Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16645

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
3,773,589	-		PFLU_RS16640	0.39	-1.6
3,773,726	+		PFLU_RS16640	0.49	+1.2
3,773,726	+		PFLU_RS16640	0.49	-0.8
3,773,726	+		PFLU_RS16640	0.49	+1.1
3,773,727	-		PFLU_RS16640	0.49	-0.8
3,773,814	-		PFLU_RS16640	0.55	+1.0
3,773,814	-		PFLU_RS16640	0.55	-2.4
3,773,851	-		PFLU_RS16640	0.57	+0.9
3,773,873	+		PFLU_RS16640	0.59	+1.7
3,774,065	+		PFLU_RS16640	0.73	+0.9
3,774,065	+		PFLU_RS16640	0.73	+0.3
3,774,065	+		PFLU_RS16640	0.73	-0.0
3,774,066	-		PFLU_RS16640	0.73	-0.3
3,774,074	+		PFLU_RS16640	0.73	+1.5
3,774,080	+		PFLU_RS16640	0.74	+0.1
3,774,112	-		PFLU_RS16640	0.76	-0.6
3,774,158	+		PFLU_RS16640	0.79	+0.0
3,774,158	+		PFLU_RS16640	0.79	-1.4
3,774,159	-		PFLU_RS16640	0.79	+1.0
3,774,159	-		PFLU_RS16640	0.79	+1.1
3,774,159	-		PFLU_RS16640	0.79	+0.0
3,774,159	-		PFLU_RS16640	0.79	+1.0
3,774,159	-		PFLU_RS16640	0.79	+0.6
3,774,260	-		PFLU_RS16640	0.87	+2.0
3,774,483	+				+1.2
3,774,483	+				+0.1
3,774,484	-				+0.7
3,774,509	+				-0.4
3,774,509	+				-1.8
3,774,510	-				+0.1
3,774,510	-				+2.1
3,774,527	+				-2.4
3,774,541	+				+0.8
3,774,541	+				-2.6
3,774,541	+				-2.1
3,774,541	+				-0.5
3,774,541	+				+0.1
3,774,541	+				+0.0
3,774,542	-				-0.2
3,774,542	-				+0.0
3,774,542	-				+0.1
3,774,542	-				-0.2
3,774,542	-				-0.8
3,774,542	-				+0.3
3,774,542	-				+0.0
3,774,542	-				+0.6
3,774,542	-				-1.7
3,774,584	+				+1.2
3,774,584	+				-0.4
3,774,584	+				+0.5
3,774,585	-				+0.3
3,774,651	+		PFLU_RS16645	0.15	-0.4
3,774,652	-		PFLU_RS16645	0.16	+1.0
3,774,652	-		PFLU_RS16645	0.16	+1.5
3,774,670	+		PFLU_RS16645	0.19	+0.6
3,774,671	-		PFLU_RS16645	0.19	+1.3
3,774,761	+		PFLU_RS16645	0.38	-2.0
3,774,761	+		PFLU_RS16645	0.38	+0.2
3,774,761	+		PFLU_RS16645	0.38	-1.7
3,774,761	+		PFLU_RS16645	0.38	+1.0
3,774,761	+		PFLU_RS16645	0.38	+0.6
3,774,761	+		PFLU_RS16645	0.38	+0.4
3,774,761	+		PFLU_RS16645	0.38	+1.7
3,774,762	-		PFLU_RS16645	0.39	+1.0
3,774,762	-		PFLU_RS16645	0.39	+0.4
3,774,762	-		PFLU_RS16645	0.39	+2.0
3,774,787	-		PFLU_RS16645	0.44	+1.1
3,774,825	+		PFLU_RS16645	0.52	+2.6
3,774,826	-		PFLU_RS16645	0.52	-1.3
3,774,839	+		PFLU_RS16645	0.55	+0.2
3,774,840	-		PFLU_RS16645	0.55	-0.6
3,774,840	-		PFLU_RS16645	0.55	+0.1
3,774,840	-		PFLU_RS16645	0.55	-2.1
3,774,840	-		PFLU_RS16645	0.55	-0.3
3,774,928	+		PFLU_RS16645	0.73	+0.2
3,774,928	+		PFLU_RS16645	0.73	+2.0
3,774,928	+		PFLU_RS16645	0.73	-2.8
3,774,929	-		PFLU_RS16645	0.74	+0.3
3,774,929	-		PFLU_RS16645	0.74	+1.3
3,774,969	-		PFLU_RS16645	0.82	-0.3
3,775,016	+				-1.7
3,775,016	+				-2.0
3,775,016	+				+0.2
3,775,016	+				+0.8
3,775,016	+				+1.0
3,775,016	+				-2.8
3,775,016	+				-2.1
3,775,016	+				+0.2
3,775,016	+				+1.2
3,775,016	+				+0.6
3,775,017	-				+1.4
3,775,017	-				+1.3
3,775,017	-				+1.0
3,775,017	-				-1.8
3,775,017	-				+0.2
3,775,017	-				-1.6
3,775,017	-				+0.3
3,775,017	-				-2.3
3,775,017	-				-1.8
3,775,017	-				+0.4
3,775,017	-				+0.6
3,775,017	-				-0.0
3,775,017	-				+0.2
3,775,019	+				+0.2
3,775,019	+				+0.7
3,775,020	-				+1.1
3,775,020	-				-0.7
3,775,020	-				+0.7
3,775,020	-				-0.9
3,775,020	-				+0.4
3,775,020	-				+1.4
3,775,098	+				+0.2
3,775,098	+				-2.0
3,775,098	+				+0.3
3,775,098	+				-1.1
3,775,098	+				+1.5
3,775,098	+				-1.0
3,775,098	+				+0.8
3,775,098	+				-1.3
3,775,098	+				-0.6
3,775,098	+				-2.0
3,775,098	+				-3.4
3,775,098	+				+0.5
3,775,098	+				-1.6
3,775,098	+				-0.6
3,775,099	-				-2.9
3,775,099	-				-0.1
3,775,099	-				-1.3
3,775,099	-				+2.1
3,775,099	-				+0.4
3,775,099	-				+0.0
3,775,099	-				-2.3
3,775,099	-				-1.3
3,775,099	-				-2.3
3,775,099	-				+0.9
3,775,099	-				-0.8
3,775,099	-				+1.0
3,775,099	-				+0.8
3,775,099	-				-0.1
3,775,099	-				+1.0
3,775,099	-				+1.3
3,775,099	-				-1.3
3,775,099	-				-1.6
3,775,099	-				+0.9
3,775,099	-				+0.5
3,775,099	-				+0.6
3,775,166	+				-0.8
3,775,192	+				+0.5
3,775,198	+				+1.2
3,775,198	+				+0.9
3,775,198	+				+0.1
3,775,198	+				-0.6
3,775,199	-				+0.4
3,775,199	-				-0.1
3,775,199	-				+1.0
3,775,199	-				-1.7
3,775,199	-				-0.3
3,775,199	-				-0.4
3,775,220	-				-1.0
3,775,220	-				-1.0
3,775,263	+				+0.4
3,775,264	-				-0.2
3,775,342	-				-0.1
3,775,487	-		PFLU_RS16650	0.19	-0.2
3,775,487	-		PFLU_RS16650	0.19	-0.9
3,775,487	-		PFLU_RS16650	0.19	+0.3
3,775,575	+		PFLU_RS16650	0.26	+0.9
3,775,575	+		PFLU_RS16650	0.26	+0.1
3,775,576	-		PFLU_RS16650	0.26	+1.4
3,775,576	-		PFLU_RS16650	0.26	-2.9
3,775,639	-		PFLU_RS16650	0.31	-1.2
3,775,678	-		PFLU_RS16650	0.34	+0.4
3,775,685	+		PFLU_RS16650	0.35	+0.2
3,775,685	+		PFLU_RS16650	0.35	+0.7
3,775,686	-		PFLU_RS16650	0.35	-0.3
3,775,707	+		PFLU_RS16650	0.36	-0.6
3,775,707	+		PFLU_RS16650	0.36	+0.9
3,775,707	+		PFLU_RS16650	0.36	+1.0
3,775,707	+		PFLU_RS16650	0.36	+0.5
3,775,707	+		PFLU_RS16650	0.36	+0.2
3,775,708	-		PFLU_RS16650	0.37	+0.3
3,775,708	-		PFLU_RS16650	0.37	-2.1
3,775,708	-		PFLU_RS16650	0.37	+1.0
3,775,708	-		PFLU_RS16650	0.37	+0.7
3,775,710	+		PFLU_RS16650	0.37	+0.7
3,775,711	-		PFLU_RS16650	0.37	+0.9
3,775,736	+		PFLU_RS16650	0.39	+0.8
3,775,736	+		PFLU_RS16650	0.39	+2.4
3,775,736	+		PFLU_RS16650	0.39	-1.2
3,775,736	+		PFLU_RS16650	0.39	+1.2
3,775,737	-		PFLU_RS16650	0.39	-1.3
3,775,737	-		PFLU_RS16650	0.39	+0.5
3,775,737	-		PFLU_RS16650	0.39	-0.5
3,775,809	-		PFLU_RS16650	0.44	+1.6
3,775,815	+		PFLU_RS16650	0.45	-1.3
3,775,816	-		PFLU_RS16650	0.45	+0.4
3,775,836	+		PFLU_RS16650	0.47	-0.8
3,775,907	+		PFLU_RS16650	0.52	-0.9
3,775,974	+		PFLU_RS16650	0.57	-0.2
3,775,974	+		PFLU_RS16650	0.57	-2.6
3,775,974	+		PFLU_RS16650	0.57	+0.3
3,775,974	+		PFLU_RS16650	0.57	+3.6
3,775,974	+		PFLU_RS16650	0.57	+0.6
3,775,974	+		PFLU_RS16650	0.57	+0.2
3,775,974	+		PFLU_RS16650	0.57	-2.1
3,775,974	+		PFLU_RS16650	0.57	-2.3
3,775,975	-		PFLU_RS16650	0.57	-0.4
3,775,975	-		PFLU_RS16650	0.57	+0.6
3,775,975	-		PFLU_RS16650	0.57	-0.6
3,775,975	-		PFLU_RS16650	0.57	+0.3
3,775,975	-		PFLU_RS16650	0.57	-0.2
3,776,046	+		PFLU_RS16650	0.63	-0.2