Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19105

Experiment: NAG (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19100 and PFLU_RS19105 overlap by 4 nucleotidesPFLU_RS19105 and PFLU_RS19110 are separated by 333 nucleotides PFLU_RS19100: PFLU_RS19100 - carbon-nitrogen hydrolase family protein, at 4,319,140 to 4,320,270 _RS19100 PFLU_RS19105: PFLU_RS19105 - AraC family transcriptional regulator, at 4,320,267 to 4,321,295 _RS19105 PFLU_RS19110: PFLU_RS19110 - hypothetical protein, at 4,321,629 to 4,322,633 _RS19110 Position (kb) 4320 4321 4322Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4319.333 kb on - strand, within PFLU_RS19100at 4319.371 kb on + strand, within PFLU_RS19100at 4319.436 kb on + strand, within PFLU_RS19100at 4319.437 kb on - strand, within PFLU_RS19100at 4319.590 kb on + strand, within PFLU_RS19100at 4319.626 kb on + strand, within PFLU_RS19100at 4319.627 kb on - strand, within PFLU_RS19100at 4319.746 kb on + strand, within PFLU_RS19100at 4319.747 kb on - strand, within PFLU_RS19100at 4319.818 kb on + strand, within PFLU_RS19100at 4319.819 kb on - strand, within PFLU_RS19100at 4319.933 kb on - strand, within PFLU_RS19100at 4319.998 kb on - strand, within PFLU_RS19100at 4319.998 kb on - strand, within PFLU_RS19100at 4320.258 kb on + strandat 4320.369 kb on + strandat 4320.426 kb on + strand, within PFLU_RS19105at 4320.426 kb on + strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.594 kb on + strand, within PFLU_RS19105at 4320.594 kb on + strand, within PFLU_RS19105at 4320.595 kb on - strand, within PFLU_RS19105at 4320.595 kb on - strand, within PFLU_RS19105at 4320.660 kb on + strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.684 kb on + strand, within PFLU_RS19105at 4320.685 kb on - strand, within PFLU_RS19105at 4320.799 kb on - strand, within PFLU_RS19105at 4320.799 kb on - strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.925 kb on + strand, within PFLU_RS19105at 4320.925 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.192 kb on - strand, within PFLU_RS19105at 4321.192 kb on - strand, within PFLU_RS19105at 4321.192 kb on - strand, within PFLU_RS19105at 4321.305 kb on + strandat 4321.305 kb on + strandat 4321.305 kb on + strandat 4321.305 kb on + strandat 4321.305 kb on + strandat 4321.306 kb on - strandat 4321.381 kb on - strandat 4321.381 kb on - strandat 4321.428 kb on - strandat 4321.448 kb on + strandat 4321.448 kb on + strandat 4321.449 kb on - strandat 4321.449 kb on - strandat 4321.449 kb on - strandat 4321.449 kb on - strandat 4321.505 kb on + strandat 4321.505 kb on + strandat 4321.511 kb on + strandat 4321.512 kb on - strandat 4321.512 kb on - strandat 4321.530 kb on + strandat 4321.530 kb on + strandat 4321.530 kb on + strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.531 kb on - strandat 4321.552 kb on + strandat 4321.553 kb on - strandat 4321.598 kb on + strandat 4321.646 kb on - strandat 4321.664 kb on + strandat 4321.710 kb on + strandat 4321.710 kb on + strandat 4321.711 kb on - strandat 4321.711 kb on - strandat 4321.824 kb on - strand, within PFLU_RS19110at 4321.845 kb on + strand, within PFLU_RS19110at 4322.010 kb on + strand, within PFLU_RS19110at 4322.010 kb on + strand, within PFLU_RS19110at 4322.010 kb on + strand, within PFLU_RS19110at 4322.010 kb on + strand, within PFLU_RS19110at 4322.010 kb on + strand, within PFLU_RS19110at 4322.010 kb on + strand, within PFLU_RS19110at 4322.011 kb on - strand, within PFLU_RS19110at 4322.063 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.070 kb on + strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.071 kb on - strand, within PFLU_RS19110at 4322.094 kb on + strand, within PFLU_RS19110at 4322.094 kb on + strand, within PFLU_RS19110at 4322.095 kb on - strand, within PFLU_RS19110at 4322.095 kb on - strand, within PFLU_RS19110at 4322.097 kb on + strand, within PFLU_RS19110at 4322.097 kb on + strand, within PFLU_RS19110at 4322.098 kb on - strand, within PFLU_RS19110at 4322.123 kb on + strand, within PFLU_RS19110at 4322.123 kb on + strand, within PFLU_RS19110at 4322.123 kb on + strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.124 kb on - strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.168 kb on + strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.169 kb on - strand, within PFLU_RS19110at 4322.172 kb on + strand, within PFLU_RS19110at 4322.172 kb on + strand, within PFLU_RS19110at 4322.172 kb on + strand, within PFLU_RS19110at 4322.172 kb on + strand, within PFLU_RS19110at 4322.173 kb on - strand, within PFLU_RS19110at 4322.173 kb on - strand, within PFLU_RS19110at 4322.173 kb on - strand, within PFLU_RS19110

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C); with MOPS
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4,319,333 - PFLU_RS19100 0.17 +1.2
4,319,371 + PFLU_RS19100 0.20 -0.4
4,319,436 + PFLU_RS19100 0.26 +1.3
4,319,437 - PFLU_RS19100 0.26 +0.3
4,319,590 + PFLU_RS19100 0.40 +1.1
4,319,626 + PFLU_RS19100 0.43 +0.6
4,319,627 - PFLU_RS19100 0.43 -0.1
4,319,746 + PFLU_RS19100 0.54 +1.0
4,319,747 - PFLU_RS19100 0.54 -0.8
4,319,818 + PFLU_RS19100 0.60 +0.8
4,319,819 - PFLU_RS19100 0.60 +1.8
4,319,933 - PFLU_RS19100 0.70 +1.3
4,319,998 - PFLU_RS19100 0.76 -0.3
4,319,998 - PFLU_RS19100 0.76 -1.1
4,320,258 + +0.5
4,320,369 + +1.4
4,320,426 + PFLU_RS19105 0.15 -1.5
4,320,426 + PFLU_RS19105 0.15 +1.6
4,320,427 - PFLU_RS19105 0.16 -0.2
4,320,427 - PFLU_RS19105 0.16 +0.3
4,320,427 - PFLU_RS19105 0.16 -1.1
4,320,427 - PFLU_RS19105 0.16 -2.6
4,320,427 - PFLU_RS19105 0.16 -1.4
4,320,594 + PFLU_RS19105 0.32 -1.5
4,320,594 + PFLU_RS19105 0.32 -1.1
4,320,595 - PFLU_RS19105 0.32 -0.4
4,320,595 - PFLU_RS19105 0.32 +0.3
4,320,660 + PFLU_RS19105 0.38 +0.4
4,320,661 - PFLU_RS19105 0.38 +0.7
4,320,661 - PFLU_RS19105 0.38 +0.2
4,320,661 - PFLU_RS19105 0.38 +0.0
4,320,661 - PFLU_RS19105 0.38 -0.5
4,320,675 + PFLU_RS19105 0.40 -2.4
4,320,675 + PFLU_RS19105 0.40 -1.1
4,320,675 + PFLU_RS19105 0.40 +0.3
4,320,675 + PFLU_RS19105 0.40 -0.8
4,320,676 - PFLU_RS19105 0.40 +0.6
4,320,676 - PFLU_RS19105 0.40 +1.0
4,320,676 - PFLU_RS19105 0.40 -1.4
4,320,676 - PFLU_RS19105 0.40 -0.8
4,320,684 + PFLU_RS19105 0.41 +0.3
4,320,685 - PFLU_RS19105 0.41 +0.6
4,320,799 - PFLU_RS19105 0.52 +1.1
4,320,799 - PFLU_RS19105 0.52 -0.5
4,320,810 + PFLU_RS19105 0.53 +0.3
4,320,810 + PFLU_RS19105 0.53 +1.0
4,320,810 + PFLU_RS19105 0.53 -1.6
4,320,810 + PFLU_RS19105 0.53 -1.7
4,320,811 - PFLU_RS19105 0.53 +1.3
4,320,811 - PFLU_RS19105 0.53 -1.0
4,320,811 - PFLU_RS19105 0.53 -1.0
4,320,811 - PFLU_RS19105 0.53 +1.3
4,320,811 - PFLU_RS19105 0.53 -0.4
4,320,811 - PFLU_RS19105 0.53 -0.1
4,320,811 - PFLU_RS19105 0.53 -0.2
4,320,811 - PFLU_RS19105 0.53 +0.5
4,320,925 + PFLU_RS19105 0.64 -0.5
4,320,925 + PFLU_RS19105 0.64 -0.8
4,321,152 + PFLU_RS19105 0.86 +0.6
4,321,152 + PFLU_RS19105 0.86 -0.4
4,321,152 + PFLU_RS19105 0.86 +0.5
4,321,152 + PFLU_RS19105 0.86 -0.6
4,321,152 + PFLU_RS19105 0.86 +1.1
4,321,152 + PFLU_RS19105 0.86 +1.2
4,321,153 - PFLU_RS19105 0.86 +1.2
4,321,153 - PFLU_RS19105 0.86 -0.1
4,321,153 - PFLU_RS19105 0.86 -1.1
4,321,153 - PFLU_RS19105 0.86 +0.0
4,321,153 - PFLU_RS19105 0.86 -1.1
4,321,153 - PFLU_RS19105 0.86 +0.4
4,321,153 - PFLU_RS19105 0.86 -0.4
4,321,192 - PFLU_RS19105 0.90 -1.4
4,321,192 - PFLU_RS19105 0.90 +0.2
4,321,192 - PFLU_RS19105 0.90 +0.2
4,321,305 + +0.9
4,321,305 + -2.9
4,321,305 + +1.0
4,321,305 + -2.0
4,321,305 + -0.1
4,321,306 - +0.4
4,321,381 - +0.2
4,321,381 - +0.6
4,321,428 - -0.6
4,321,448 + +1.3
4,321,448 + +0.9
4,321,449 - +0.9
4,321,449 - -1.8
4,321,449 - +0.9
4,321,449 - +0.6
4,321,505 + -0.4
4,321,505 + +1.4
4,321,511 + +0.3
4,321,512 - -1.1
4,321,512 - -0.0
4,321,530 + +1.3
4,321,530 + -0.0
4,321,530 + +2.4
4,321,531 - +1.7
4,321,531 - -1.7
4,321,531 - -1.8
4,321,531 - +0.8
4,321,531 - -1.5
4,321,531 - +0.4
4,321,531 - -0.5
4,321,531 - +1.1
4,321,531 - +1.4
4,321,552 + -0.5
4,321,553 - +0.7
4,321,598 + +0.2
4,321,646 - +1.9
4,321,664 + -0.2
4,321,710 + -0.8
4,321,710 + +0.8
4,321,711 - +0.3
4,321,711 - -2.4
4,321,824 - PFLU_RS19110 0.19 -2.0
4,321,845 + PFLU_RS19110 0.21 +1.0
4,322,010 + PFLU_RS19110 0.38 +0.7
4,322,010 + PFLU_RS19110 0.38 -2.0
4,322,010 + PFLU_RS19110 0.38 +0.0
4,322,010 + PFLU_RS19110 0.38 +0.4
4,322,010 + PFLU_RS19110 0.38 +0.2
4,322,010 + PFLU_RS19110 0.38 -0.0
4,322,011 - PFLU_RS19110 0.38 +2.2
4,322,063 + PFLU_RS19110 0.43 -0.5
4,322,070 + PFLU_RS19110 0.44 -0.2
4,322,070 + PFLU_RS19110 0.44 +0.3
4,322,070 + PFLU_RS19110 0.44 -0.3
4,322,070 + PFLU_RS19110 0.44 +1.7
4,322,070 + PFLU_RS19110 0.44 +1.7
4,322,070 + PFLU_RS19110 0.44 +1.2
4,322,070 + PFLU_RS19110 0.44 -0.5
4,322,070 + PFLU_RS19110 0.44 +1.3
4,322,071 - PFLU_RS19110 0.44 -1.0
4,322,071 - PFLU_RS19110 0.44 +0.1
4,322,071 - PFLU_RS19110 0.44 +1.2
4,322,071 - PFLU_RS19110 0.44 +0.0
4,322,071 - PFLU_RS19110 0.44 +0.7
4,322,071 - PFLU_RS19110 0.44 -0.1
4,322,071 - PFLU_RS19110 0.44 -1.4
4,322,071 - PFLU_RS19110 0.44 -3.0
4,322,071 - PFLU_RS19110 0.44 -1.0
4,322,094 + PFLU_RS19110 0.46 +1.9
4,322,094 + PFLU_RS19110 0.46 +1.0
4,322,095 - PFLU_RS19110 0.46 +1.8
4,322,095 - PFLU_RS19110 0.46 +2.4
4,322,097 + PFLU_RS19110 0.47 -0.3
4,322,097 + PFLU_RS19110 0.47 -0.4
4,322,098 - PFLU_RS19110 0.47 -0.2
4,322,123 + PFLU_RS19110 0.49 -0.9
4,322,123 + PFLU_RS19110 0.49 -0.6
4,322,123 + PFLU_RS19110 0.49 +0.2
4,322,124 - PFLU_RS19110 0.49 +2.0
4,322,124 - PFLU_RS19110 0.49 +1.2
4,322,124 - PFLU_RS19110 0.49 -0.7
4,322,124 - PFLU_RS19110 0.49 +0.7
4,322,124 - PFLU_RS19110 0.49 +0.8
4,322,124 - PFLU_RS19110 0.49 -1.2
4,322,124 - PFLU_RS19110 0.49 +0.8
4,322,124 - PFLU_RS19110 0.49 -1.4
4,322,168 + PFLU_RS19110 0.54 +0.1
4,322,168 + PFLU_RS19110 0.54 -0.2
4,322,168 + PFLU_RS19110 0.54 +0.3
4,322,168 + PFLU_RS19110 0.54 -0.1
4,322,168 + PFLU_RS19110 0.54 -1.8
4,322,168 + PFLU_RS19110 0.54 -1.2
4,322,168 + PFLU_RS19110 0.54 +0.4
4,322,168 + PFLU_RS19110 0.54 -1.7
4,322,168 + PFLU_RS19110 0.54 +0.3
4,322,169 - PFLU_RS19110 0.54 -0.4
4,322,169 - PFLU_RS19110 0.54 -0.0
4,322,169 - PFLU_RS19110 0.54 +1.5
4,322,169 - PFLU_RS19110 0.54 +0.0
4,322,169 - PFLU_RS19110 0.54 +0.5
4,322,169 - PFLU_RS19110 0.54 +0.7
4,322,169 - PFLU_RS19110 0.54 -0.7
4,322,169 - PFLU_RS19110 0.54 +0.9
4,322,169 - PFLU_RS19110 0.54 -0.3
4,322,172 + PFLU_RS19110 0.54 -1.0
4,322,172 + PFLU_RS19110 0.54 +0.6
4,322,172 + PFLU_RS19110 0.54 -1.1
4,322,172 + PFLU_RS19110 0.54 -2.0
4,322,173 - PFLU_RS19110 0.54 +0.7
4,322,173 - PFLU_RS19110 0.54 -0.2
4,322,173 - PFLU_RS19110 0.54 +2.2

Or see this region's nucleotide sequence