Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20615

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
4,645,718	+				-1.2
4,645,718	+				+0.4
4,645,722	+				+0.9
4,645,722	+				-1.7
4,645,723	-				-0.6
4,645,723	-				+0.6
4,645,723	-				+0.9
4,645,723	-				-0.3
4,645,723	-				+0.8
4,645,742	-		PFLU_RS20610	0.12	-2.0
4,645,923	+		PFLU_RS20610	0.30	+0.9
4,645,923	+		PFLU_RS20610	0.30	+0.9
4,645,923	+		PFLU_RS20610	0.30	+0.4
4,645,923	+		PFLU_RS20610	0.30	+2.1
4,645,923	+		PFLU_RS20610	0.30	+0.4
4,645,923	+		PFLU_RS20610	0.30	+0.7
4,645,923	+		PFLU_RS20610	0.30	-1.6
4,645,923	+		PFLU_RS20610	0.30	+0.6
4,645,924	-		PFLU_RS20610	0.30	+0.1
4,645,924	-		PFLU_RS20610	0.30	-1.3
4,645,924	-		PFLU_RS20610	0.30	+1.7
4,645,924	-		PFLU_RS20610	0.30	+0.6
4,645,924	-		PFLU_RS20610	0.30	-0.5
4,645,924	-		PFLU_RS20610	0.30	+1.5
4,645,924	-		PFLU_RS20610	0.30	+0.7
4,646,000	+		PFLU_RS20610	0.38	+0.4
4,646,077	+		PFLU_RS20610	0.46	-1.9
4,646,077	+		PFLU_RS20610	0.46	-1.1
4,646,078	-		PFLU_RS20610	0.46	+0.8
4,646,078	-		PFLU_RS20610	0.46	+1.5
4,646,078	-		PFLU_RS20610	0.46	+1.0
4,646,111	+		PFLU_RS20610	0.50	+0.5
4,646,111	+		PFLU_RS20610	0.50	+1.5
4,646,111	+		PFLU_RS20610	0.50	-0.4
4,646,111	+		PFLU_RS20610	0.50	+1.0
4,646,111	+		PFLU_RS20610	0.50	-0.7
4,646,111	+		PFLU_RS20610	0.50	+0.2
4,646,111	+		PFLU_RS20610	0.50	+1.2
4,646,111	+		PFLU_RS20610	0.50	+1.3
4,646,111	+		PFLU_RS20610	0.50	+0.3
4,646,111	+		PFLU_RS20610	0.50	+0.8
4,646,111	+		PFLU_RS20610	0.50	+0.7
4,646,111	+		PFLU_RS20610	0.50	+0.6
4,646,111	+		PFLU_RS20610	0.50	-0.4
4,646,111	+		PFLU_RS20610	0.50	+1.3
4,646,111	+		PFLU_RS20610	0.50	-1.6
4,646,111	+		PFLU_RS20610	0.50	-1.6
4,646,111	+		PFLU_RS20610	0.50	+0.5
4,646,111	+		PFLU_RS20610	0.50	+1.5
4,646,111	+		PFLU_RS20610	0.50	-0.7
4,646,111	+		PFLU_RS20610	0.50	-0.6
4,646,111	+		PFLU_RS20610	0.50	+1.3
4,646,111	+		PFLU_RS20610	0.50	+0.0
4,646,111	+		PFLU_RS20610	0.50	+0.3
4,646,112	-		PFLU_RS20610	0.50	-0.8
4,646,112	-		PFLU_RS20610	0.50	-0.4
4,646,112	-		PFLU_RS20610	0.50	+1.2
4,646,112	-		PFLU_RS20610	0.50	-0.1
4,646,112	-		PFLU_RS20610	0.50	+0.2
4,646,112	-		PFLU_RS20610	0.50	-0.1
4,646,112	-		PFLU_RS20610	0.50	-0.5
4,646,112	-		PFLU_RS20610	0.50	+0.3
4,646,112	-		PFLU_RS20610	0.50	-0.6
4,646,112	-		PFLU_RS20610	0.50	+0.6
4,646,112	-		PFLU_RS20610	0.50	-0.2
4,646,112	-		PFLU_RS20610	0.50	+1.1
4,646,112	-		PFLU_RS20610	0.50	+1.8
4,646,112	-		PFLU_RS20610	0.50	-2.3
4,646,112	-		PFLU_RS20610	0.50	+1.1
4,646,112	-		PFLU_RS20610	0.50	-1.0
4,646,202	+		PFLU_RS20610	0.59	+1.3
4,646,202	+		PFLU_RS20610	0.59	-2.8
4,646,247	-		PFLU_RS20610	0.63	-0.6
4,646,247	-		PFLU_RS20610	0.63	+0.6
4,646,470	+		PFLU_RS20610	0.86	-0.4
4,646,471	-		PFLU_RS20610	0.86	-0.4
4,646,471	-		PFLU_RS20610	0.86	+1.0
4,646,471	-		PFLU_RS20610	0.86	+0.3
4,646,471	-		PFLU_RS20610	0.86	+0.4
4,646,637	-				+0.7
4,646,773	+		PFLU_RS20615	0.26	-1.3
4,646,889	-		PFLU_RS20615	0.53	-0.4
4,647,002	+		PFLU_RS20615	0.79	+1.0
4,647,002	+		PFLU_RS20615	0.79	-0.6
4,647,002	+		PFLU_RS20615	0.79	-0.8
4,647,002	+		PFLU_RS20615	0.79	+0.6
4,647,002	+		PFLU_RS20615	0.79	+1.1
4,647,002	+		PFLU_RS20615	0.79	+0.6
4,647,002	+		PFLU_RS20615	0.79	-0.6
4,647,002	+		PFLU_RS20615	0.79	+1.2
4,647,002	+		PFLU_RS20615	0.79	-0.6
4,647,002	+		PFLU_RS20615	0.79	+0.6
4,647,002	+		PFLU_RS20615	0.79	-0.4
4,647,002	+		PFLU_RS20615	0.79	-1.3
4,647,003	-		PFLU_RS20615	0.79	+1.6
4,647,003	-		PFLU_RS20615	0.79	-1.0
4,647,003	-		PFLU_RS20615	0.79	+1.0
4,647,003	-		PFLU_RS20615	0.79	-0.7
4,647,003	-		PFLU_RS20615	0.79	-0.3
4,647,003	-		PFLU_RS20615	0.79	+1.4
4,647,066	+				+0.0
4,647,066	+				+0.2
4,647,067	-				-1.8
4,647,112	+				-0.4
4,647,113	-				-1.2
4,647,113	-				-0.1
4,647,113	-				+1.1
4,647,132	+				-0.5
4,647,132	+				+1.4
4,647,132	+				+0.5
4,647,132	+				-0.3
4,647,132	+				+2.2
4,647,132	+				+0.4
4,647,132	+				-0.4
4,647,132	+				-0.8
4,647,133	-				-0.4
4,647,133	-				-0.4
4,647,133	-				+0.5
4,647,156	-				+0.7
4,647,304	+		PFLU_RS20620	0.20	-0.2
4,647,305	-		PFLU_RS20620	0.21	+0.9
4,647,337	+		PFLU_RS20620	0.24	-1.2
4,647,337	+		PFLU_RS20620	0.24	+0.8
4,647,337	+		PFLU_RS20620	0.24	-0.7
4,647,338	-		PFLU_RS20620	0.24	+0.3
4,647,338	-		PFLU_RS20620	0.24	+0.7
4,647,349	-		PFLU_RS20620	0.26	-1.7
4,647,406	+		PFLU_RS20620	0.33	+0.7
4,647,406	+		PFLU_RS20620	0.33	-0.4
4,647,406	+		PFLU_RS20620	0.33	+0.9
4,647,406	+		PFLU_RS20620	0.33	-0.7
4,647,407	-		PFLU_RS20620	0.33	+0.5
4,647,407	-		PFLU_RS20620	0.33	-0.8
4,647,490	+		PFLU_RS20620	0.43	+0.7
4,647,490	+		PFLU_RS20620	0.43	+0.4
4,647,491	-		PFLU_RS20620	0.43	+0.9
4,647,491	-		PFLU_RS20620	0.43	-2.1
4,647,491	-		PFLU_RS20620	0.43	-1.0
4,647,602	+		PFLU_RS20620	0.56	+1.1
4,647,602	+		PFLU_RS20620	0.56	-0.7
4,647,602	+		PFLU_RS20620	0.56	+0.0
4,647,602	+		PFLU_RS20620	0.56	+2.1
4,647,602	+		PFLU_RS20620	0.56	+1.0
4,647,602	+		PFLU_RS20620	0.56	+0.4
4,647,602	+		PFLU_RS20620	0.56	-1.7
4,647,602	+		PFLU_RS20620	0.56	-0.7
4,647,602	+		PFLU_RS20620	0.56	+0.2
4,647,603	-		PFLU_RS20620	0.56	+0.9
4,647,603	-		PFLU_RS20620	0.56	+1.8
4,647,983	+				+0.0
4,647,983	+				+0.2