Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01900

Experiment: m.b. Tetracycline 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_01890 and CA264_01895 are separated by 170 nucleotidesCA264_01895 and CA264_01900 are separated by 435 nucleotidesCA264_01900 and CA264_01905 are separated by 470 nucleotides CA264_01890: CA264_01890 - hypothetical protein, at 441,226 to 441,681 _01890 CA264_01895: CA264_01895 - hypothetical protein, at 441,852 to 442,154 _01895 CA264_01900: CA264_01900 - hypothetical protein, at 442,590 to 443,381 _01900 CA264_01905: CA264_01905 - cystathionine beta-synthase, at 443,852 to 445,696 _01905 Position (kb) 442 443 444Strain fitness (log2 ratio) -2 -1 0 1 2 3at 441.607 kb on + strand, within CA264_01890at 441.743 kb on - strandat 441.754 kb on - strandat 441.775 kb on + strandat 441.776 kb on - strandat 441.840 kb on - strandat 441.840 kb on - strandat 441.864 kb on - strandat 441.876 kb on + strandat 441.880 kb on - strandat 441.930 kb on + strand, within CA264_01895at 441.930 kb on + strand, within CA264_01895at 441.930 kb on + strand, within CA264_01895at 441.930 kb on + strand, within CA264_01895at 441.931 kb on - strand, within CA264_01895at 441.993 kb on + strand, within CA264_01895at 441.993 kb on + strand, within CA264_01895at 441.994 kb on - strand, within CA264_01895at 441.994 kb on - strand, within CA264_01895at 441.994 kb on - strand, within CA264_01895at 441.997 kb on + strand, within CA264_01895at 441.997 kb on + strand, within CA264_01895at 441.998 kb on - strand, within CA264_01895at 441.998 kb on - strand, within CA264_01895at 442.020 kb on + strand, within CA264_01895at 442.022 kb on + strand, within CA264_01895at 442.023 kb on - strand, within CA264_01895at 442.023 kb on - strand, within CA264_01895at 442.023 kb on - strand, within CA264_01895at 442.056 kb on - strand, within CA264_01895at 442.072 kb on + strand, within CA264_01895at 442.072 kb on + strand, within CA264_01895at 442.073 kb on - strand, within CA264_01895at 442.073 kb on - strand, within CA264_01895at 442.166 kb on + strandat 442.204 kb on + strandat 442.257 kb on - strandat 442.284 kb on - strandat 442.400 kb on - strandat 442.413 kb on - strandat 442.413 kb on - strandat 442.420 kb on + strandat 442.421 kb on - strandat 442.515 kb on + strandat 442.519 kb on - strandat 442.519 kb on - strandat 442.522 kb on + strandat 442.567 kb on - strandat 442.578 kb on - strandat 442.583 kb on + strandat 442.583 kb on + strandat 442.584 kb on - strandat 442.590 kb on - strandat 442.590 kb on - strandat 442.599 kb on - strandat 442.603 kb on + strandat 442.604 kb on - strandat 442.604 kb on - strandat 442.604 kb on - strandat 442.606 kb on + strandat 442.606 kb on + strandat 442.607 kb on - strandat 442.645 kb on + strandat 442.654 kb on + strandat 442.655 kb on - strandat 442.658 kb on + strandat 442.689 kb on - strand, within CA264_01900at 442.742 kb on + strand, within CA264_01900at 442.743 kb on - strand, within CA264_01900at 442.743 kb on - strand, within CA264_01900at 442.744 kb on + strand, within CA264_01900at 442.745 kb on - strand, within CA264_01900at 442.745 kb on - strand, within CA264_01900at 442.748 kb on + strand, within CA264_01900at 442.748 kb on + strand, within CA264_01900at 442.749 kb on - strand, within CA264_01900at 442.803 kb on + strand, within CA264_01900at 442.821 kb on - strand, within CA264_01900at 442.871 kb on + strand, within CA264_01900at 442.872 kb on - strand, within CA264_01900at 443.061 kb on - strand, within CA264_01900at 443.062 kb on + strand, within CA264_01900at 443.063 kb on - strand, within CA264_01900at 443.063 kb on - strand, within CA264_01900at 443.141 kb on + strand, within CA264_01900at 443.242 kb on + strand, within CA264_01900at 443.261 kb on - strand, within CA264_01900at 443.324 kb on - strandat 443.377 kb on + strandat 443.377 kb on + strandat 443.443 kb on + strandat 443.444 kb on - strandat 443.473 kb on - strandat 443.536 kb on - strandat 443.542 kb on - strandat 443.542 kb on - strandat 443.581 kb on + strandat 443.582 kb on - strandat 443.619 kb on + strandat 443.620 kb on - strandat 443.620 kb on - strandat 443.620 kb on - strandat 443.620 kb on - strandat 443.631 kb on + strandat 443.656 kb on + strandat 443.665 kb on - strandat 443.668 kb on + strandat 443.668 kb on + strandat 443.669 kb on - strandat 443.669 kb on - strandat 443.679 kb on - strandat 443.709 kb on + strandat 443.710 kb on - strandat 443.821 kb on + strandat 443.848 kb on + strandat 443.852 kb on - strandat 443.852 kb on - strandat 443.941 kb on + strandat 444.053 kb on + strand, within CA264_01905at 444.055 kb on + strand, within CA264_01905at 444.064 kb on - strand, within CA264_01905at 444.191 kb on - strand, within CA264_01905at 444.218 kb on - strand, within CA264_01905at 444.267 kb on - strand, within CA264_01905at 444.267 kb on - strand, within CA264_01905at 444.314 kb on - strand, within CA264_01905at 444.361 kb on - strand, within CA264_01905

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
remove
441,607 + CA264_01890 0.84 +0.0
441,743 - +0.1
441,754 - +0.5
441,775 + -0.0
441,776 - -0.1
441,840 - -0.6
441,840 - -0.2
441,864 - +0.7
441,876 + +0.2
441,880 - +0.1
441,930 + CA264_01895 0.26 +1.1
441,930 + CA264_01895 0.26 +1.1
441,930 + CA264_01895 0.26 -0.7
441,930 + CA264_01895 0.26 +0.1
441,931 - CA264_01895 0.26 -0.2
441,993 + CA264_01895 0.47 +0.2
441,993 + CA264_01895 0.47 -1.8
441,994 - CA264_01895 0.47 +0.4
441,994 - CA264_01895 0.47 -0.3
441,994 - CA264_01895 0.47 +3.7
441,997 + CA264_01895 0.48 +0.0
441,997 + CA264_01895 0.48 -0.4
441,998 - CA264_01895 0.48 +0.1
441,998 - CA264_01895 0.48 -0.1
442,020 + CA264_01895 0.55 +0.1
442,022 + CA264_01895 0.56 -0.1
442,023 - CA264_01895 0.56 +0.2
442,023 - CA264_01895 0.56 -0.4
442,023 - CA264_01895 0.56 -0.0
442,056 - CA264_01895 0.67 +0.4
442,072 + CA264_01895 0.73 +0.9
442,072 + CA264_01895 0.73 -0.8
442,073 - CA264_01895 0.73 +0.2
442,073 - CA264_01895 0.73 +0.8
442,166 + -0.6
442,204 + +0.6
442,257 - -0.4
442,284 - +0.1
442,400 - -0.6
442,413 - -0.1
442,413 - -1.2
442,420 + -0.5
442,421 - -0.6
442,515 + -0.8
442,519 - +0.3
442,519 - -1.4
442,522 + -0.2
442,567 - -0.4
442,578 - +0.5
442,583 + -0.1
442,583 + -0.6
442,584 - +0.2
442,590 - +0.4
442,590 - -0.4
442,599 - -0.9
442,603 + +0.8
442,604 - -0.4
442,604 - -0.1
442,604 - +0.8
442,606 + -0.0
442,606 + -0.3
442,607 - -0.2
442,645 + +0.5
442,654 + +0.3
442,655 - +0.5
442,658 + -0.2
442,689 - CA264_01900 0.12 -0.1
442,742 + CA264_01900 0.19 -0.4
442,743 - CA264_01900 0.19 +2.4
442,743 - CA264_01900 0.19 -1.1
442,744 + CA264_01900 0.19 -0.2
442,745 - CA264_01900 0.20 -1.4
442,745 - CA264_01900 0.20 +0.1
442,748 + CA264_01900 0.20 -0.6
442,748 + CA264_01900 0.20 +0.5
442,749 - CA264_01900 0.20 +0.9
442,803 + CA264_01900 0.27 -1.5
442,821 - CA264_01900 0.29 -0.5
442,871 + CA264_01900 0.35 +0.4
442,872 - CA264_01900 0.36 -0.4
443,061 - CA264_01900 0.59 -0.8
443,062 + CA264_01900 0.60 +0.1
443,063 - CA264_01900 0.60 -1.5
443,063 - CA264_01900 0.60 -0.1
443,141 + CA264_01900 0.70 -0.6
443,242 + CA264_01900 0.82 -0.4
443,261 - CA264_01900 0.85 +1.4
443,324 - -1.5
443,377 + -0.4
443,377 + -0.1
443,443 + +0.1
443,444 - -0.3
443,473 - -0.4
443,536 - -1.3
443,542 - +0.8
443,542 - -0.2
443,581 + -1.0
443,582 - +0.2
443,619 + -0.9
443,620 - +1.0
443,620 - -0.7
443,620 - -0.5
443,620 - +0.1
443,631 + -1.5
443,656 + -0.2
443,665 - -0.6
443,668 + +0.1
443,668 + -2.6
443,669 - +1.3
443,669 - -0.0
443,679 - -0.5
443,709 + +0.1
443,710 - +0.0
443,821 + +0.8
443,848 + -0.9
443,852 - +0.1
443,852 - +0.6
443,941 + -0.2
444,053 + CA264_01905 0.11 +0.7
444,055 + CA264_01905 0.11 +0.8
444,064 - CA264_01905 0.11 +1.0
444,191 - CA264_01905 0.18 -0.1
444,218 - CA264_01905 0.20 -0.8
444,267 - CA264_01905 0.22 -0.3
444,267 - CA264_01905 0.22 +0.8
444,314 - CA264_01905 0.25 +1.2
444,361 - CA264_01905 0.28 +0.1

Or see this region's nucleotide sequence