Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01035 and CA264_01040 are separated by 283 nucleotides CA264_01040 and CA264_01045 are separated by 25 nucleotides
CA264_01035: CA264_01035 - hypothetical protein, at 228,935 to 230,023
_01035
CA264_01040: CA264_01040 - hypothetical protein, at 230,307 to 230,729
_01040
CA264_01045: CA264_01045 - hypothetical protein, at 230,755 to 231,579
_01045
Position (kb)
228
229
230
231 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 227.968 kb on + strand at 227.968 kb on + strand at 227.972 kb on - strand at 228.021 kb on - strand at 228.021 kb on - strand at 228.024 kb on - strand at 228.031 kb on + strand at 228.035 kb on + strand at 228.045 kb on + strand at 228.110 kb on + strand at 228.111 kb on - strand at 228.111 kb on - strand at 228.142 kb on + strand at 228.143 kb on - strand at 228.143 kb on - strand at 228.146 kb on + strand at 228.146 kb on + strand at 228.154 kb on + strand at 228.155 kb on - strand at 228.158 kb on + strand at 228.207 kb on + strand at 228.237 kb on - strand at 228.240 kb on - strand at 228.304 kb on + strand at 228.309 kb on + strand at 228.340 kb on + strand at 228.344 kb on + strand at 228.345 kb on - strand at 228.387 kb on + strand at 228.388 kb on - strand at 228.406 kb on + strand at 228.515 kb on - strand at 228.685 kb on - strand at 228.703 kb on + strand at 228.704 kb on - strand at 228.708 kb on + strand at 228.736 kb on + strand at 228.759 kb on - strand at 228.762 kb on - strand at 228.804 kb on - strand at 228.954 kb on - strand at 228.970 kb on - strand at 228.973 kb on - strand at 228.975 kb on + strand at 228.975 kb on + strand at 228.976 kb on - strand at 228.984 kb on + strand at 228.985 kb on - strand at 228.985 kb on - strand at 229.001 kb on - strand at 229.011 kb on + strand at 229.020 kb on + strand at 229.039 kb on + strand at 229.039 kb on + strand at 229.051 kb on + strand, within CA264_01035 at 229.052 kb on - strand, within CA264_01035 at 229.055 kb on - strand, within CA264_01035 at 229.078 kb on + strand, within CA264_01035 at 229.078 kb on + strand, within CA264_01035 at 229.078 kb on + strand, within CA264_01035 at 229.079 kb on - strand, within CA264_01035 at 229.952 kb on + strand at 229.953 kb on - strand at 229.969 kb on + strand at 229.975 kb on + strand at 230.021 kb on + strand at 230.022 kb on - strand at 230.029 kb on - strand at 230.030 kb on + strand at 230.031 kb on - strand at 230.040 kb on + strand at 230.041 kb on - strand at 230.060 kb on + strand at 230.061 kb on - strand at 230.086 kb on + strand at 230.086 kb on + strand at 230.087 kb on - strand at 230.217 kb on - strand at 230.217 kb on - strand at 230.236 kb on + strand at 230.242 kb on - strand at 230.242 kb on - strand at 230.242 kb on - strand at 230.243 kb on + strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.245 kb on + strand at 230.246 kb on - strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.248 kb on - strand at 230.248 kb on - strand at 230.248 kb on - strand at 230.261 kb on + strand at 230.261 kb on + strand at 230.262 kb on - strand at 230.276 kb on + strand at 230.276 kb on + strand at 230.299 kb on + strand at 230.603 kb on + strand, within CA264_01040 at 230.621 kb on - strand, within CA264_01040 at 230.635 kb on - strand, within CA264_01040 at 230.635 kb on - strand, within CA264_01040 at 230.702 kb on - strand at 230.723 kb on - strand at 230.728 kb on - strand at 230.728 kb on - strand at 230.742 kb on - strand at 230.761 kb on + strand at 230.761 kb on + strand at 230.761 kb on + strand at 230.987 kb on - strand, within CA264_01045 at 230.987 kb on - strand, within CA264_01045 at 230.996 kb on + strand, within CA264_01045 at 231.018 kb on - strand, within CA264_01045 at 231.018 kb on - strand, within CA264_01045
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 227,968 + -1.5 227,968 + -0.7 227,972 - +1.0 228,021 - -0.0 228,021 - -0.1 228,024 - +0.1 228,031 + -0.9 228,035 + +0.5 228,045 + +1.1 228,110 + -0.4 228,111 - -0.5 228,111 - +0.2 228,142 + +1.0 228,143 - -0.2 228,143 - -0.2 228,146 + +0.1 228,146 + -0.2 228,154 + +0.3 228,155 - +0.2 228,158 + -0.3 228,207 + -2.1 228,237 - -1.3 228,240 - +0.1 228,304 + +0.2 228,309 + -0.0 228,340 + +0.1 228,344 + -0.1 228,345 - -0.3 228,387 + -0.5 228,388 - +0.7 228,406 + +0.6 228,515 - +0.1 228,685 - +0.2 228,703 + -0.6 228,704 - -0.7 228,708 + -0.3 228,736 + -0.4 228,759 - -0.3 228,762 - -0.8 228,804 - -0.3 228,954 - -0.3 228,970 - +0.1 228,973 - +0.6 228,975 + -0.7 228,975 + +0.8 228,976 - +0.1 228,984 + -1.3 228,985 - +1.2 228,985 - +0.5 229,001 - -0.9 229,011 + +0.8 229,020 + -2.3 229,039 + -0.2 229,039 + -1.4 229,051 + CA264_01035 0.11 -0.0 229,052 - CA264_01035 0.11 -0.6 229,055 - CA264_01035 0.11 -1.0 229,078 + CA264_01035 0.13 -0.3 229,078 + CA264_01035 0.13 -0.7 229,078 + CA264_01035 0.13 +0.2 229,079 - CA264_01035 0.13 -0.2 229,952 + -0.0 229,953 - +0.0 229,969 + -0.3 229,975 + +0.2 230,021 + +0.7 230,022 - +0.3 230,029 - -0.9 230,030 + -0.2 230,031 - -0.4 230,040 + +0.1 230,041 - +0.0 230,060 + -0.4 230,061 - -1.3 230,086 + -0.3 230,086 + -0.0 230,087 - -1.3 230,217 - -0.3 230,217 - -0.8 230,236 + +0.2 230,242 - -1.2 230,242 - +0.7 230,242 - -0.0 230,243 + -1.4 230,244 - +1.3 230,244 - +0.4 230,244 - -0.3 230,244 - +0.1 230,245 + +2.4 230,246 - +0.3 230,247 + +0.1 230,247 + -0.7 230,247 + -0.4 230,247 + +0.2 230,247 + +1.0 230,247 + -0.3 230,248 - -0.3 230,248 - -1.2 230,248 - +0.4 230,261 + +0.4 230,261 + +0.5 230,262 - -0.3 230,276 + -0.2 230,276 + -0.4 230,299 + +0.2 230,603 + CA264_01040 0.70 +0.8 230,621 - CA264_01040 0.74 -0.3 230,635 - CA264_01040 0.78 -0.7 230,635 - CA264_01040 0.78 +0.1 230,702 - +0.3 230,723 - -0.7 230,728 - +0.8 230,728 - +0.3 230,742 - +0.6 230,761 + -1.6 230,761 + +0.4 230,761 + +0.7 230,987 - CA264_01045 0.28 -0.7 230,987 - CA264_01045 0.28 -0.1 230,996 + CA264_01045 0.29 -0.6 231,018 - CA264_01045 0.32 +0.8 231,018 - CA264_01045 0.32 +0.2
Or see this region's nucleotide sequence