Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03190

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03185 and CA264_03190 are separated by 117 nucleotidesCA264_03190 and CA264_03195 are separated by 268 nucleotides CA264_03185: CA264_03185 - hypothetical protein, at 745,594 to 746,904 _03185 CA264_03190: CA264_03190 - hypothetical protein, at 747,022 to 747,483 _03190 CA264_03195: CA264_03195 - alpha-glucan family phosphorylase, at 747,752 to 749,407 _03195 Position (kb) 747 748Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 746.089 kb on + strand, within CA264_03185at 746.097 kb on + strand, within CA264_03185at 746.101 kb on - strand, within CA264_03185at 746.141 kb on + strand, within CA264_03185at 746.175 kb on + strand, within CA264_03185at 746.180 kb on - strand, within CA264_03185at 746.193 kb on + strand, within CA264_03185at 746.262 kb on + strand, within CA264_03185at 746.262 kb on + strand, within CA264_03185at 746.263 kb on - strand, within CA264_03185at 746.285 kb on + strand, within CA264_03185at 746.285 kb on + strand, within CA264_03185at 746.286 kb on - strand, within CA264_03185at 746.286 kb on - strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.305 kb on + strand, within CA264_03185at 746.347 kb on - strand, within CA264_03185at 746.468 kb on + strand, within CA264_03185at 746.471 kb on + strand, within CA264_03185at 746.490 kb on - strand, within CA264_03185at 746.588 kb on - strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.709 kb on - strand, within CA264_03185at 746.713 kb on + strand, within CA264_03185at 746.792 kb on + strandat 746.793 kb on - strandat 746.950 kb on - strandat 746.952 kb on - strandat 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.393 kb on + strand, within CA264_03190at 747.484 kb on - strandat 747.490 kb on + strandat 747.490 kb on + strandat 747.491 kb on - strandat 747.491 kb on - strandat 747.507 kb on - strandat 747.575 kb on + strandat 747.652 kb on + strandat 747.652 kb on + strandat 747.662 kb on - strandat 747.672 kb on - strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.683 kb on - strandat 747.683 kb on - strandat 747.752 kb on - strandat 747.752 kb on - strandat 747.765 kb on - strandat 747.785 kb on + strandat 747.785 kb on + strandat 747.786 kb on - strandat 747.804 kb on - strandat 747.805 kb on + strandat 747.864 kb on - strandat 747.957 kb on - strand, within CA264_03195at 747.963 kb on - strand, within CA264_03195at 747.965 kb on + strand, within CA264_03195at 747.965 kb on + strand, within CA264_03195at 747.965 kb on + strand, within CA264_03195at 748.049 kb on - strand, within CA264_03195at 748.134 kb on - strand, within CA264_03195at 748.184 kb on - strand, within CA264_03195at 748.246 kb on - strand, within CA264_03195at 748.256 kb on - strand, within CA264_03195at 748.289 kb on + strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.327 kb on + strand, within CA264_03195at 748.362 kb on + strand, within CA264_03195at 748.363 kb on - strand, within CA264_03195at 748.363 kb on - strand, within CA264_03195at 748.454 kb on - strand, within CA264_03195at 748.462 kb on - strand, within CA264_03195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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746,089 + CA264_03185 0.38 -2.7
746,097 + CA264_03185 0.38 -2.5
746,101 - CA264_03185 0.39 -2.1
746,141 + CA264_03185 0.42 -1.3
746,175 + CA264_03185 0.44 -3.1
746,180 - CA264_03185 0.45 -1.5
746,193 + CA264_03185 0.46 +1.1
746,262 + CA264_03185 0.51 -1.3
746,262 + CA264_03185 0.51 -1.8
746,263 - CA264_03185 0.51 -1.6
746,285 + CA264_03185 0.53 -1.1
746,285 + CA264_03185 0.53 -0.7
746,286 - CA264_03185 0.53 -3.0
746,286 - CA264_03185 0.53 -1.5
746,295 + CA264_03185 0.53 -2.6
746,295 + CA264_03185 0.53 -0.6
746,295 + CA264_03185 0.53 +0.4
746,305 + CA264_03185 0.54 -3.5
746,347 - CA264_03185 0.57 -1.5
746,468 + CA264_03185 0.67 -1.8
746,471 + CA264_03185 0.67 -1.5
746,490 - CA264_03185 0.68 -0.4
746,588 - CA264_03185 0.76 -1.4
746,708 + CA264_03185 0.85 -1.2
746,708 + CA264_03185 0.85 +0.7
746,708 + CA264_03185 0.85 -0.5
746,708 + CA264_03185 0.85 -2.1
746,709 - CA264_03185 0.85 -2.7
746,713 + CA264_03185 0.85 -0.3
746,792 + -2.0
746,793 - -2.1
746,950 - -1.2
746,952 - -3.6
747,380 + CA264_03190 0.77 -0.9
747,380 + CA264_03190 0.77 -2.4
747,380 + CA264_03190 0.77 -1.3
747,380 + CA264_03190 0.77 -0.1
747,393 + CA264_03190 0.80 -1.0
747,484 - -0.3
747,490 + +0.2
747,490 + -0.8
747,491 - -0.7
747,491 - -1.2
747,507 - -0.1
747,575 + -0.9
747,652 + -0.6
747,652 + -0.5
747,662 - +1.2
747,672 - -0.9
747,682 + -1.5
747,682 + +0.1
747,682 + +2.4
747,682 + -0.1
747,682 + +0.1
747,682 + -0.3
747,683 - -1.1
747,683 - -0.3
747,752 - -0.4
747,752 - +0.6
747,765 - -0.8
747,785 + +0.0
747,785 + +0.4
747,786 - -1.6
747,804 - -0.2
747,805 + -0.5
747,864 - +1.0
747,957 - CA264_03195 0.12 -0.3
747,963 - CA264_03195 0.13 +0.4
747,965 + CA264_03195 0.13 +0.5
747,965 + CA264_03195 0.13 +0.1
747,965 + CA264_03195 0.13 -0.7
748,049 - CA264_03195 0.18 -0.5
748,134 - CA264_03195 0.23 -0.4
748,184 - CA264_03195 0.26 -0.0
748,246 - CA264_03195 0.30 +0.1
748,256 - CA264_03195 0.30 +0.2
748,289 + CA264_03195 0.32 +0.4
748,295 - CA264_03195 0.33 -0.6
748,295 - CA264_03195 0.33 -0.6
748,295 - CA264_03195 0.33 -0.6
748,295 - CA264_03195 0.33 -0.1
748,327 + CA264_03195 0.35 +0.2
748,362 + CA264_03195 0.37 +0.2
748,363 - CA264_03195 0.37 -0.3
748,363 - CA264_03195 0.37 +0.8
748,454 - CA264_03195 0.42 +0.0
748,462 - CA264_03195 0.43 +0.0

Or see this region's nucleotide sequence