Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28215

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
6,281,528	+		PFLU_RS28205	0.33	+0.5
6,281,528	+		PFLU_RS28205	0.33	-0.3
6,281,528	+		PFLU_RS28205	0.33	-0.7
6,281,528	+		PFLU_RS28205	0.33	+0.9
6,281,529	-		PFLU_RS28205	0.33	-1.6
6,281,529	-		PFLU_RS28205	0.33	-0.9
6,281,529	-		PFLU_RS28205	0.33	+0.3
6,281,529	-		PFLU_RS28205	0.33	-0.5
6,281,529	-		PFLU_RS28205	0.33	-3.0
6,281,529	-		PFLU_RS28205	0.33	+0.0
6,281,529	-		PFLU_RS28205	0.33	+1.1
6,281,529	-		PFLU_RS28205	0.33	+1.4
6,281,601	+		PFLU_RS28205	0.41	+1.7
6,281,601	+		PFLU_RS28205	0.41	-2.1
6,281,601	+		PFLU_RS28205	0.41	+0.4
6,281,601	+		PFLU_RS28205	0.41	+0.4
6,281,602	-		PFLU_RS28205	0.42	+0.6
6,281,602	-		PFLU_RS28205	0.42	-0.4
6,281,602	-		PFLU_RS28205	0.42	+0.8
6,281,602	-		PFLU_RS28205	0.42	+2.6
6,281,624	+		PFLU_RS28205	0.44	-1.1
6,281,625	-		PFLU_RS28205	0.44	-0.4
6,281,625	-		PFLU_RS28205	0.44	-0.1
6,281,625	-		PFLU_RS28205	0.44	-0.1
6,281,625	-		PFLU_RS28205	0.44	+0.8
6,281,668	+		PFLU_RS28205	0.49	+1.2
6,281,668	+		PFLU_RS28205	0.49	+0.5
6,281,668	+		PFLU_RS28205	0.49	+0.1
6,281,669	-		PFLU_RS28205	0.49	-0.2
6,281,669	-		PFLU_RS28205	0.49	+0.7
6,281,669	-		PFLU_RS28205	0.49	-0.4
6,281,741	+		PFLU_RS28205	0.57	+0.2
6,281,742	-		PFLU_RS28205	0.57	+0.6
6,281,742	-		PFLU_RS28205	0.57	+2.9
6,281,745	+		PFLU_RS28205	0.57	-2.0
6,281,745	+		PFLU_RS28205	0.57	-1.3
6,281,745	+		PFLU_RS28205	0.57	-2.4
6,281,745	+		PFLU_RS28205	0.57	-1.8
6,281,745	+		PFLU_RS28205	0.57	-0.5
6,281,746	-		PFLU_RS28205	0.57	+1.5
6,281,746	-		PFLU_RS28205	0.57	-0.2
6,281,796	+		PFLU_RS28205	0.63	-1.0
6,281,797	-		PFLU_RS28205	0.63	+1.1
6,281,797	-		PFLU_RS28205	0.63	+0.4
6,281,841	+		PFLU_RS28205	0.68	-0.5
6,281,842	-		PFLU_RS28205	0.68	+0.5
6,281,867	+		PFLU_RS28205	0.71	+2.1
6,281,867	+		PFLU_RS28205	0.71	-0.4
6,281,867	+		PFLU_RS28205	0.71	-2.2
6,281,867	+		PFLU_RS28205	0.71	-1.8
6,281,868	-		PFLU_RS28205	0.71	+0.4
6,281,868	-		PFLU_RS28205	0.71	-0.6
6,281,868	-		PFLU_RS28205	0.71	-0.8
6,281,868	-		PFLU_RS28205	0.71	-0.4
6,281,975	+		PFLU_RS28205	0.83	+0.1
6,281,976	-		PFLU_RS28205	0.83	-0.5
6,281,976	-		PFLU_RS28205	0.83	+0.9
6,282,133	+				+1.5
6,282,133	+				-2.6
6,282,134	-				+0.1
6,282,134	-				+0.4
6,282,297	+		PFLU_RS28210	0.41	+0.4
6,282,308	+		PFLU_RS28210	0.44	+0.9
6,282,308	+		PFLU_RS28210	0.44	-0.1
6,282,308	+		PFLU_RS28210	0.44	-2.7
6,282,309	-		PFLU_RS28210	0.44	+0.1
6,282,309	-		PFLU_RS28210	0.44	+1.1
6,282,309	-		PFLU_RS28210	0.44	-0.5
6,282,508	+				+1.0
6,282,508	+				+0.7
6,282,508	+				-1.3
6,282,508	+				-1.6
6,282,508	+				-2.1
6,282,508	+				+1.2
6,282,508	+				+0.2
6,282,508	+				-1.6
6,282,508	+				-0.1
6,282,508	+				+0.0
6,282,508	+				-0.1
6,282,508	+				+0.4
6,282,508	+				+0.7
6,282,508	+				+0.3
6,282,508	+				-0.4
6,282,508	+				+1.2
6,282,508	+				+0.6
6,282,508	+				+0.4
6,282,508	+				+0.8
6,282,509	-				+2.2
6,282,509	-				+1.8
6,282,509	-				+1.5
6,282,509	-				+0.2
6,282,509	-				-1.6
6,282,509	-				-0.0
6,282,509	-				+1.0
6,282,509	-				-0.4
6,282,509	-				+0.4
6,282,509	-				-0.3
6,282,509	-				-2.2
6,282,509	-				-0.6
6,282,509	-				-0.2
6,282,509	-				+1.0
6,282,509	-				+1.0
6,282,509	-				+0.4
6,282,509	-				-1.2
6,282,509	-				-0.1
6,282,509	-				+1.5
6,282,509	-				+0.6
6,282,509	-				-1.2
6,282,544	+				-0.6
6,282,544	+				-0.2
6,282,545	-				-0.9
6,282,545	-				+1.6
6,282,545	-				+2.0
6,282,644	+		PFLU_RS28215	0.11	+1.5
6,282,644	+		PFLU_RS28215	0.11	-1.4
6,282,644	+		PFLU_RS28215	0.11	-1.0
6,282,644	+		PFLU_RS28215	0.11	+0.8
6,282,644	+		PFLU_RS28215	0.11	-1.6
6,282,644	+		PFLU_RS28215	0.11	-2.1
6,282,644	+		PFLU_RS28215	0.11	+0.8
6,282,645	-		PFLU_RS28215	0.11	-0.1
6,282,645	-		PFLU_RS28215	0.11	+0.2
6,282,645	-		PFLU_RS28215	0.11	-0.2
6,282,645	-		PFLU_RS28215	0.11	-1.1
6,282,645	-		PFLU_RS28215	0.11	+1.2
6,282,862	-		PFLU_RS28215	0.28	-0.5
6,282,880	-		PFLU_RS28215	0.30	-1.5
6,283,005	-		PFLU_RS28215	0.40	+1.7
6,283,185	+		PFLU_RS28215	0.55	+1.1
6,283,185	+		PFLU_RS28215	0.55	+0.5
6,283,185	+		PFLU_RS28215	0.55	+1.2
6,283,185	+		PFLU_RS28215	0.55	-0.5
6,283,185	+		PFLU_RS28215	0.55	+0.3
6,283,186	-		PFLU_RS28215	0.55	-0.1
6,283,271	-		PFLU_RS28215	0.62	+0.3
6,283,432	+		PFLU_RS28215	0.75	-0.5
6,283,432	+		PFLU_RS28215	0.75	-1.4
6,283,432	+		PFLU_RS28215	0.75	+0.5
6,283,432	+		PFLU_RS28215	0.75	+1.3
6,283,432	+		PFLU_RS28215	0.75	+0.1
6,283,432	+		PFLU_RS28215	0.75	-0.6
6,283,432	+		PFLU_RS28215	0.75	-1.7
6,283,432	+		PFLU_RS28215	0.75	+0.3
6,283,432	+		PFLU_RS28215	0.75	+1.8
6,283,432	+		PFLU_RS28215	0.75	+0.3
6,283,432	+		PFLU_RS28215	0.75	+1.1
6,283,433	-		PFLU_RS28215	0.75	+1.0
6,283,433	-		PFLU_RS28215	0.75	+1.8
6,283,433	-		PFLU_RS28215	0.75	-0.2
6,283,433	-		PFLU_RS28215	0.75	+1.4
6,283,433	-		PFLU_RS28215	0.75	-1.0
6,283,433	-		PFLU_RS28215	0.75	-1.9
6,283,433	-		PFLU_RS28215	0.75	-1.4
6,283,433	-		PFLU_RS28215	0.75	+0.6
6,283,450	+		PFLU_RS28215	0.76	+0.2
6,283,590	+		PFLU_RS28215	0.88	-2.9
6,283,590	+		PFLU_RS28215	0.88	+1.6
6,283,590	+		PFLU_RS28215	0.88	+0.9
6,283,590	+		PFLU_RS28215	0.88	+0.9
6,283,590	+		PFLU_RS28215	0.88	+0.8
6,283,591	-		PFLU_RS28215	0.88	+0.6
6,283,591	-		PFLU_RS28215	0.88	+0.2
6,283,777	-				-0.5
6,283,822	+				+0.9
6,284,173	+		PFLU_RS28220	0.36	+0.1
6,284,173	+		PFLU_RS28220	0.36	-0.0
6,284,173	+		PFLU_RS28220	0.36	-0.0
6,284,173	+		PFLU_RS28220	0.36	-2.4
6,284,174	-		PFLU_RS28220	0.36	+1.1
6,284,174	-		PFLU_RS28220	0.36	-1.0
6,284,427	+		PFLU_RS28220	0.64	+0.4
6,284,428	-		PFLU_RS28220	0.64	+0.2
6,284,428	-		PFLU_RS28220	0.64	-0.1
6,284,428	-		PFLU_RS28220	0.64	-1.1
6,284,428	-		PFLU_RS28220	0.64	-0.2
6,284,471	+		PFLU_RS28220	0.69	+0.3
6,284,471	+		PFLU_RS28220	0.69	+0.5
6,284,471	+		PFLU_RS28220	0.69	+0.6
6,284,472	-		PFLU_RS28220	0.69	+1.3
6,284,472	-		PFLU_RS28220	0.69	-0.5
6,284,472	-		PFLU_RS28220	0.69	+0.3
6,284,472	-		PFLU_RS28220	0.69	+1.1
6,284,522	+		PFLU_RS28220	0.75	+0.6
6,284,523	-		PFLU_RS28220	0.75	+0.9
6,284,652	-		PFLU_RS28220	0.89	-0.1
6,284,686	+				+0.2
6,284,687	-				+0.5
6,284,687	-				-2.4