Experiment: NAG (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25140 and PFLU_RS25145 are separated by 270 nucleotides PFLU_RS25145 and PFLU_RS25150 are separated by 10 nucleotides PFLU_RS25150 and PFLU_RS25155 are separated by 192 nucleotides
PFLU_RS25140: PFLU_RS25140 - alkaline phosphatase family protein, at 5,620,349 to 5,622,238
_RS25140
PFLU_RS25145: PFLU_RS25145 - type II toxin-antitoxin system RelE/ParE family toxin, at 5,622,509 to 5,622,772
_RS25145
PFLU_RS25150: PFLU_RS25150 - Fis family transcriptional regulator, at 5,622,783 to 5,623,091
_RS25150
PFLU_RS25155: PFLU_RS25155 - sensor domain-containing diguanylate cyclase, at 5,623,284 to 5,624,294
_RS25155
Position (kb) 5622
5623
5624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.836 kb on + strand, within PFLU_RS25140 at 5621.837 kb on - strand, within PFLU_RS25140 at 5621.838 kb on + strand, within PFLU_RS25140 at 5621.838 kb on + strand, within PFLU_RS25140 at 5621.838 kb on + strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.839 kb on - strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.867 kb on + strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.868 kb on - strand, within PFLU_RS25140 at 5621.894 kb on + strand, within PFLU_RS25140 at 5621.894 kb on + strand, within PFLU_RS25140 at 5621.894 kb on + strand, within PFLU_RS25140 at 5621.895 kb on - strand, within PFLU_RS25140 at 5621.895 kb on - strand, within PFLU_RS25140 at 5621.906 kb on + strand, within PFLU_RS25140 at 5622.091 kb on + strand at 5622.092 kb on - strand at 5622.186 kb on - strand at 5622.186 kb on - strand at 5622.236 kb on + strand at 5622.237 kb on - strand at 5622.253 kb on - strand at 5622.441 kb on + strand at 5622.441 kb on + strand at 5622.441 kb on + strand at 5622.441 kb on + strand at 5622.442 kb on - strand at 5622.516 kb on + strand at 5622.516 kb on + strand at 5622.516 kb on + strand at 5622.516 kb on + strand at 5622.517 kb on - strand at 5622.517 kb on - strand at 5622.520 kb on + strand at 5622.521 kb on - strand at 5622.521 kb on - strand at 5622.521 kb on - strand at 5622.521 kb on - strand at 5622.540 kb on + strand, within PFLU_RS25145 at 5622.540 kb on + strand, within PFLU_RS25145 at 5622.540 kb on + strand, within PFLU_RS25145 at 5622.540 kb on + strand, within PFLU_RS25145 at 5622.540 kb on + strand, within PFLU_RS25145 at 5622.540 kb on + strand, within PFLU_RS25145 at 5622.541 kb on - strand, within PFLU_RS25145 at 5622.541 kb on - strand, within PFLU_RS25145 at 5622.545 kb on - strand, within PFLU_RS25145 at 5622.545 kb on - strand, within PFLU_RS25145 at 5622.647 kb on - strand, within PFLU_RS25145 at 5622.706 kb on + strand, within PFLU_RS25145 at 5622.733 kb on - strand, within PFLU_RS25145 at 5622.768 kb on + strand at 5622.768 kb on + strand at 5622.768 kb on + strand at 5622.768 kb on + strand at 5622.768 kb on + strand at 5622.769 kb on - strand at 5622.769 kb on - strand at 5622.769 kb on - strand at 5622.769 kb on - strand at 5622.795 kb on - strand at 5622.848 kb on - strand, within PFLU_RS25150 at 5622.848 kb on - strand, within PFLU_RS25150 at 5622.848 kb on - strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.938 kb on + strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.939 kb on - strand, within PFLU_RS25150 at 5622.944 kb on + strand, within PFLU_RS25150 at 5622.945 kb on - strand, within PFLU_RS25150 at 5622.945 kb on - strand, within PFLU_RS25150 at 5622.945 kb on - strand, within PFLU_RS25150 at 5622.945 kb on - strand, within PFLU_RS25150 at 5622.945 kb on - strand, within PFLU_RS25150 at 5622.945 kb on - strand, within PFLU_RS25150 at 5622.961 kb on + strand, within PFLU_RS25150 at 5623.057 kb on + strand, within PFLU_RS25150 at 5623.057 kb on + strand, within PFLU_RS25150 at 5623.057 kb on + strand, within PFLU_RS25150 at 5623.057 kb on + strand, within PFLU_RS25150 at 5623.057 kb on + strand, within PFLU_RS25150 at 5623.058 kb on - strand, within PFLU_RS25150 at 5623.058 kb on - strand, within PFLU_RS25150 at 5623.058 kb on - strand, within PFLU_RS25150 at 5623.058 kb on - strand, within PFLU_RS25150 at 5623.058 kb on - strand, within PFLU_RS25150 at 5623.129 kb on + strand at 5623.166 kb on + strand at 5623.166 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.172 kb on + strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.173 kb on - strand at 5623.208 kb on + strand at 5623.208 kb on + strand at 5623.208 kb on + strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.209 kb on - strand at 5623.213 kb on + strand at 5623.292 kb on + strand at 5623.292 kb on + strand at 5623.293 kb on - strand at 5623.509 kb on + strand, within PFLU_RS25155 at 5623.509 kb on + strand, within PFLU_RS25155 at 5623.510 kb on - strand, within PFLU_RS25155 at 5623.510 kb on - strand, within PFLU_RS25155 at 5623.510 kb on - strand, within PFLU_RS25155 at 5623.539 kb on + strand, within PFLU_RS25155 at 5623.539 kb on + strand, within PFLU_RS25155 at 5623.539 kb on + strand, within PFLU_RS25155 at 5623.540 kb on - strand, within PFLU_RS25155 at 5623.540 kb on - strand, within PFLU_RS25155 at 5623.602 kb on + strand, within PFLU_RS25155 at 5623.602 kb on + strand, within PFLU_RS25155 at 5623.602 kb on + strand, within PFLU_RS25155 at 5623.602 kb on + strand, within PFLU_RS25155 at 5623.602 kb on + strand, within PFLU_RS25155 at 5623.602 kb on + strand, within PFLU_RS25155 at 5623.602 kb on + strand, within PFLU_RS25155 at 5623.603 kb on - strand, within PFLU_RS25155 at 5623.627 kb on - strand, within PFLU_RS25155 at 5623.685 kb on + strand, within PFLU_RS25155 at 5623.686 kb on - strand, within PFLU_RS25155 at 5623.935 kb on - strand, within PFLU_RS25155 at 5624.002 kb on + strand, within PFLU_RS25155 at 5624.030 kb on + strand, within PFLU_RS25155 at 5624.031 kb on - strand, within PFLU_RS25155 at 5624.031 kb on - strand, within PFLU_RS25155
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C); with MOPS remove 5,621,836 + PFLU_RS25140 0.79 +0.6 5,621,836 + PFLU_RS25140 0.79 -0.3 5,621,836 + PFLU_RS25140 0.79 +0.3 5,621,836 + PFLU_RS25140 0.79 +0.8 5,621,836 + PFLU_RS25140 0.79 +0.4 5,621,836 + PFLU_RS25140 0.79 +0.7 5,621,836 + PFLU_RS25140 0.79 -2.1 5,621,836 + PFLU_RS25140 0.79 -0.8 5,621,837 - PFLU_RS25140 0.79 -0.7 5,621,838 + PFLU_RS25140 0.79 -0.4 5,621,838 + PFLU_RS25140 0.79 -0.4 5,621,838 + PFLU_RS25140 0.79 +0.8 5,621,839 - PFLU_RS25140 0.79 +0.7 5,621,839 - PFLU_RS25140 0.79 +0.4 5,621,839 - PFLU_RS25140 0.79 +1.1 5,621,839 - PFLU_RS25140 0.79 +0.6 5,621,839 - PFLU_RS25140 0.79 -0.1 5,621,839 - PFLU_RS25140 0.79 +1.8 5,621,839 - PFLU_RS25140 0.79 +1.4 5,621,839 - PFLU_RS25140 0.79 +0.7 5,621,867 + PFLU_RS25140 0.80 -2.7 5,621,867 + PFLU_RS25140 0.80 +0.1 5,621,867 + PFLU_RS25140 0.80 +1.0 5,621,867 + PFLU_RS25140 0.80 -0.4 5,621,867 + PFLU_RS25140 0.80 +0.1 5,621,867 + PFLU_RS25140 0.80 +0.9 5,621,867 + PFLU_RS25140 0.80 -1.8 5,621,867 + PFLU_RS25140 0.80 -1.4 5,621,867 + PFLU_RS25140 0.80 -1.5 5,621,867 + PFLU_RS25140 0.80 -0.1 5,621,867 + PFLU_RS25140 0.80 +0.5 5,621,867 + PFLU_RS25140 0.80 +0.8 5,621,868 - PFLU_RS25140 0.80 +0.1 5,621,868 - PFLU_RS25140 0.80 +0.1 5,621,868 - PFLU_RS25140 0.80 +1.1 5,621,868 - PFLU_RS25140 0.80 +0.4 5,621,868 - PFLU_RS25140 0.80 +0.9 5,621,868 - PFLU_RS25140 0.80 -1.1 5,621,868 - PFLU_RS25140 0.80 -1.0 5,621,868 - PFLU_RS25140 0.80 +1.2 5,621,868 - PFLU_RS25140 0.80 +0.1 5,621,868 - PFLU_RS25140 0.80 -0.7 5,621,868 - PFLU_RS25140 0.80 +0.8 5,621,894 + PFLU_RS25140 0.82 -1.1 5,621,894 + PFLU_RS25140 0.82 +0.3 5,621,894 + PFLU_RS25140 0.82 -2.4 5,621,895 - PFLU_RS25140 0.82 +0.5 5,621,895 - PFLU_RS25140 0.82 +0.4 5,621,906 + PFLU_RS25140 0.82 -0.4 5,622,091 + -1.3 5,622,092 - -0.8 5,622,186 - +0.8 5,622,186 - +0.1 5,622,236 + -0.4 5,622,237 - -0.3 5,622,253 - -1.1 5,622,441 + -0.3 5,622,441 + +0.7 5,622,441 + +0.0 5,622,441 + -1.6 5,622,442 - -0.4 5,622,516 + +0.2 5,622,516 + +1.0 5,622,516 + +0.9 5,622,516 + +0.7 5,622,517 - +0.7 5,622,517 - +0.2 5,622,520 + -0.2 5,622,521 - +0.1 5,622,521 - -0.6 5,622,521 - +0.4 5,622,521 - +0.2 5,622,540 + PFLU_RS25145 0.12 +0.2 5,622,540 + PFLU_RS25145 0.12 -0.6 5,622,540 + PFLU_RS25145 0.12 +0.7 5,622,540 + PFLU_RS25145 0.12 -3.2 5,622,540 + PFLU_RS25145 0.12 +0.7 5,622,540 + PFLU_RS25145 0.12 -1.0 5,622,541 - PFLU_RS25145 0.12 +0.6 5,622,541 - PFLU_RS25145 0.12 +1.5 5,622,545 - PFLU_RS25145 0.14 -1.3 5,622,545 - PFLU_RS25145 0.14 -1.6 5,622,647 - PFLU_RS25145 0.52 +1.4 5,622,706 + PFLU_RS25145 0.75 +1.1 5,622,733 - PFLU_RS25145 0.85 -0.9 5,622,768 + +2.1 5,622,768 + -0.1 5,622,768 + -0.3 5,622,768 + +1.4 5,622,768 + +0.1 5,622,769 - +0.2 5,622,769 - -1.2 5,622,769 - +0.4 5,622,769 - +0.6 5,622,795 - -0.1 5,622,848 - PFLU_RS25150 0.21 -0.4 5,622,848 - PFLU_RS25150 0.21 -0.4 5,622,848 - PFLU_RS25150 0.21 -2.0 5,622,938 + PFLU_RS25150 0.50 -0.0 5,622,938 + PFLU_RS25150 0.50 +1.5 5,622,938 + PFLU_RS25150 0.50 +0.5 5,622,938 + PFLU_RS25150 0.50 +0.2 5,622,938 + PFLU_RS25150 0.50 -0.5 5,622,938 + PFLU_RS25150 0.50 -1.1 5,622,938 + PFLU_RS25150 0.50 +1.9 5,622,938 + PFLU_RS25150 0.50 +0.8 5,622,938 + PFLU_RS25150 0.50 +1.3 5,622,938 + PFLU_RS25150 0.50 -0.9 5,622,939 - PFLU_RS25150 0.50 -1.0 5,622,939 - PFLU_RS25150 0.50 +1.4 5,622,939 - PFLU_RS25150 0.50 -0.6 5,622,939 - PFLU_RS25150 0.50 -0.7 5,622,939 - PFLU_RS25150 0.50 -0.4 5,622,939 - PFLU_RS25150 0.50 -1.6 5,622,939 - PFLU_RS25150 0.50 -0.3 5,622,939 - PFLU_RS25150 0.50 -0.3 5,622,939 - PFLU_RS25150 0.50 -0.6 5,622,939 - PFLU_RS25150 0.50 -0.4 5,622,939 - PFLU_RS25150 0.50 -0.4 5,622,939 - PFLU_RS25150 0.50 -0.6 5,622,944 + PFLU_RS25150 0.52 -0.0 5,622,945 - PFLU_RS25150 0.52 -0.8 5,622,945 - PFLU_RS25150 0.52 -0.9 5,622,945 - PFLU_RS25150 0.52 -0.8 5,622,945 - PFLU_RS25150 0.52 -1.5 5,622,945 - PFLU_RS25150 0.52 +0.9 5,622,945 - PFLU_RS25150 0.52 -1.1 5,622,961 + PFLU_RS25150 0.58 -0.0 5,623,057 + PFLU_RS25150 0.89 +1.9 5,623,057 + PFLU_RS25150 0.89 -1.6 5,623,057 + PFLU_RS25150 0.89 -0.4 5,623,057 + PFLU_RS25150 0.89 +0.5 5,623,057 + PFLU_RS25150 0.89 +0.1 5,623,058 - PFLU_RS25150 0.89 -1.9 5,623,058 - PFLU_RS25150 0.89 +0.1 5,623,058 - PFLU_RS25150 0.89 +1.4 5,623,058 - PFLU_RS25150 0.89 -0.5 5,623,058 - PFLU_RS25150 0.89 +0.5 5,623,129 + +1.5 5,623,166 + +0.4 5,623,166 + -0.4 5,623,172 + +1.0 5,623,172 + +1.2 5,623,172 + -1.1 5,623,172 + +0.7 5,623,172 + -1.2 5,623,172 + +1.5 5,623,172 + -0.1 5,623,172 + -2.9 5,623,172 + -0.4 5,623,172 + +0.9 5,623,172 + +2.3 5,623,172 + +0.8 5,623,172 + +0.9 5,623,172 + +0.9 5,623,172 + +0.7 5,623,172 + +0.9 5,623,172 + +0.3 5,623,172 + +1.0 5,623,173 - +1.1 5,623,173 - +0.5 5,623,173 - -0.3 5,623,173 - +2.1 5,623,173 - +0.7 5,623,173 - -0.9 5,623,173 - -2.5 5,623,173 - +1.1 5,623,173 - +0.0 5,623,173 - +0.9 5,623,173 - +0.8 5,623,208 + +1.2 5,623,208 + +0.9 5,623,208 + -0.1 5,623,209 - -0.6 5,623,209 - +1.2 5,623,209 - +1.1 5,623,209 - -0.6 5,623,209 - -0.5 5,623,209 - -0.4 5,623,209 - -1.5 5,623,209 - -1.2 5,623,209 - +0.5 5,623,209 - +0.4 5,623,213 + -2.4 5,623,292 + -0.1 5,623,292 + +1.4 5,623,293 - +0.0 5,623,509 + PFLU_RS25155 0.22 +0.1 5,623,509 + PFLU_RS25155 0.22 +0.1 5,623,510 - PFLU_RS25155 0.22 +0.8 5,623,510 - PFLU_RS25155 0.22 -1.1 5,623,510 - PFLU_RS25155 0.22 -0.4 5,623,539 + PFLU_RS25155 0.25 -1.4 5,623,539 + PFLU_RS25155 0.25 +1.4 5,623,539 + PFLU_RS25155 0.25 +0.9 5,623,540 - PFLU_RS25155 0.25 -2.6 5,623,540 - PFLU_RS25155 0.25 +0.0 5,623,602 + PFLU_RS25155 0.31 +0.5 5,623,602 + PFLU_RS25155 0.31 -0.5 5,623,602 + PFLU_RS25155 0.31 -1.9 5,623,602 + PFLU_RS25155 0.31 +1.3 5,623,602 + PFLU_RS25155 0.31 -0.1 5,623,602 + PFLU_RS25155 0.31 +0.2 5,623,602 + PFLU_RS25155 0.31 +0.8 5,623,603 - PFLU_RS25155 0.32 -2.5 5,623,627 - PFLU_RS25155 0.34 -0.9 5,623,685 + PFLU_RS25155 0.40 +0.2 5,623,686 - PFLU_RS25155 0.40 -1.6 5,623,935 - PFLU_RS25155 0.64 +0.4 5,624,002 + PFLU_RS25155 0.71 +1.1 5,624,030 + PFLU_RS25155 0.74 +2.2 5,624,031 - PFLU_RS25155 0.74 +0.7 5,624,031 - PFLU_RS25155 0.74 -0.1
Or see this region's nucleotide sequence