Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09255 and CA264_09260 are separated by 101 nucleotides CA264_09260 and CA264_09265 are separated by 162 nucleotides
CA264_09255: CA264_09255 - isocitrate lyase, at 2,164,710 to 2,165,990
_09255
CA264_09260: CA264_09260 - malate synthase A, at 2,166,092 to 2,167,690
_09260
CA264_09265: CA264_09265 - XRE family transcriptional regulator, at 2,167,853 to 2,169,328
_09265
Position (kb)
2166
2167
2168 Strain fitness (log2 ratio)
-2
-1
0
1 at 2165.097 kb on + strand, within CA264_09255 at 2165.176 kb on + strand, within CA264_09255 at 2165.176 kb on + strand, within CA264_09255 at 2165.257 kb on - strand, within CA264_09255 at 2165.259 kb on - strand, within CA264_09255 at 2165.466 kb on + strand, within CA264_09255 at 2165.523 kb on - strand, within CA264_09255 at 2165.566 kb on + strand, within CA264_09255 at 2165.567 kb on - strand, within CA264_09255 at 2165.567 kb on - strand, within CA264_09255 at 2165.598 kb on + strand, within CA264_09255 at 2165.598 kb on + strand, within CA264_09255 at 2165.599 kb on - strand, within CA264_09255 at 2165.599 kb on - strand, within CA264_09255 at 2165.683 kb on + strand, within CA264_09255 at 2165.684 kb on - strand, within CA264_09255 at 2165.716 kb on - strand, within CA264_09255 at 2165.734 kb on + strand, within CA264_09255 at 2165.734 kb on + strand, within CA264_09255 at 2165.735 kb on - strand, within CA264_09255 at 2165.793 kb on + strand, within CA264_09255 at 2165.806 kb on + strand, within CA264_09255 at 2165.862 kb on - strand, within CA264_09255 at 2165.862 kb on - strand, within CA264_09255 at 2165.863 kb on + strand at 2165.868 kb on + strand at 2165.869 kb on - strand at 2165.892 kb on + strand at 2165.893 kb on - strand at 2165.910 kb on - strand at 2165.910 kb on - strand at 2165.910 kb on - strand at 2165.911 kb on + strand at 2165.911 kb on + strand at 2165.912 kb on - strand at 2165.912 kb on - strand at 2165.996 kb on + strand at 2165.996 kb on + strand at 2165.997 kb on - strand at 2165.997 kb on - strand at 2166.000 kb on + strand at 2166.008 kb on - strand at 2166.102 kb on + strand at 2166.102 kb on + strand at 2166.102 kb on + strand at 2166.189 kb on + strand at 2166.189 kb on + strand at 2166.190 kb on - strand at 2166.190 kb on - strand at 2166.224 kb on - strand at 2166.244 kb on + strand at 2166.324 kb on - strand, within CA264_09260 at 2166.324 kb on - strand, within CA264_09260 at 2166.414 kb on + strand, within CA264_09260 at 2166.414 kb on + strand, within CA264_09260 at 2166.415 kb on - strand, within CA264_09260 at 2166.415 kb on - strand, within CA264_09260 at 2166.418 kb on + strand, within CA264_09260 at 2166.418 kb on + strand, within CA264_09260 at 2166.418 kb on + strand, within CA264_09260 at 2166.419 kb on - strand, within CA264_09260 at 2166.419 kb on - strand, within CA264_09260 at 2166.503 kb on + strand, within CA264_09260 at 2166.503 kb on + strand, within CA264_09260 at 2166.770 kb on - strand, within CA264_09260 at 2166.770 kb on - strand, within CA264_09260 at 2166.770 kb on - strand, within CA264_09260 at 2166.772 kb on - strand, within CA264_09260 at 2166.782 kb on - strand, within CA264_09260 at 2166.800 kb on + strand, within CA264_09260 at 2166.801 kb on - strand, within CA264_09260 at 2166.824 kb on + strand, within CA264_09260 at 2166.825 kb on - strand, within CA264_09260 at 2166.863 kb on + strand, within CA264_09260 at 2166.899 kb on - strand, within CA264_09260 at 2167.061 kb on - strand, within CA264_09260 at 2167.123 kb on - strand, within CA264_09260 at 2167.151 kb on + strand, within CA264_09260 at 2167.151 kb on + strand, within CA264_09260 at 2167.152 kb on - strand, within CA264_09260 at 2167.152 kb on - strand, within CA264_09260 at 2167.152 kb on - strand, within CA264_09260 at 2167.511 kb on + strand, within CA264_09260 at 2167.511 kb on + strand, within CA264_09260 at 2167.512 kb on - strand, within CA264_09260 at 2167.631 kb on + strand at 2167.632 kb on - strand at 2167.690 kb on + strand at 2167.831 kb on + strand at 2167.831 kb on + strand at 2167.832 kb on - strand at 2168.051 kb on + strand, within CA264_09265 at 2168.051 kb on + strand, within CA264_09265 at 2168.052 kb on - strand, within CA264_09265 at 2168.052 kb on - strand, within CA264_09265 at 2168.052 kb on - strand, within CA264_09265 at 2168.058 kb on - strand, within CA264_09265 at 2168.198 kb on - strand, within CA264_09265 at 2168.289 kb on - strand, within CA264_09265 at 2168.309 kb on + strand, within CA264_09265 at 2168.309 kb on + strand, within CA264_09265 at 2168.355 kb on - strand, within CA264_09265 at 2168.406 kb on + strand, within CA264_09265 at 2168.407 kb on - strand, within CA264_09265 at 2168.580 kb on + strand, within CA264_09265 at 2168.600 kb on + strand, within CA264_09265 at 2168.653 kb on + strand, within CA264_09265 at 2168.654 kb on - strand, within CA264_09265 at 2168.663 kb on + strand, within CA264_09265
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 2,165,097 + CA264_09255 0.30 -0.3 2,165,176 + CA264_09255 0.36 -0.2 2,165,176 + CA264_09255 0.36 +0.0 2,165,257 - CA264_09255 0.43 +1.5 2,165,259 - CA264_09255 0.43 +0.2 2,165,466 + CA264_09255 0.59 -0.7 2,165,523 - CA264_09255 0.63 +0.6 2,165,566 + CA264_09255 0.67 -0.4 2,165,567 - CA264_09255 0.67 -0.3 2,165,567 - CA264_09255 0.67 +1.1 2,165,598 + CA264_09255 0.69 +0.6 2,165,598 + CA264_09255 0.69 -0.0 2,165,599 - CA264_09255 0.69 -0.0 2,165,599 - CA264_09255 0.69 -0.2 2,165,683 + CA264_09255 0.76 -0.4 2,165,684 - CA264_09255 0.76 -0.4 2,165,716 - CA264_09255 0.79 -0.6 2,165,734 + CA264_09255 0.80 -0.0 2,165,734 + CA264_09255 0.80 -0.3 2,165,735 - CA264_09255 0.80 -0.5 2,165,793 + CA264_09255 0.85 -0.5 2,165,806 + CA264_09255 0.86 -0.1 2,165,862 - CA264_09255 0.90 -0.9 2,165,862 - CA264_09255 0.90 +0.9 2,165,863 + -0.1 2,165,868 + -1.2 2,165,869 - -0.5 2,165,892 + -0.1 2,165,893 - +1.0 2,165,910 - +0.2 2,165,910 - -0.6 2,165,910 - -0.1 2,165,911 + +0.6 2,165,911 + +0.1 2,165,912 - -0.1 2,165,912 - +0.4 2,165,996 + -0.2 2,165,996 + -0.1 2,165,997 - -0.0 2,165,997 - -0.3 2,166,000 + +0.4 2,166,008 - -0.2 2,166,102 + -0.6 2,166,102 + -0.8 2,166,102 + +0.6 2,166,189 + +0.2 2,166,189 + +0.0 2,166,190 - -0.4 2,166,190 - +0.7 2,166,224 - +0.7 2,166,244 + +0.3 2,166,324 - CA264_09260 0.15 -0.4 2,166,324 - CA264_09260 0.15 +0.3 2,166,414 + CA264_09260 0.20 -0.2 2,166,414 + CA264_09260 0.20 -0.1 2,166,415 - CA264_09260 0.20 -0.1 2,166,415 - CA264_09260 0.20 -1.3 2,166,418 + CA264_09260 0.20 -0.5 2,166,418 + CA264_09260 0.20 +1.0 2,166,418 + CA264_09260 0.20 +0.1 2,166,419 - CA264_09260 0.20 -0.8 2,166,419 - CA264_09260 0.20 -0.2 2,166,503 + CA264_09260 0.26 +0.1 2,166,503 + CA264_09260 0.26 +1.0 2,166,770 - CA264_09260 0.42 +0.1 2,166,770 - CA264_09260 0.42 +0.8 2,166,770 - CA264_09260 0.42 -0.1 2,166,772 - CA264_09260 0.43 -0.2 2,166,782 - CA264_09260 0.43 -1.9 2,166,800 + CA264_09260 0.44 -0.4 2,166,801 - CA264_09260 0.44 +0.6 2,166,824 + CA264_09260 0.46 -0.1 2,166,825 - CA264_09260 0.46 +0.5 2,166,863 + CA264_09260 0.48 -0.1 2,166,899 - CA264_09260 0.50 +0.6 2,167,061 - CA264_09260 0.61 -0.7 2,167,123 - CA264_09260 0.64 -0.2 2,167,151 + CA264_09260 0.66 -0.1 2,167,151 + CA264_09260 0.66 +1.2 2,167,152 - CA264_09260 0.66 -0.3 2,167,152 - CA264_09260 0.66 +0.1 2,167,152 - CA264_09260 0.66 -0.9 2,167,511 + CA264_09260 0.89 -0.2 2,167,511 + CA264_09260 0.89 -0.2 2,167,512 - CA264_09260 0.89 -0.1 2,167,631 + +0.0 2,167,632 - +0.4 2,167,690 + +0.3 2,167,831 + +0.5 2,167,831 + +0.4 2,167,832 - -0.0 2,168,051 + CA264_09265 0.13 +0.1 2,168,051 + CA264_09265 0.13 +0.6 2,168,052 - CA264_09265 0.13 +0.2 2,168,052 - CA264_09265 0.13 +0.8 2,168,052 - CA264_09265 0.13 +0.2 2,168,058 - CA264_09265 0.14 +0.1 2,168,198 - CA264_09265 0.23 +1.0 2,168,289 - CA264_09265 0.30 +0.9 2,168,309 + CA264_09265 0.31 -0.5 2,168,309 + CA264_09265 0.31 +0.9 2,168,355 - CA264_09265 0.34 +0.4 2,168,406 + CA264_09265 0.37 +1.0 2,168,407 - CA264_09265 0.38 -0.0 2,168,580 + CA264_09265 0.49 +0.9 2,168,600 + CA264_09265 0.51 +0.6 2,168,653 + CA264_09265 0.54 +0.5 2,168,654 - CA264_09265 0.54 -1.0 2,168,663 + CA264_09265 0.55 +0.7
Or see this region's nucleotide sequence