Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12600

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12590 and CA264_12595 are separated by 69 nucleotidesCA264_12595 and CA264_12600 are separated by 1 nucleotidesCA264_12600 and CA264_12605 are separated by 163 nucleotides CA264_12590: CA264_12590 - hypothetical protein, at 2,938,300 to 2,939,556 _12590 CA264_12595: CA264_12595 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 2,939,626 to 2,940,153 _12595 CA264_12600: CA264_12600 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 2,940,155 to 2,941,285 _12600 CA264_12605: CA264_12605 - stress protection protein MarC, at 2,941,449 to 2,942,069 _12605 Position (kb) 2940 2941 2942Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2939.164 kb on - strand, within CA264_12590at 2939.200 kb on - strand, within CA264_12590at 2939.243 kb on + strand, within CA264_12590at 2939.243 kb on + strand, within CA264_12590at 2939.243 kb on + strand, within CA264_12590at 2939.244 kb on - strand, within CA264_12590at 2939.244 kb on - strand, within CA264_12590at 2939.244 kb on - strand, within CA264_12590at 2939.252 kb on - strand, within CA264_12590at 2939.257 kb on - strand, within CA264_12590at 2939.303 kb on + strand, within CA264_12590at 2939.331 kb on + strand, within CA264_12590at 2939.332 kb on - strand, within CA264_12590at 2939.332 kb on - strand, within CA264_12590at 2939.332 kb on - strand, within CA264_12590at 2939.392 kb on - strand, within CA264_12590at 2939.431 kb on + strandat 2939.487 kb on + strandat 2939.487 kb on + strandat 2939.487 kb on + strandat 2939.530 kb on + strandat 2939.531 kb on - strandat 2939.571 kb on - strandat 2939.589 kb on + strandat 2939.594 kb on + strandat 2939.617 kb on + strandat 2939.618 kb on - strandat 2939.633 kb on - strandat 2939.653 kb on + strandat 2939.758 kb on + strand, within CA264_12595at 2939.759 kb on - strand, within CA264_12595at 2939.759 kb on - strand, within CA264_12595at 2939.869 kb on - strand, within CA264_12595at 2940.156 kb on + strandat 2940.156 kb on + strandat 2940.156 kb on + strandat 2940.288 kb on + strand, within CA264_12600at 2940.289 kb on - strand, within CA264_12600at 2940.346 kb on - strand, within CA264_12600at 2940.442 kb on - strand, within CA264_12600at 2940.451 kb on + strand, within CA264_12600at 2940.451 kb on + strand, within CA264_12600at 2940.451 kb on + strand, within CA264_12600at 2940.451 kb on + strand, within CA264_12600at 2940.452 kb on - strand, within CA264_12600at 2940.454 kb on - strand, within CA264_12600at 2940.484 kb on + strand, within CA264_12600at 2940.509 kb on + strand, within CA264_12600at 2940.589 kb on + strand, within CA264_12600at 2940.599 kb on + strand, within CA264_12600at 2940.621 kb on + strand, within CA264_12600at 2940.687 kb on - strand, within CA264_12600at 2940.896 kb on + strand, within CA264_12600at 2940.897 kb on - strand, within CA264_12600at 2940.897 kb on - strand, within CA264_12600at 2940.955 kb on - strand, within CA264_12600at 2941.107 kb on + strand, within CA264_12600at 2941.108 kb on - strand, within CA264_12600at 2941.141 kb on - strand, within CA264_12600at 2941.271 kb on + strandat 2941.271 kb on + strandat 2941.359 kb on + strandat 2941.360 kb on - strandat 2941.360 kb on - strandat 2941.362 kb on + strandat 2941.410 kb on - strandat 2941.414 kb on - strandat 2941.440 kb on + strandat 2941.458 kb on - strandat 2941.458 kb on - strandat 2941.582 kb on + strand, within CA264_12605at 2941.582 kb on + strand, within CA264_12605at 2941.584 kb on + strand, within CA264_12605at 2941.585 kb on - strand, within CA264_12605at 2941.585 kb on - strand, within CA264_12605at 2941.626 kb on + strand, within CA264_12605at 2941.627 kb on - strand, within CA264_12605at 2941.838 kb on + strand, within CA264_12605at 2941.840 kb on + strand, within CA264_12605at 2941.841 kb on - strand, within CA264_12605at 2941.900 kb on + strand, within CA264_12605at 2941.900 kb on + strand, within CA264_12605at 2941.901 kb on - strand, within CA264_12605at 2941.920 kb on + strand, within CA264_12605at 2941.949 kb on + strand, within CA264_12605at 2942.003 kb on + strand, within CA264_12605at 2942.129 kb on + strandat 2942.130 kb on - strandat 2942.132 kb on + strandat 2942.132 kb on + strandat 2942.133 kb on - strandat 2942.133 kb on - strandat 2942.144 kb on + strandat 2942.144 kb on + strandat 2942.149 kb on + strandat 2942.150 kb on - strandat 2942.152 kb on + strandat 2942.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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2,939,164 - CA264_12590 0.69 -0.3
2,939,200 - CA264_12590 0.72 -0.8
2,939,243 + CA264_12590 0.75 -2.4
2,939,243 + CA264_12590 0.75 +0.4
2,939,243 + CA264_12590 0.75 -1.3
2,939,244 - CA264_12590 0.75 -0.1
2,939,244 - CA264_12590 0.75 -0.3
2,939,244 - CA264_12590 0.75 +0.2
2,939,252 - CA264_12590 0.76 -1.0
2,939,257 - CA264_12590 0.76 -0.2
2,939,303 + CA264_12590 0.80 -0.2
2,939,331 + CA264_12590 0.82 +0.3
2,939,332 - CA264_12590 0.82 -0.3
2,939,332 - CA264_12590 0.82 +0.1
2,939,332 - CA264_12590 0.82 +0.1
2,939,392 - CA264_12590 0.87 +0.2
2,939,431 + -0.0
2,939,487 + +0.5
2,939,487 + -0.3
2,939,487 + +0.1
2,939,530 + -0.2
2,939,531 - -0.2
2,939,571 - -0.3
2,939,589 + -0.1
2,939,594 + -0.3
2,939,617 + +0.5
2,939,618 - +1.1
2,939,633 - -1.4
2,939,653 + +0.6
2,939,758 + CA264_12595 0.25 +0.1
2,939,759 - CA264_12595 0.25 +1.5
2,939,759 - CA264_12595 0.25 -0.1
2,939,869 - CA264_12595 0.46 +0.3
2,940,156 + -1.6
2,940,156 + -0.2
2,940,156 + -0.1
2,940,288 + CA264_12600 0.12 +0.1
2,940,289 - CA264_12600 0.12 +0.8
2,940,346 - CA264_12600 0.17 -0.6
2,940,442 - CA264_12600 0.25 -1.3
2,940,451 + CA264_12600 0.26 -0.3
2,940,451 + CA264_12600 0.26 +0.1
2,940,451 + CA264_12600 0.26 -0.7
2,940,451 + CA264_12600 0.26 -1.8
2,940,452 - CA264_12600 0.26 -0.6
2,940,454 - CA264_12600 0.26 -0.2
2,940,484 + CA264_12600 0.29 -1.1
2,940,509 + CA264_12600 0.31 -0.1
2,940,589 + CA264_12600 0.38 -0.6
2,940,599 + CA264_12600 0.39 -0.2
2,940,621 + CA264_12600 0.41 -0.9
2,940,687 - CA264_12600 0.47 +2.1
2,940,896 + CA264_12600 0.66 -0.5
2,940,897 - CA264_12600 0.66 +0.5
2,940,897 - CA264_12600 0.66 -0.9
2,940,955 - CA264_12600 0.71 +0.8
2,941,107 + CA264_12600 0.84 -1.2
2,941,108 - CA264_12600 0.84 -0.7
2,941,141 - CA264_12600 0.87 -1.5
2,941,271 + -0.4
2,941,271 + -0.2
2,941,359 + -0.9
2,941,360 - -0.6
2,941,360 - -2.1
2,941,362 + -1.8
2,941,410 - -3.0
2,941,414 - -0.2
2,941,440 + -2.0
2,941,458 - -0.3
2,941,458 - +0.7
2,941,582 + CA264_12605 0.21 -0.4
2,941,582 + CA264_12605 0.21 +0.7
2,941,584 + CA264_12605 0.22 -0.0
2,941,585 - CA264_12605 0.22 -0.7
2,941,585 - CA264_12605 0.22 +0.7
2,941,626 + CA264_12605 0.29 -0.5
2,941,627 - CA264_12605 0.29 +0.1
2,941,838 + CA264_12605 0.63 +0.6
2,941,840 + CA264_12605 0.63 +0.7
2,941,841 - CA264_12605 0.63 -0.0
2,941,900 + CA264_12605 0.73 -0.1
2,941,900 + CA264_12605 0.73 +0.3
2,941,901 - CA264_12605 0.73 +0.5
2,941,920 + CA264_12605 0.76 +0.2
2,941,949 + CA264_12605 0.81 +1.0
2,942,003 + CA264_12605 0.89 -0.2
2,942,129 + +0.7
2,942,130 - +0.5
2,942,132 + -0.3
2,942,132 + +0.1
2,942,133 - -0.2
2,942,133 - +0.6
2,942,144 + -0.2
2,942,144 + +0.3
2,942,149 + +0.1
2,942,150 - -0.2
2,942,152 + -0.5
2,942,262 + +0.6

Or see this region's nucleotide sequence