Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22260

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,003,119	+				+0.0
5,003,119	+				+1.5
5,003,323	+		PFLU_RS22250	0.83	+1.7
5,003,324	-		PFLU_RS22250	0.84	-0.6
5,003,324	-		PFLU_RS22250	0.84	-0.0
5,003,324	-		PFLU_RS22250	0.84	-1.1
5,003,324	-		PFLU_RS22250	0.84	-1.5
5,003,351	+				-0.7
5,003,351	+				-1.6
5,003,352	-				-1.4
5,003,352	-				+0.6
5,003,404	+				-1.0
5,003,404	+				+0.1
5,003,461	+		PFLU_RS22255	0.17	-1.2
5,003,542	+		PFLU_RS22255	0.30	+0.1
5,003,542	+		PFLU_RS22255	0.30	-0.4
5,003,542	+		PFLU_RS22255	0.30	+0.5
5,003,542	+		PFLU_RS22255	0.30	+0.5
5,003,542	+		PFLU_RS22255	0.30	+0.3
5,003,542	+		PFLU_RS22255	0.30	-0.8
5,003,542	+		PFLU_RS22255	0.30	-0.6
5,003,542	+		PFLU_RS22255	0.30	-0.2
5,003,542	+		PFLU_RS22255	0.30	-0.4
5,003,542	+		PFLU_RS22255	0.30	+0.3
5,003,542	+		PFLU_RS22255	0.30	-1.7
5,003,542	+		PFLU_RS22255	0.30	+0.3
5,003,542	+		PFLU_RS22255	0.30	-0.5
5,003,542	+		PFLU_RS22255	0.30	+0.3
5,003,542	+		PFLU_RS22255	0.30	-1.7
5,003,542	+		PFLU_RS22255	0.30	+0.1
5,003,543	-		PFLU_RS22255	0.30	+0.8
5,003,543	-		PFLU_RS22255	0.30	+1.4
5,003,543	-		PFLU_RS22255	0.30	+0.1
5,003,543	-		PFLU_RS22255	0.30	-1.0
5,003,543	-		PFLU_RS22255	0.30	+0.3
5,003,543	-		PFLU_RS22255	0.30	+0.8
5,003,543	-		PFLU_RS22255	0.30	-0.8
5,003,543	-		PFLU_RS22255	0.30	+1.5
5,003,543	-		PFLU_RS22255	0.30	-2.5
5,003,543	-		PFLU_RS22255	0.30	-0.4
5,003,543	-		PFLU_RS22255	0.30	+1.5
5,003,543	-		PFLU_RS22255	0.30	+1.1
5,003,543	-		PFLU_RS22255	0.30	-1.4
5,003,543	-		PFLU_RS22255	0.30	+0.3
5,003,543	-		PFLU_RS22255	0.30	-0.1
5,003,718	+		PFLU_RS22255	0.59	-1.4
5,003,719	-		PFLU_RS22255	0.59	+0.8
5,003,797	+		PFLU_RS22255	0.72	+0.1
5,003,797	+		PFLU_RS22255	0.72	-0.4
5,003,797	+		PFLU_RS22255	0.72	+0.4
5,003,797	+		PFLU_RS22255	0.72	+0.0
5,003,798	-		PFLU_RS22255	0.72	+0.5
5,003,798	-		PFLU_RS22255	0.72	-1.0
5,003,798	-		PFLU_RS22255	0.72	+0.5
5,003,802	-		PFLU_RS22255	0.72	+0.2
5,003,802	-		PFLU_RS22255	0.72	+0.5
5,003,802	-		PFLU_RS22255	0.72	+0.7
5,003,862	+		PFLU_RS22255	0.82	+2.6
5,003,862	+		PFLU_RS22255	0.82	-0.8
5,003,863	-		PFLU_RS22255	0.82	+2.1
5,003,863	-		PFLU_RS22255	0.82	-0.6
5,003,863	-		PFLU_RS22255	0.82	+1.3
5,003,889	+		PFLU_RS22255	0.87	-1.3
5,003,889	+		PFLU_RS22255	0.87	+0.7
5,003,890	-		PFLU_RS22255	0.87	+0.8
5,003,890	-		PFLU_RS22255	0.87	-0.9
5,003,910	+				-0.1
5,003,911	-				+0.2
5,003,911	-				-2.4
5,003,975	+				-0.8
5,003,976	-				-0.1
5,004,045	+		PFLU_RS31775	0.41	+0.7
5,004,045	+		PFLU_RS31775	0.41	+2.0
5,004,045	+		PFLU_RS31775	0.41	+1.6
5,004,045	+		PFLU_RS31775	0.41	+2.2
5,004,045	+		PFLU_RS31775	0.41	+0.3
5,004,045	+		PFLU_RS31775	0.41	-0.4
5,004,046	-		PFLU_RS31775	0.42	+1.9
5,004,046	-		PFLU_RS31775	0.42	-0.9
5,004,046	-		PFLU_RS31775	0.42	+0.6
5,004,046	-		PFLU_RS31775	0.42	+0.1
5,004,046	-		PFLU_RS31775	0.42	-0.2
5,004,046	-		PFLU_RS31775	0.42	+1.4
5,004,068	+		PFLU_RS31775	0.54	+1.4
5,004,150	+				-2.6
5,004,150	+				+1.4
5,004,207	+				+0.4
5,004,208	-				+0.9
5,004,244	+		PFLU_RS22260	0.11	+1.5
5,004,245	-		PFLU_RS22260	0.11	+0.9
5,004,252	+		PFLU_RS22260	0.12	-0.5
5,004,252	+		PFLU_RS22260	0.12	-1.9
5,004,252	+		PFLU_RS22260	0.12	-0.8
5,004,252	+		PFLU_RS22260	0.12	+1.6
5,004,253	-		PFLU_RS22260	0.12	+0.4
5,004,253	-		PFLU_RS22260	0.12	-0.4
5,004,257	-		PFLU_RS22260	0.13	+0.4
5,004,428	+		PFLU_RS22260	0.28	-2.0
5,004,428	+		PFLU_RS22260	0.28	+1.1
5,004,428	+		PFLU_RS22260	0.28	+0.9
5,004,428	+		PFLU_RS22260	0.28	-1.6
5,004,429	-		PFLU_RS22260	0.28	-0.6
5,004,429	-		PFLU_RS22260	0.28	+1.2
5,004,429	-		PFLU_RS22260	0.28	+2.3
5,004,429	-		PFLU_RS22260	0.28	+1.1
5,004,429	-		PFLU_RS22260	0.28	-0.2
5,004,429	-		PFLU_RS22260	0.28	+1.0
5,004,429	-		PFLU_RS22260	0.28	+1.9
5,004,734	-		PFLU_RS22260	0.55	-2.0
5,004,734	-		PFLU_RS22260	0.55	-0.9
5,004,734	-		PFLU_RS22260	0.55	+1.0
5,004,734	-		PFLU_RS22260	0.55	+0.1
5,004,734	-		PFLU_RS22260	0.55	+1.3
5,005,149	+				+0.8
5,005,149	+				-1.0
5,005,149	+				+1.0
5,005,149	+				+0.6
5,005,149	+				+0.5
5,005,149	+				+1.0
5,005,149	+				+0.6
5,005,149	+				+0.6
5,005,149	+				+0.2
5,005,149	+				+2.2
5,005,149	+				-1.1
5,005,149	+				-0.8
5,005,149	+				+0.1
5,005,149	+				-0.0
5,005,150	-				+1.4
5,005,150	-				+1.2
5,005,150	-				+1.4
5,005,150	-				+1.1
5,005,150	-				-0.5
5,005,150	-				+0.6
5,005,150	-				+1.0
5,005,150	-				+1.3
5,005,150	-				+0.0
5,005,150	-				+1.0
5,005,150	-				+1.2
5,005,150	-				+1.0
5,005,150	-				+0.2
5,005,203	+				-0.4
5,005,203	+				-2.4
5,005,203	+				+1.0
5,005,203	+				-0.0
5,005,203	+				+0.3
5,005,204	-				+1.0
5,005,204	-				+0.1
5,005,204	-				+1.5
5,005,249	+				+1.5
5,005,249	+				+0.3
5,005,249	+				+3.3
5,005,249	+				+0.2
5,005,250	-				+1.0
5,005,250	-				+0.3
5,005,270	-				+0.1
5,005,293	+				+0.6
5,005,293	+				-0.1
5,005,293	+				-0.1
5,005,293	+				+1.1
5,005,293	+				+0.9
5,005,294	-				-0.2
5,005,294	-				+1.3
5,005,294	-				-2.3
5,005,297	+				+1.7
5,005,297	+				+0.2
5,005,297	+				-0.9
5,005,297	+				+1.3
5,005,297	+				-1.8
5,005,297	+				+0.8
5,005,297	+				-0.3
5,005,297	+				-0.4
5,005,297	+				+1.9
5,005,298	-				-0.6
5,005,298	-				+0.0
5,005,379	+				+0.4
5,005,379	+				-0.7
5,005,379	+				+0.9
5,005,379	+				-0.8
5,005,379	+				+1.0
5,005,380	-				-0.9
5,005,380	-				-1.1
5,005,380	-				+1.4
5,005,380	-				-0.2
5,005,380	-				-1.5
5,005,380	-				+0.1
5,005,521	+				+0.6
5,005,522	-				-0.1
5,005,522	-				+0.9
5,005,522	-				-1.8
5,005,522	-				-0.3
5,005,540	+				-0.1
5,005,541	-				+0.7
5,005,544	+				-2.1
5,005,544	+				-0.9
5,005,545	-				+1.2
5,005,545	-				-0.2
5,005,658	+				-1.2
5,005,795	+				+0.5
5,005,795	+				+0.0
5,005,796	-				+0.7
5,005,796	-				+0.5
5,005,869	-				-0.5
5,006,113	+		PFLU_RS22265	0.14	+0.7
5,006,113	+		PFLU_RS22265	0.14	+0.8
5,006,113	+		PFLU_RS22265	0.14	+0.4
5,006,113	+		PFLU_RS22265	0.14	-3.0
5,006,114	-		PFLU_RS22265	0.15	+0.5
5,006,114	-		PFLU_RS22265	0.15	-0.3
5,006,114	-		PFLU_RS22265	0.15	-0.2
5,006,157	-		PFLU_RS22265	0.16	+1.1
5,006,157	-		PFLU_RS22265	0.16	+0.2
5,006,157	-		PFLU_RS22265	0.16	-0.6
5,006,157	-		PFLU_RS22265	0.16	+0.5