Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS31710

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
4,574,455	+				-2.6
4,574,455	+				-0.5
4,574,456	-				-0.8
4,574,459	+				-2.6
4,574,459	+				-1.2
4,574,460	-				-1.9
4,574,460	-				+1.0
4,574,473	-				-0.4
4,574,473	-				-0.4
4,574,502	+				-0.4
4,574,502	+				-1.6
4,574,502	+				+1.2
4,574,502	+				+1.0
4,574,507	+				+1.2
4,574,507	+				+0.0
4,574,507	+				-0.6
4,574,507	+				+0.3
4,574,507	+				-0.5
4,574,507	+				-0.3
4,574,508	-				-0.3
4,574,508	-				+0.5
4,574,508	-				+0.4
4,574,508	-				-2.7
4,574,508	-				-1.2
4,574,508	-				+1.3
4,574,508	-				+0.3
4,574,508	-				-1.3
4,574,511	+		PFLU_RS30970	0.11	+1.9
4,574,511	+		PFLU_RS30970	0.11	-1.1
4,574,511	+		PFLU_RS30970	0.11	+0.9
4,574,511	+		PFLU_RS30970	0.11	-0.7
4,574,511	+		PFLU_RS30970	0.11	+1.4
4,574,511	+		PFLU_RS30970	0.11	-1.7
4,574,511	+		PFLU_RS30970	0.11	+2.1
4,574,512	-		PFLU_RS30970	0.11	-0.8
4,574,518	+		PFLU_RS30970	0.13	+0.2
4,574,518	+		PFLU_RS30970	0.13	-1.1
4,574,518	+		PFLU_RS30970	0.13	-0.1
4,574,518	+		PFLU_RS30970	0.13	-0.0
4,574,518	+		PFLU_RS30970	0.13	-1.0
4,574,519	-		PFLU_RS30970	0.14	+0.8
4,574,519	-		PFLU_RS30970	0.14	+0.4
4,574,519	-		PFLU_RS30970	0.14	+1.2
4,574,519	-		PFLU_RS30970	0.14	-1.7
4,574,519	-		PFLU_RS30970	0.14	+0.1
4,574,521	-		PFLU_RS30970	0.15	+1.2
4,574,521	-		PFLU_RS30970	0.15	-2.1
4,574,521	-		PFLU_RS30970	0.15	-0.5
4,574,521	-		PFLU_RS30970	0.15	-1.2
4,574,521	-		PFLU_RS30970	0.15	+1.0
4,574,552	-		PFLU_RS30970	0.26	-0.5
4,574,590	+		PFLU_RS30970	0.41	+1.7
4,574,591	-		PFLU_RS30970	0.41	+2.4
4,574,591	-		PFLU_RS30970	0.41	+0.8
4,574,612	-		PFLU_RS30970	0.49	-0.8
4,574,612	-		PFLU_RS30970	0.49	+1.1
4,574,627	-		PFLU_RS30970	0.55	-0.4
4,574,627	-		PFLU_RS30970	0.55	-0.8
4,574,650	-		PFLU_RS30970	0.64	+0.3
4,574,686	+		PFLU_RS30970	0.78	-1.4
4,574,687	-		PFLU_RS30970	0.78	+0.6
4,574,767	+				-1.7
4,574,767	+				-0.2
4,574,803	+				-0.9
4,574,805	+				+0.6
4,574,805	+				-1.0
4,574,805	+				+0.8
4,574,806	-				-0.0
4,574,858	+				+0.1
4,574,858	+				+0.1
4,574,858	+				-1.7
4,574,858	+				-0.0
4,574,858	+				-1.5
4,574,858	+				+0.6
4,574,858	+				+0.6
4,574,859	-				+1.2
4,574,859	-				+0.8
4,574,859	-				+0.1
4,574,859	-				-0.0
4,574,859	-				+0.2
4,574,859	-				+1.9
4,574,861	+				-0.0
4,574,861	+				-1.2
4,574,861	+				-0.7
4,574,862	-				+0.3
4,574,862	-				+2.6
4,574,888	+				-0.0
4,574,888	+				+0.5
4,574,888	+				+0.6
4,574,888	+				+0.2
4,574,889	-				-0.4
4,574,908	+				-0.2
4,574,909	-				-0.7
4,574,909	-				+1.7
4,574,921	+				+1.3
4,574,922	-				+1.1
4,574,922	-				+0.3
4,574,922	-				+0.6
4,574,948	+				+0.8
4,574,948	+				+0.7
4,574,949	-				-1.7
4,574,949	-				-1.0
4,574,949	-				+0.6
4,574,972	+				-0.4
4,574,973	-				-0.6
4,574,999	+				+1.4
4,575,038	-				-0.2
4,575,038	-				+0.9
4,575,041	+				-0.1
4,575,041	+				-0.2
4,575,041	+				-0.3
4,575,041	+				+0.8
4,575,041	+				-0.2
4,575,042	-				-0.2
4,575,042	-				-2.8
4,575,042	-				+1.0
4,575,086	+				+0.6
4,575,087	-				+0.7
4,575,087	-				-1.4
4,575,119	+				+2.2
4,575,190	+				-0.7
4,575,265	+				+0.6
4,575,281	+				+0.9
4,575,281	+				+0.5
4,575,282	-				+0.4
4,575,341	+				+0.1
4,575,342	-				+0.4
4,575,348	+				+0.6
4,575,349	-				+2.1
4,575,393	+				+1.9
4,575,393	+				+1.4
4,575,394	-				+1.3
4,575,417	-				+0.6
4,575,417	-				+1.9
4,575,417	-				+2.2
4,575,546	+		PFLU_RS31710	0.37	+0.3
4,575,547	-		PFLU_RS31710	0.37	+1.1
4,575,630	+		PFLU_RS31710	0.65	-0.4
4,575,656	+		PFLU_RS31710	0.73	-3.0
4,575,661	-		PFLU_RS31710	0.75	+0.1
4,575,721	+				+0.9
4,575,826	-				+2.6
4,575,850	+				-0.0
4,575,851	-				-1.2
4,575,851	-				+0.5
4,575,899	-				-0.0
4,575,928	+				+1.2
4,575,928	+				-0.6
4,575,942	-				+1.1
4,575,942	-				+0.3
4,575,943	+				-0.2
4,575,955	+				-0.4
4,575,991	+				-0.6
4,576,006	+				+0.2
4,576,022	+				+2.2
4,576,029	-				+1.2
4,576,029	-				-1.4
4,576,051	+				-0.1
4,576,067	+				+0.6
4,576,068	-				-0.4
4,576,122	-				-0.8
4,576,154	+				+0.1
4,576,154	+				-0.4
4,576,154	+				+0.2
4,576,154	+				-1.0
4,576,154	+				-0.3
4,576,154	+				-2.4
4,576,155	-				+0.8
4,576,155	-				-1.1
4,576,195	+				+0.7
4,576,275	+				+0.7
4,576,275	+				-1.9
4,576,275	+				+0.7
4,576,276	-				+0.8
4,576,276	-				+0.4
4,576,276	-				+1.3
4,576,297	+				-2.5
4,576,297	+				-0.0
4,576,297	+				+1.5
4,576,298	-				+0.2
4,576,298	-				-1.3
4,576,298	-				-0.0
4,576,299	+				+0.4
4,576,299	+				+0.1
4,576,300	-				+0.2
4,576,300	-				-1.0
4,576,300	-				+0.3
4,576,300	-				+1.5
4,576,300	-				-0.4
4,576,300	-				-0.7
4,576,300	-				-1.3
4,576,300	-				+1.0
4,576,324	+				+0.3
4,576,324	+				-0.5
4,576,324	+				+0.0
4,576,324	+				+0.8
4,576,324	+				+0.4
4,576,324	+				+1.4
4,576,324	+				-1.0
4,576,324	+				-0.2
4,576,325	-				+1.3
4,576,325	-				-0.6
4,576,325	-				-0.9
4,576,325	-				+0.5
4,576,325	-				+0.0
4,576,325	-				+0.2
4,576,325	-				-1.1
4,576,325	-				-0.4
4,576,325	-				-1.3
4,576,325	-				-3.7
4,576,325	-				+0.9
4,576,325	-				-2.3
4,576,325	-				+1.1
4,576,325	-				-0.7
4,576,325	-				-1.7
4,576,358	-				-0.6
4,576,359	+				-1.5
4,576,359	+				+1.4
4,576,359	+				+0.9
4,576,359	+				+1.5
4,576,359	+				-0.1
4,576,359	+				-0.0
4,576,359	+				-1.2
4,576,359	+				+0.8
4,576,360	-				+1.7
4,576,360	-				-1.4
4,576,360	-				+0.8
4,576,360	-				-1.4
4,576,360	-				-0.2
4,576,360	-				-0.5
4,576,360	-				-1.3
4,576,384	+				+0.3
4,576,384	+				+0.5
4,576,384	+				-1.6
4,576,384	+				+0.3
4,576,384	+				+0.2
4,576,384	+				+1.3
4,576,384	+				-1.9
4,576,384	+				+0.4
4,576,385	-				-1.0
4,576,385	-				+0.5
4,576,385	-				-0.3
4,576,385	-				-1.2
4,576,385	-				-0.2
4,576,385	-				+0.3
4,576,385	-				+1.3
4,576,443	+				+0.3
4,576,443	+				+0.8
4,576,443	+				-1.2
4,576,443	+				+0.8
4,576,443	+				+0.5
4,576,443	+				-0.9
4,576,443	+				-3.6
4,576,443	+				+2.1
4,576,443	+				-0.9
4,576,443	+				+1.0
4,576,444	-				-0.0
4,576,444	-				-0.4
4,576,444	-				+0.3
4,576,444	-				+1.1
4,576,484	+		PFLU_RS20225	0.13	+1.3
4,576,485	-		PFLU_RS20225	0.13	+0.1
4,576,485	-		PFLU_RS20225	0.13	+0.1
4,576,485	-		PFLU_RS20225	0.13	+0.2
4,576,485	-		PFLU_RS20225	0.13	-1.4
4,576,486	+		PFLU_RS20225	0.13	+0.0
4,576,486	+		PFLU_RS20225	0.13	+0.7
4,576,487	-		PFLU_RS20225	0.13	+1.1
4,576,487	-		PFLU_RS20225	0.13	+0.6
4,576,487	-		PFLU_RS20225	0.13	-0.2
4,576,487	-		PFLU_RS20225	0.13	-1.7
4,576,597	+		PFLU_RS20225	0.34	-1.9
4,576,598	-		PFLU_RS20225	0.34	-0.5
4,576,598	-		PFLU_RS20225	0.34	-0.8
4,576,598	-		PFLU_RS20225	0.34	+1.4
4,576,598	-		PFLU_RS20225	0.34	+1.6
4,576,598	-		PFLU_RS20225	0.34	+0.0
4,576,644	+		PFLU_RS20225	0.43	-3.1
4,576,644	+		PFLU_RS20225	0.43	-0.0
4,576,645	-		PFLU_RS20225	0.43	+1.4
4,576,645	-		PFLU_RS20225	0.43	+2.2
4,576,645	-		PFLU_RS20225	0.43	+0.8
4,576,645	-		PFLU_RS20225	0.43	-0.2
4,576,671	-		PFLU_RS20225	0.48	-0.6
4,576,671	-		PFLU_RS20225	0.48	+0.9
4,576,671	-		PFLU_RS20225	0.48	+0.7
4,576,687	-		PFLU_RS20225	0.51	+0.6
4,576,687	-		PFLU_RS20225	0.51	-0.2