Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22025

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
4,956,036	-		PFLU_RS22015	0.61	-1.4
4,956,036	-		PFLU_RS22015	0.61	+0.6
4,956,134	+		PFLU_RS22015	0.72	-2.6
4,956,134	+		PFLU_RS22015	0.72	-1.1
4,956,134	+		PFLU_RS22015	0.72	+0.0
4,956,134	+		PFLU_RS22015	0.72	+0.0
4,956,134	+		PFLU_RS22015	0.72	-2.7
4,956,134	+		PFLU_RS22015	0.72	+0.5
4,956,134	+		PFLU_RS22015	0.72	-1.4
4,956,134	+		PFLU_RS22015	0.72	-0.1
4,956,135	-		PFLU_RS22015	0.72	+0.0
4,956,135	-		PFLU_RS22015	0.72	+0.1
4,956,167	+		PFLU_RS22015	0.76	-2.0
4,956,167	+		PFLU_RS22015	0.76	+0.0
4,956,167	+		PFLU_RS22015	0.76	-0.1
4,956,167	+		PFLU_RS22015	0.76	-3.4
4,956,167	+		PFLU_RS22015	0.76	-2.4
4,956,167	+		PFLU_RS22015	0.76	+0.0
4,956,168	-		PFLU_RS22015	0.76	-0.0
4,956,168	-		PFLU_RS22015	0.76	-3.0
4,956,168	-		PFLU_RS22015	0.76	-2.7
4,956,412	+				-2.1
4,956,412	+				-1.7
4,956,412	+				+1.0
4,956,412	+				+0.5
4,956,412	+				-1.3
4,956,412	+				+0.3
4,956,412	+				-2.0
4,956,412	+				-0.7
4,956,413	-				-0.8
4,956,413	-				-0.6
4,956,413	-				-1.0
4,956,413	-				-0.2
4,956,413	-				-1.3
4,956,665	+		PFLU_RS22020	0.43	-2.2
4,956,666	-		PFLU_RS22020	0.43	-0.3
4,956,666	-		PFLU_RS22020	0.43	-0.1
4,956,737	+		PFLU_RS22020	0.54	+0.6
4,956,737	+		PFLU_RS22020	0.54	-2.2
4,956,737	+		PFLU_RS22020	0.54	+0.8
4,956,738	-		PFLU_RS22020	0.54	-0.6
4,956,738	-		PFLU_RS22020	0.54	+0.5
4,956,738	-		PFLU_RS22020	0.54	+0.3
4,956,833	+		PFLU_RS22020	0.69	-2.2
4,956,833	+		PFLU_RS22020	0.69	+0.6
4,956,833	+		PFLU_RS22020	0.69	+0.5
4,956,834	-		PFLU_RS22020	0.69	+0.0
4,956,837	+		PFLU_RS22020	0.70	-0.2
4,956,837	+		PFLU_RS22020	0.70	-1.1
4,956,837	+		PFLU_RS22020	0.70	-0.1
4,956,837	+		PFLU_RS22020	0.70	-0.6
4,956,838	-		PFLU_RS22020	0.70	-0.1
4,956,838	-		PFLU_RS22020	0.70	+0.3
4,956,838	-		PFLU_RS22020	0.70	+1.0
4,956,838	-		PFLU_RS22020	0.70	-2.0
4,956,838	-		PFLU_RS22020	0.70	-2.0
4,956,860	+		PFLU_RS22020	0.73	-3.0
4,956,991	+				+0.9
4,957,186	-		PFLU_RS22025	0.11	-2.3
4,957,197	+		PFLU_RS22025	0.12	-1.1
4,957,197	+		PFLU_RS22025	0.12	-4.3
4,957,197	+		PFLU_RS22025	0.12	-2.3
4,957,197	+		PFLU_RS22025	0.12	-0.1
4,957,198	-		PFLU_RS22025	0.12	-1.0
4,957,198	-		PFLU_RS22025	0.12	-1.8
4,957,198	-		PFLU_RS22025	0.12	-1.8
4,957,198	-		PFLU_RS22025	0.12	-3.0
4,957,308	+		PFLU_RS22025	0.20	+1.2
4,957,308	+		PFLU_RS22025	0.20	-2.1
4,957,308	+		PFLU_RS22025	0.20	-1.2
4,957,308	+		PFLU_RS22025	0.20	-1.4
4,957,308	+		PFLU_RS22025	0.20	-1.7
4,957,308	+		PFLU_RS22025	0.20	-1.0
4,957,308	+		PFLU_RS22025	0.20	-0.5
4,957,308	+		PFLU_RS22025	0.20	-0.3
4,957,308	+		PFLU_RS22025	0.20	-0.6
4,957,308	+		PFLU_RS22025	0.20	-1.5
4,957,308	+		PFLU_RS22025	0.20	-2.5
4,957,308	+		PFLU_RS22025	0.20	-2.0
4,957,308	+		PFLU_RS22025	0.20	-3.0
4,957,308	+		PFLU_RS22025	0.20	-1.7
4,957,308	+		PFLU_RS22025	0.20	-0.6
4,957,308	+		PFLU_RS22025	0.20	-1.8
4,957,308	+		PFLU_RS22025	0.20	+0.8
4,957,308	+		PFLU_RS22025	0.20	-0.4
4,957,308	+		PFLU_RS22025	0.20	-2.3
4,957,309	-		PFLU_RS22025	0.20	+1.6
4,957,309	-		PFLU_RS22025	0.20	-1.5
4,957,309	-		PFLU_RS22025	0.20	-0.9
4,957,309	-		PFLU_RS22025	0.20	-0.7
4,957,309	-		PFLU_RS22025	0.20	-0.4
4,957,309	-		PFLU_RS22025	0.20	-2.2
4,957,309	-		PFLU_RS22025	0.20	+0.9
4,957,309	-		PFLU_RS22025	0.20	-1.7
4,957,309	-		PFLU_RS22025	0.20	-3.2
4,957,309	-		PFLU_RS22025	0.20	+0.9
4,957,309	-		PFLU_RS22025	0.20	+0.5
4,957,312	+		PFLU_RS22025	0.20	-1.8
4,957,312	+		PFLU_RS22025	0.20	-0.4
4,957,312	+		PFLU_RS22025	0.20	-0.4
4,957,312	+		PFLU_RS22025	0.20	-1.2
4,957,312	+		PFLU_RS22025	0.20	+0.0
4,957,312	+		PFLU_RS22025	0.20	-3.3
4,957,312	+		PFLU_RS22025	0.20	-1.0
4,957,312	+		PFLU_RS22025	0.20	-2.0
4,957,312	+		PFLU_RS22025	0.20	+0.4
4,957,313	-		PFLU_RS22025	0.20	-2.1
4,957,313	-		PFLU_RS22025	0.20	-2.6
4,957,313	-		PFLU_RS22025	0.20	-2.7
4,957,313	-		PFLU_RS22025	0.20	-1.7
4,957,313	-		PFLU_RS22025	0.20	-2.5
4,957,313	-		PFLU_RS22025	0.20	-1.2
4,957,455	+		PFLU_RS22025	0.30	-1.1
4,957,455	+		PFLU_RS22025	0.30	-0.7
4,957,455	+		PFLU_RS22025	0.30	-1.2
4,957,455	+		PFLU_RS22025	0.30	-0.4
4,957,455	+		PFLU_RS22025	0.30	-3.0
4,957,532	-		PFLU_RS22025	0.36	-0.8
4,957,532	-		PFLU_RS22025	0.36	-1.1
4,957,581	+		PFLU_RS22025	0.39	-0.4
4,957,582	-		PFLU_RS22025	0.39	-0.4
4,957,582	-		PFLU_RS22025	0.39	-0.1
4,957,656	-		PFLU_RS22025	0.45	-3.3
4,957,656	-		PFLU_RS22025	0.45	-1.1
4,957,677	+		PFLU_RS22025	0.46	-2.9
4,957,677	+		PFLU_RS22025	0.46	-2.0
4,957,678	-		PFLU_RS22025	0.46	-1.5
4,957,678	-		PFLU_RS22025	0.46	-1.5
4,957,678	-		PFLU_RS22025	0.46	-1.4
4,957,678	-		PFLU_RS22025	0.46	-2.9
4,957,681	+		PFLU_RS22025	0.46	-3.7
4,957,681	+		PFLU_RS22025	0.46	-1.5
4,957,681	+		PFLU_RS22025	0.46	-0.5
4,957,682	-		PFLU_RS22025	0.46	-1.0
4,957,682	-		PFLU_RS22025	0.46	-2.4
4,957,682	-		PFLU_RS22025	0.46	-1.4
4,958,134	+		PFLU_RS22025	0.79	-2.5
4,958,134	+		PFLU_RS22025	0.79	-0.6
4,958,135	-		PFLU_RS22025	0.79	-2.4
4,958,247	+		PFLU_RS22025	0.87	+0.8
4,958,248	-		PFLU_RS22025	0.87	+0.0
4,958,248	-		PFLU_RS22025	0.87	-2.3
4,958,248	-		PFLU_RS22025	0.87	-2.8
4,958,248	-		PFLU_RS22025	0.87	-3.5
4,958,248	-		PFLU_RS22025	0.87	-0.5
4,958,929	+		PFLU_RS22030	0.81	+3.4
4,959,219	+				+1.8
4,959,219	+				-1.5
4,959,251	+				-1.4
4,959,252	-				+0.4
4,959,292	+				+0.2
4,959,292	+				+0.7
4,959,292	+				+1.2
4,959,293	-				+0.8
4,959,293	-				-1.8
4,959,293	-				-0.4
4,959,293	-				-0.6
4,959,401	+				+1.3
4,959,401	+				-1.2