Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08855 and CA264_08860 are separated by 59 nucleotides CA264_08860 and CA264_08865 are separated by 74 nucleotides CA264_08865 and CA264_08870 are separated by 37 nucleotides
CA264_08855: CA264_08855 - DUF1835 domain-containing protein, at 2,068,206 to 2,069,123
_08855
CA264_08860: CA264_08860 - hypothetical protein, at 2,069,183 to 2,069,584
_08860
CA264_08865: CA264_08865 - formimidoylglutamase, at 2,069,659 to 2,070,633
_08865
CA264_08870: CA264_08870 - imidazolonepropionase, at 2,070,671 to 2,071,924
_08870
Position (kb)
2069
2070
2071 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2068.686 kb on + strand, within CA264_08855 at 2068.687 kb on - strand, within CA264_08855 at 2068.719 kb on + strand, within CA264_08855 at 2068.877 kb on + strand, within CA264_08855 at 2068.878 kb on - strand, within CA264_08855 at 2068.909 kb on - strand, within CA264_08855 at 2068.925 kb on - strand, within CA264_08855 at 2068.925 kb on - strand, within CA264_08855 at 2068.925 kb on - strand, within CA264_08855 at 2068.925 kb on - strand, within CA264_08855 at 2068.985 kb on + strand, within CA264_08855 at 2068.985 kb on + strand, within CA264_08855 at 2069.028 kb on - strand, within CA264_08855 at 2069.034 kb on - strand at 2069.149 kb on - strand at 2069.159 kb on + strand at 2069.160 kb on - strand at 2069.160 kb on - strand at 2069.160 kb on - strand at 2069.165 kb on + strand at 2069.170 kb on + strand at 2069.204 kb on + strand at 2069.204 kb on + strand at 2069.205 kb on - strand at 2069.211 kb on + strand at 2069.212 kb on - strand at 2069.290 kb on + strand, within CA264_08860 at 2069.291 kb on - strand, within CA264_08860 at 2069.324 kb on - strand, within CA264_08860 at 2069.372 kb on + strand, within CA264_08860 at 2069.372 kb on + strand, within CA264_08860 at 2069.372 kb on + strand, within CA264_08860 at 2069.372 kb on + strand, within CA264_08860 at 2069.373 kb on - strand, within CA264_08860 at 2069.556 kb on - strand at 2069.592 kb on + strand at 2069.595 kb on - strand at 2069.640 kb on - strand at 2069.657 kb on - strand at 2069.662 kb on + strand at 2069.662 kb on + strand at 2069.691 kb on - strand at 2069.883 kb on + strand, within CA264_08865 at 2069.897 kb on + strand, within CA264_08865 at 2069.897 kb on + strand, within CA264_08865 at 2069.897 kb on + strand, within CA264_08865 at 2069.898 kb on - strand, within CA264_08865 at 2069.898 kb on - strand, within CA264_08865 at 2069.900 kb on - strand, within CA264_08865 at 2069.900 kb on - strand, within CA264_08865 at 2069.900 kb on - strand, within CA264_08865 at 2069.941 kb on + strand, within CA264_08865 at 2069.941 kb on + strand, within CA264_08865 at 2069.942 kb on - strand, within CA264_08865 at 2069.984 kb on + strand, within CA264_08865 at 2070.137 kb on + strand, within CA264_08865 at 2070.225 kb on - strand, within CA264_08865 at 2070.357 kb on - strand, within CA264_08865 at 2070.520 kb on + strand, within CA264_08865 at 2070.521 kb on - strand, within CA264_08865 at 2070.592 kb on + strand at 2070.593 kb on - strand at 2070.593 kb on - strand at 2070.593 kb on - strand at 2070.597 kb on + strand at 2070.598 kb on - strand at 2070.628 kb on - strand at 2070.628 kb on - strand at 2070.630 kb on - strand at 2070.630 kb on - strand at 2070.630 kb on - strand at 2070.633 kb on + strand at 2070.633 kb on + strand at 2070.633 kb on + strand at 2070.634 kb on - strand at 2070.666 kb on - strand at 2070.745 kb on + strand at 2070.751 kb on + strand at 2070.997 kb on - strand, within CA264_08870 at 2071.067 kb on + strand, within CA264_08870 at 2071.068 kb on - strand, within CA264_08870 at 2071.147 kb on + strand, within CA264_08870 at 2071.292 kb on + strand, within CA264_08870 at 2071.317 kb on + strand, within CA264_08870 at 2071.320 kb on - strand, within CA264_08870 at 2071.532 kb on + strand, within CA264_08870 at 2071.532 kb on + strand, within CA264_08870 at 2071.572 kb on - strand, within CA264_08870 at 2071.599 kb on - strand, within CA264_08870 at 2071.599 kb on - strand, within CA264_08870
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 2,068,686 + CA264_08855 0.52 +0.9 2,068,687 - CA264_08855 0.52 -0.4 2,068,719 + CA264_08855 0.56 +0.3 2,068,877 + CA264_08855 0.73 +0.3 2,068,878 - CA264_08855 0.73 +0.2 2,068,909 - CA264_08855 0.77 +0.3 2,068,925 - CA264_08855 0.78 -0.1 2,068,925 - CA264_08855 0.78 +0.7 2,068,925 - CA264_08855 0.78 +0.2 2,068,925 - CA264_08855 0.78 +0.1 2,068,985 + CA264_08855 0.85 -0.8 2,068,985 + CA264_08855 0.85 +0.8 2,069,028 - CA264_08855 0.90 +0.2 2,069,034 - -1.7 2,069,149 - +0.1 2,069,159 + +0.2 2,069,160 - -0.2 2,069,160 - +0.0 2,069,160 - -0.2 2,069,165 + +0.2 2,069,170 + -2.0 2,069,204 + -0.4 2,069,204 + -0.6 2,069,205 - -0.4 2,069,211 + +1.0 2,069,212 - +0.1 2,069,290 + CA264_08860 0.27 +0.3 2,069,291 - CA264_08860 0.27 +0.5 2,069,324 - CA264_08860 0.35 -0.7 2,069,372 + CA264_08860 0.47 +0.5 2,069,372 + CA264_08860 0.47 -0.4 2,069,372 + CA264_08860 0.47 -0.5 2,069,372 + CA264_08860 0.47 -0.3 2,069,373 - CA264_08860 0.47 -0.1 2,069,556 - +0.0 2,069,592 + -0.0 2,069,595 - +0.6 2,069,640 - -0.2 2,069,657 - +1.2 2,069,662 + +1.1 2,069,662 + -0.1 2,069,691 - -0.4 2,069,883 + CA264_08865 0.23 +0.3 2,069,897 + CA264_08865 0.24 +0.5 2,069,897 + CA264_08865 0.24 -1.4 2,069,897 + CA264_08865 0.24 -0.6 2,069,898 - CA264_08865 0.25 -0.5 2,069,898 - CA264_08865 0.25 -0.3 2,069,900 - CA264_08865 0.25 +0.2 2,069,900 - CA264_08865 0.25 -0.7 2,069,900 - CA264_08865 0.25 -0.3 2,069,941 + CA264_08865 0.29 -0.7 2,069,941 + CA264_08865 0.29 -1.4 2,069,942 - CA264_08865 0.29 +0.3 2,069,984 + CA264_08865 0.33 +1.9 2,070,137 + CA264_08865 0.49 +0.2 2,070,225 - CA264_08865 0.58 -0.5 2,070,357 - CA264_08865 0.72 -0.1 2,070,520 + CA264_08865 0.88 -0.3 2,070,521 - CA264_08865 0.88 +0.8 2,070,592 + -0.3 2,070,593 - +0.0 2,070,593 - -0.5 2,070,593 - +0.5 2,070,597 + -1.1 2,070,598 - -1.0 2,070,628 - -0.6 2,070,628 - +0.4 2,070,630 - -0.3 2,070,630 - +0.0 2,070,630 - -0.1 2,070,633 + +1.4 2,070,633 + +1.3 2,070,633 + -0.2 2,070,634 - +0.3 2,070,666 - +0.1 2,070,745 + +0.5 2,070,751 + +0.5 2,070,997 - CA264_08870 0.26 +0.4 2,071,067 + CA264_08870 0.32 -0.2 2,071,068 - CA264_08870 0.32 +0.4 2,071,147 + CA264_08870 0.38 +1.9 2,071,292 + CA264_08870 0.50 -0.1 2,071,317 + CA264_08870 0.52 +1.2 2,071,320 - CA264_08870 0.52 +0.5 2,071,532 + CA264_08870 0.69 +0.8 2,071,532 + CA264_08870 0.69 +0.3 2,071,572 - CA264_08870 0.72 +1.0 2,071,599 - CA264_08870 0.74 +0.8 2,071,599 - CA264_08870 0.74 -0.1
Or see this region's nucleotide sequence