Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12735

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12730 and CA264_12735 are separated by 39 nucleotidesCA264_12735 and CA264_12740 are separated by 14 nucleotides CA264_12730: CA264_12730 - sodium:solute symporter, at 2,967,299 to 2,968,777 _12730 CA264_12735: CA264_12735 - hypothetical protein, at 2,968,817 to 2,969,038 _12735 CA264_12740: CA264_12740 - multidrug ABC transporter ATP-binding protein, at 2,969,053 to 2,970,873 _12740 Position (kb) 2968 2969 2970Strain fitness (log2 ratio) -1 0 1at 2967.860 kb on - strand, within CA264_12730at 2967.908 kb on - strand, within CA264_12730at 2967.930 kb on + strand, within CA264_12730at 2967.930 kb on + strand, within CA264_12730at 2967.931 kb on - strand, within CA264_12730at 2967.931 kb on - strand, within CA264_12730at 2967.980 kb on - strand, within CA264_12730at 2967.992 kb on + strand, within CA264_12730at 2968.128 kb on + strand, within CA264_12730at 2968.129 kb on - strand, within CA264_12730at 2968.129 kb on - strand, within CA264_12730at 2968.176 kb on - strand, within CA264_12730at 2968.176 kb on - strand, within CA264_12730at 2968.281 kb on + strand, within CA264_12730at 2968.301 kb on - strand, within CA264_12730at 2968.304 kb on + strand, within CA264_12730at 2968.305 kb on - strand, within CA264_12730at 2968.305 kb on - strand, within CA264_12730at 2968.499 kb on - strand, within CA264_12730at 2968.517 kb on + strand, within CA264_12730at 2968.518 kb on - strand, within CA264_12730at 2968.538 kb on + strand, within CA264_12730at 2968.603 kb on - strand, within CA264_12730at 2968.620 kb on + strand, within CA264_12730at 2968.631 kb on + strandat 2968.659 kb on - strandat 2968.780 kb on + strandat 2968.797 kb on - strandat 2968.798 kb on + strandat 2968.798 kb on + strandat 2968.915 kb on - strand, within CA264_12735at 2968.922 kb on - strand, within CA264_12735at 2968.930 kb on - strand, within CA264_12735at 2968.973 kb on + strand, within CA264_12735at 2968.975 kb on + strand, within CA264_12735at 2968.984 kb on - strand, within CA264_12735at 2969.036 kb on + strandat 2969.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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2,967,860 - CA264_12730 0.38 -0.0
2,967,908 - CA264_12730 0.41 +0.1
2,967,930 + CA264_12730 0.43 -0.5
2,967,930 + CA264_12730 0.43 -0.0
2,967,931 - CA264_12730 0.43 -0.3
2,967,931 - CA264_12730 0.43 +1.4
2,967,980 - CA264_12730 0.46 +0.6
2,967,992 + CA264_12730 0.47 +0.4
2,968,128 + CA264_12730 0.56 -0.5
2,968,129 - CA264_12730 0.56 -0.3
2,968,129 - CA264_12730 0.56 +0.4
2,968,176 - CA264_12730 0.59 -0.4
2,968,176 - CA264_12730 0.59 -0.1
2,968,281 + CA264_12730 0.66 -1.0
2,968,301 - CA264_12730 0.68 +0.0
2,968,304 + CA264_12730 0.68 +0.8
2,968,305 - CA264_12730 0.68 +0.2
2,968,305 - CA264_12730 0.68 -0.4
2,968,499 - CA264_12730 0.81 -0.1
2,968,517 + CA264_12730 0.82 -0.1
2,968,518 - CA264_12730 0.82 -0.1
2,968,538 + CA264_12730 0.84 +0.4
2,968,603 - CA264_12730 0.88 -0.8
2,968,620 + CA264_12730 0.89 +0.6
2,968,631 + -0.4
2,968,659 - +0.6
2,968,780 + +0.3
2,968,797 - -0.4
2,968,798 + -0.0
2,968,798 + -0.4
2,968,915 - CA264_12735 0.44 +0.0
2,968,922 - CA264_12735 0.47 +0.1
2,968,930 - CA264_12735 0.51 +0.4
2,968,973 + CA264_12735 0.70 -0.0
2,968,975 + CA264_12735 0.71 +0.6
2,968,984 - CA264_12735 0.75 -0.6
2,969,036 + -0.6
2,969,046 - -0.5

Or see this region's nucleotide sequence