_13055 0.86 -0.0
3,045,277 + +0.7
3,045,309 + -0.2
3,045,310 - -0.4
3,045,312 - -1.8
3,045,316 + +0.2
3,045,316 + -0.3
3,045,316 + +1.8
3,045,317 - +0.1
3,045,317 - -1.0
3,045,351 + +0.3
3,045,412 - +0.0
3,045,479 - +0.7
3,045,502 - -0.4
3,045,502 - +0.9
3,045,502 - -0.0
3,045,504 - +0.4
3,045,504 - +1.4
3,045,543 - -1.3
3,045,588 - +0.4
3,045,641 - +0.4
3,045,681 + +0.4
3,045,681 + -0.8
3,045,689 + -0.8
3,045,828 + +0.4
3,045,999 + -0.1
3,046,000 - -0.2
3,046,108 + +0.3
3,046,131 + -0.4
3,046,186 - -0.4
3,046,186 - +1.1
3,046,243 - CA264_13065 0.11 -0.1
3,046,267 + CA264_13065 0.12 -0.1
3,046,274 + CA264_13065 0.12 -0.7
3,046,322 + CA264_13065 0.15 +0.8
3,046,322 + CA264_13065 0.15 +0.7
3,046,323 - CA264_13065 0.15 -0.6
3,046,323 - CA264_13065 0.15 -0.2
3,046,323 - CA264_13065 0.15 -0.3
3,046,323 - CA264_13065 0.15 -0.8
3,046,325 - CA264_13065 0.15 -0.7
3,046,325 - CA264_13065 0.15 -1.0
3,046,350 + CA264_13065 0.16 -0.5
3,046,350 + CA264_13065 0.16 -1.5
3,046,351 - CA264_13065 0.16 -0.6
3,046,351 - CA264_13065 0.16 +0.7
3,046,444 + CA264_13065 0.21 -0.3
3,046,445 - CA264_13065 0.21 -0.3
3,046,445 - CA264_13065 0.21 +0.5

Or see this region's nucleotide sequence