Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29490

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
6,545,803	+		PFLU_RS29480	0.36	+1.4
6,545,897	+		PFLU_RS29480	0.48	+3.4
6,545,897	+		PFLU_RS29480	0.48	+3.6
6,545,898	-		PFLU_RS29480	0.48	+1.4
6,545,898	-		PFLU_RS29480	0.48	+3.8
6,545,898	-		PFLU_RS29480	0.48	+4.9
6,545,950	+		PFLU_RS29480	0.55	+4.6
6,545,950	+		PFLU_RS29480	0.55	+2.2
6,545,951	-		PFLU_RS29480	0.55	+2.4
6,545,951	-		PFLU_RS29480	0.55	+0.4
6,545,956	+		PFLU_RS29480	0.55	+2.4
6,545,956	+		PFLU_RS29480	0.55	+5.0
6,545,956	+		PFLU_RS29480	0.55	+4.7
6,545,956	+		PFLU_RS29480	0.55	+3.5
6,545,956	+		PFLU_RS29480	0.55	+0.8
6,545,956	+		PFLU_RS29480	0.55	+4.6
6,545,956	+		PFLU_RS29480	0.55	+3.9
6,545,956	+		PFLU_RS29480	0.55	+3.8
6,545,956	+		PFLU_RS29480	0.55	+1.4
6,545,957	-		PFLU_RS29480	0.56	+4.1
6,545,957	-		PFLU_RS29480	0.56	+2.4
6,545,957	-		PFLU_RS29480	0.56	+1.4
6,545,957	-		PFLU_RS29480	0.56	+3.8
6,545,957	-		PFLU_RS29480	0.56	+3.6
6,545,957	-		PFLU_RS29480	0.56	+4.1
6,545,957	-		PFLU_RS29480	0.56	+2.4
6,545,971	+		PFLU_RS29480	0.57	+2.4
6,545,972	-		PFLU_RS29480	0.57	+0.4
6,546,082	+		PFLU_RS29480	0.72	+1.4
6,546,082	+		PFLU_RS29480	0.72	+4.0
6,546,083	-		PFLU_RS29480	0.72	+0.8
6,546,125	-		PFLU_RS29480	0.77	+0.4
6,546,280	+				+5.4
6,546,281	-				+4.1
6,546,363	+				+1.6
6,546,364	-				-0.3
6,546,364	-				+0.8
6,546,424	+		PFLU_RS29485	0.17	+2.0
6,546,424	+		PFLU_RS29485	0.17	+1.5
6,546,424	+		PFLU_RS29485	0.17	+1.1
6,546,425	-		PFLU_RS29485	0.17	+1.1
6,546,425	-		PFLU_RS29485	0.17	-2.1
6,546,512	+		PFLU_RS29485	0.41	+1.3
6,546,512	+		PFLU_RS29485	0.41	-0.8
6,546,513	-		PFLU_RS29485	0.41	+1.5
6,546,513	-		PFLU_RS29485	0.41	-1.1
6,546,693	+		PFLU_RS29485	0.90	+0.2
6,546,693	+		PFLU_RS29485	0.90	-0.6
6,546,693	+		PFLU_RS29485	0.90	-0.9
6,546,694	-				+0.9
6,546,694	-				-1.5
6,546,703	+				+0.1
6,546,703	+				+0.9
6,546,703	+				+1.0
6,546,703	+				+1.1
6,546,704	-				+0.1
6,546,704	-				-0.1
6,546,940	+		PFLU_RS29490	0.26	+1.7
6,546,940	+		PFLU_RS29490	0.26	-2.7
6,546,941	-		PFLU_RS29490	0.26	-0.2
6,546,941	-		PFLU_RS29490	0.26	-3.3
6,546,941	-		PFLU_RS29490	0.26	-0.1
6,546,941	-		PFLU_RS29490	0.26	-1.9
6,546,970	+		PFLU_RS29490	0.30	-1.7
6,546,970	+		PFLU_RS29490	0.30	-2.0
6,546,970	+		PFLU_RS29490	0.30	-1.8
6,546,970	+		PFLU_RS29490	0.30	-2.4
6,546,970	+		PFLU_RS29490	0.30	-3.0
6,546,970	+		PFLU_RS29490	0.30	-1.2
6,546,971	-		PFLU_RS29490	0.30	-1.4
6,546,971	-		PFLU_RS29490	0.30	-1.9
6,546,971	-		PFLU_RS29490	0.30	-2.4
6,546,971	-		PFLU_RS29490	0.30	-0.3
6,546,971	-		PFLU_RS29490	0.30	-0.9
6,546,971	-		PFLU_RS29490	0.30	-2.6
6,546,971	-		PFLU_RS29490	0.30	+2.4
6,546,971	-		PFLU_RS29490	0.30	-1.3
6,546,971	-		PFLU_RS29490	0.30	-0.6
6,546,978	+		PFLU_RS29490	0.31	-1.3
6,547,135	+		PFLU_RS29490	0.53	+1.8
6,547,136	-		PFLU_RS29490	0.53	-2.1
6,547,136	-		PFLU_RS29490	0.53	-1.9
6,547,136	-		PFLU_RS29490	0.53	-1.4
6,547,136	-		PFLU_RS29490	0.53	-3.2
6,547,286	-		PFLU_RS29490	0.74	+2.8
6,547,361	+		PFLU_RS29490	0.84	-2.0
6,547,362	-		PFLU_RS29490	0.84	+0.2
6,547,362	-		PFLU_RS29490	0.84	-1.2
6,547,362	-		PFLU_RS29490	0.84	-3.0
6,547,389	+		PFLU_RS29490	0.88	-1.2
6,547,389	+		PFLU_RS29490	0.88	+0.1
6,547,390	-		PFLU_RS29490	0.88	+0.8
6,547,390	-		PFLU_RS29490	0.88	-1.4
6,547,414	+				-0.0
6,547,414	+				-1.2
6,547,414	+				-0.6
6,547,414	+				-1.5
6,547,414	+				-1.8
6,547,415	-				+0.8
6,547,415	-				+0.3
6,547,415	-				-0.2
6,547,415	-				+0.8
6,547,415	-				+0.3
6,547,415	-				-0.8
6,547,476	-				+0.7
6,547,476	-				-1.3
6,547,489	+				+0.4
6,547,516	+				-2.7
6,547,516	+				-2.1
6,547,516	+				+0.2
6,547,517	-				+0.1
6,547,518	+				+1.2
6,547,518	+				+1.0
6,547,518	+				+2.0
6,547,518	+				+1.9
6,547,518	+				+0.8
6,547,518	+				+1.0
6,547,518	+				+1.2
6,547,518	+				+2.8
6,547,519	-				+1.1
6,547,519	-				+0.8
6,547,519	-				-0.3
6,547,519	-				-0.6
6,547,519	-				-1.4
6,547,519	-				-0.4
6,547,519	-				-0.0
6,547,519	-				-0.3
6,547,598	+				-0.1
6,547,599	-				+1.2
6,547,617	-				-0.7
6,547,654	+				+0.1
6,547,654	+				-0.3
6,547,654	+				-0.2
6,547,655	-				+0.4
6,547,655	-				-0.5
6,547,655	-				+1.9
6,547,707	+				-0.3
6,547,707	+				-0.7
6,547,707	+				-1.3
6,547,707	+				+0.1
6,547,708	-				+1.3
6,547,708	-				-1.1
6,547,708	-				-0.3
6,547,708	-				+0.4
6,547,708	-				+0.2
6,547,708	-				+0.4
6,547,752	-		PFLU_RS29495	0.11	+0.1
6,548,004	+		PFLU_RS29495	0.40	-1.8
6,548,005	-		PFLU_RS29495	0.40	+1.6
6,548,005	-		PFLU_RS29495	0.40	-0.6
6,548,280	+		PFLU_RS29495	0.72	-1.9
6,548,280	+		PFLU_RS29495	0.72	-1.9
6,548,280	+		PFLU_RS29495	0.72	-0.8
6,548,280	+		PFLU_RS29495	0.72	+0.1
6,548,281	-		PFLU_RS29495	0.72	+0.2
6,548,281	-		PFLU_RS29495	0.72	+1.5
6,548,281	-		PFLU_RS29495	0.72	+1.1
6,548,422	+		PFLU_RS29495	0.88	-1.7
6,548,422	+		PFLU_RS29495	0.88	+1.9
6,548,422	+		PFLU_RS29495	0.88	+0.5
6,548,422	+		PFLU_RS29495	0.88	-0.8
6,548,422	+		PFLU_RS29495	0.88	+0.1
6,548,423	-		PFLU_RS29495	0.88	-1.4
6,548,423	-		PFLU_RS29495	0.88	-1.1
6,548,423	-		PFLU_RS29495	0.88	+0.2
6,548,423	-		PFLU_RS29495	0.88	+1.9