Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07535

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07530 and CA264_07535 overlap by 11 nucleotidesCA264_07535 and CA264_07540 are separated by 273 nucleotides CA264_07530: CA264_07530 - ATP-binding protein, at 1,743,607 to 1,744,962 _07530 CA264_07535: CA264_07535 - sigma-54-dependent Fis family transcriptional regulator, at 1,744,952 to 1,746,337 _07535 CA264_07540: CA264_07540 - hypothetical protein, at 1,746,611 to 1,749,013 _07540 Position (kb) 1744 1745 1746 1747Strain fitness (log2 ratio) -2 -1 0 1 2at 1744.018 kb on + strand, within CA264_07530at 1744.060 kb on + strand, within CA264_07530at 1744.061 kb on - strand, within CA264_07530at 1744.061 kb on - strand, within CA264_07530at 1744.194 kb on + strand, within CA264_07530at 1744.195 kb on - strand, within CA264_07530at 1744.197 kb on - strand, within CA264_07530at 1744.257 kb on + strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.549 kb on - strand, within CA264_07530at 1744.623 kb on - strand, within CA264_07530at 1744.751 kb on + strand, within CA264_07530at 1744.751 kb on + strand, within CA264_07530at 1744.752 kb on - strand, within CA264_07530at 1744.752 kb on - strand, within CA264_07530at 1744.755 kb on + strand, within CA264_07530at 1744.755 kb on + strand, within CA264_07530at 1744.755 kb on + strand, within CA264_07530at 1744.756 kb on - strand, within CA264_07530at 1744.756 kb on - strand, within CA264_07530at 1744.778 kb on + strand, within CA264_07530at 1744.779 kb on - strand, within CA264_07530at 1744.779 kb on - strand, within CA264_07530at 1744.844 kb on - strandat 1744.963 kb on - strandat 1745.025 kb on - strandat 1745.235 kb on + strand, within CA264_07535at 1745.236 kb on - strand, within CA264_07535at 1745.236 kb on - strand, within CA264_07535at 1745.295 kb on - strand, within CA264_07535at 1745.303 kb on + strand, within CA264_07535at 1745.304 kb on - strand, within CA264_07535at 1745.304 kb on - strand, within CA264_07535at 1745.304 kb on - strand, within CA264_07535at 1745.504 kb on + strand, within CA264_07535at 1745.504 kb on + strand, within CA264_07535at 1745.505 kb on - strand, within CA264_07535at 1745.703 kb on - strand, within CA264_07535at 1745.822 kb on - strand, within CA264_07535at 1745.822 kb on - strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.826 kb on - strand, within CA264_07535at 1745.830 kb on + strand, within CA264_07535at 1745.848 kb on + strand, within CA264_07535at 1745.849 kb on - strand, within CA264_07535at 1745.940 kb on + strand, within CA264_07535at 1745.941 kb on - strand, within CA264_07535at 1746.009 kb on - strand, within CA264_07535at 1746.070 kb on + strand, within CA264_07535at 1746.070 kb on + strand, within CA264_07535at 1746.081 kb on - strand, within CA264_07535at 1746.116 kb on - strand, within CA264_07535at 1746.158 kb on - strand, within CA264_07535at 1746.337 kb on + strandat 1746.337 kb on + strandat 1746.338 kb on - strandat 1746.341 kb on + strandat 1746.342 kb on - strandat 1746.342 kb on - strandat 1746.344 kb on - strandat 1746.344 kb on - strandat 1746.356 kb on + strandat 1746.360 kb on + strandat 1746.360 kb on + strandat 1746.361 kb on - strandat 1746.368 kb on + strandat 1746.369 kb on - strandat 1746.379 kb on + strandat 1746.492 kb on - strandat 1746.492 kb on - strandat 1746.492 kb on - strandat 1746.492 kb on - strandat 1746.501 kb on + strandat 1746.530 kb on - strandat 1746.578 kb on + strandat 1746.591 kb on + strandat 1746.591 kb on + strandat 1746.611 kb on - strandat 1746.611 kb on - strandat 1746.750 kb on - strandat 1746.750 kb on - strandat 1746.821 kb on - strandat 1746.821 kb on - strandat 1746.821 kb on - strandat 1746.852 kb on - strand, within CA264_07540at 1746.897 kb on + strand, within CA264_07540at 1746.921 kb on + strand, within CA264_07540at 1746.922 kb on - strand, within CA264_07540at 1746.970 kb on + strand, within CA264_07540at 1747.039 kb on - strand, within CA264_07540at 1747.052 kb on - strand, within CA264_07540at 1747.052 kb on - strand, within CA264_07540at 1747.093 kb on + strand, within CA264_07540at 1747.128 kb on + strand, within CA264_07540at 1747.148 kb on + strand, within CA264_07540at 1747.149 kb on - strand, within CA264_07540at 1747.149 kb on - strand, within CA264_07540at 1747.172 kb on - strand, within CA264_07540at 1747.224 kb on - strand, within CA264_07540at 1747.296 kb on + strand, within CA264_07540at 1747.306 kb on + strand, within CA264_07540at 1747.307 kb on - strand, within CA264_07540at 1747.307 kb on - strand, within CA264_07540at 1747.307 kb on - strand, within CA264_07540at 1747.336 kb on - strand, within CA264_07540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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1,744,018 + CA264_07530 0.30 -0.2
1,744,060 + CA264_07530 0.33 +0.0
1,744,061 - CA264_07530 0.33 +0.3
1,744,061 - CA264_07530 0.33 +1.9
1,744,194 + CA264_07530 0.43 +0.5
1,744,195 - CA264_07530 0.43 -1.0
1,744,197 - CA264_07530 0.44 -0.0
1,744,257 + CA264_07530 0.48 -0.9
1,744,328 - CA264_07530 0.53 -1.8
1,744,328 - CA264_07530 0.53 +0.2
1,744,328 - CA264_07530 0.53 +0.0
1,744,328 - CA264_07530 0.53 -0.7
1,744,549 - CA264_07530 0.69 +0.0
1,744,623 - CA264_07530 0.75 +0.2
1,744,751 + CA264_07530 0.84 +0.5
1,744,751 + CA264_07530 0.84 +2.3
1,744,752 - CA264_07530 0.84 +0.8
1,744,752 - CA264_07530 0.84 -0.4
1,744,755 + CA264_07530 0.85 -0.2
1,744,755 + CA264_07530 0.85 -0.5
1,744,755 + CA264_07530 0.85 -0.2
1,744,756 - CA264_07530 0.85 -0.6
1,744,756 - CA264_07530 0.85 +0.3
1,744,778 + CA264_07530 0.86 -0.2
1,744,779 - CA264_07530 0.86 -0.2
1,744,779 - CA264_07530 0.86 +0.9
1,744,844 - +0.1
1,744,963 - +0.6
1,745,025 - -2.5
1,745,235 + CA264_07535 0.20 -1.1
1,745,236 - CA264_07535 0.20 -0.5
1,745,236 - CA264_07535 0.20 +0.4
1,745,295 - CA264_07535 0.25 +0.2
1,745,303 + CA264_07535 0.25 -1.1
1,745,304 - CA264_07535 0.25 -0.4
1,745,304 - CA264_07535 0.25 +0.8
1,745,304 - CA264_07535 0.25 +0.8
1,745,504 + CA264_07535 0.40 +0.9
1,745,504 + CA264_07535 0.40 -0.5
1,745,505 - CA264_07535 0.40 -0.1
1,745,703 - CA264_07535 0.54 -0.1
1,745,822 - CA264_07535 0.63 -0.4
1,745,822 - CA264_07535 0.63 -0.4
1,745,825 + CA264_07535 0.63 +0.6
1,745,825 + CA264_07535 0.63 +0.1
1,745,825 + CA264_07535 0.63 -1.7
1,745,826 - CA264_07535 0.63 -0.6
1,745,830 + CA264_07535 0.63 +0.0
1,745,848 + CA264_07535 0.65 -0.1
1,745,849 - CA264_07535 0.65 -1.1
1,745,940 + CA264_07535 0.71 -0.8
1,745,941 - CA264_07535 0.71 +0.1
1,746,009 - CA264_07535 0.76 -0.5
1,746,070 + CA264_07535 0.81 -0.2
1,746,070 + CA264_07535 0.81 -1.8
1,746,081 - CA264_07535 0.81 +0.0
1,746,116 - CA264_07535 0.84 +0.2
1,746,158 - CA264_07535 0.87 +0.3
1,746,337 + -0.4
1,746,337 + -0.5
1,746,338 - -0.4
1,746,341 + +1.2
1,746,342 - -0.4
1,746,342 - -0.9
1,746,344 - -0.1
1,746,344 - -0.0
1,746,356 + -0.4
1,746,360 + +0.1
1,746,360 + -1.3
1,746,361 - +0.2
1,746,368 + -0.2
1,746,369 - -0.8
1,746,379 + -0.5
1,746,492 - +0.3
1,746,492 - -0.2
1,746,492 - -0.5
1,746,492 - +0.1
1,746,501 + +0.2
1,746,530 - -1.0
1,746,578 + -0.5
1,746,591 + -0.1
1,746,591 + +0.2
1,746,611 - -0.5
1,746,611 - -0.3
1,746,750 - +0.3
1,746,750 - +0.8
1,746,821 - -1.5
1,746,821 - +0.3
1,746,821 - +0.3
1,746,852 - CA264_07540 0.10 +0.7
1,746,897 + CA264_07540 0.12 -0.7
1,746,921 + CA264_07540 0.13 -0.1
1,746,922 - CA264_07540 0.13 -0.4
1,746,970 + CA264_07540 0.15 +0.1
1,747,039 - CA264_07540 0.18 +0.2
1,747,052 - CA264_07540 0.18 -2.1
1,747,052 - CA264_07540 0.18 -0.3
1,747,093 + CA264_07540 0.20 +0.0
1,747,128 + CA264_07540 0.22 -0.4
1,747,148 + CA264_07540 0.22 -0.3
1,747,149 - CA264_07540 0.22 -0.2
1,747,149 - CA264_07540 0.22 +0.1
1,747,172 - CA264_07540 0.23 -1.4
1,747,224 - CA264_07540 0.26 -0.2
1,747,296 + CA264_07540 0.29 -0.1
1,747,306 + CA264_07540 0.29 -0.2
1,747,307 - CA264_07540 0.29 -0.4
1,747,307 - CA264_07540 0.29 -0.7
1,747,307 - CA264_07540 0.29 +0.9
1,747,336 - CA264_07540 0.30 -0.4

Or see this region's nucleotide sequence