Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14745

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
3,297,280	+		PFLU_RS14740	0.50	-0.1
3,297,280	+		PFLU_RS14740	0.50	-0.6
3,297,281	-		PFLU_RS14740	0.50	+1.0
3,297,281	-		PFLU_RS14740	0.50	-0.6
3,297,281	-		PFLU_RS14740	0.50	+1.2
3,297,473	+		PFLU_RS14740	0.61	+0.9
3,297,619	+		PFLU_RS14740	0.70	+0.8
3,297,619	+		PFLU_RS14740	0.70	-1.9
3,297,620	-		PFLU_RS14740	0.70	-0.1
3,297,620	-		PFLU_RS14740	0.70	+0.1
3,297,711	+		PFLU_RS14740	0.76	+0.0
3,297,712	-		PFLU_RS14740	0.76	+0.3
3,297,712	-		PFLU_RS14740	0.76	+0.4
3,297,901	-		PFLU_RS14740	0.87	-1.1
3,297,901	-		PFLU_RS14740	0.87	+2.6
3,297,956	+				+1.0
3,297,956	+				+0.4
3,298,157	+				+1.6
3,298,157	+				+0.0
3,298,157	+				-1.4
3,298,157	+				-0.0
3,298,157	+				-2.0
3,298,157	+				-0.2
3,298,157	+				+0.9
3,298,157	+				-0.7
3,298,158	-				-0.7
3,298,158	-				+1.3
3,298,158	-				+1.4
3,298,158	-				-0.6
3,298,158	-				+1.2
3,298,158	-				-0.8
3,298,158	-				-0.1
3,298,158	-				+1.3
3,298,158	-				-1.6
3,298,158	-				+0.4
3,298,166	-				+0.3
3,298,192	-				-0.7
3,298,320	-		PFLU_RS14745	0.14	+0.0
3,298,349	+		PFLU_RS14745	0.16	+0.7
3,298,349	+		PFLU_RS14745	0.16	-0.9
3,298,349	+		PFLU_RS14745	0.16	-1.0
3,298,349	+		PFLU_RS14745	0.16	+1.1
3,298,349	+		PFLU_RS14745	0.16	+1.1
3,298,349	+		PFLU_RS14745	0.16	+0.3
3,298,349	+		PFLU_RS14745	0.16	+1.5
3,298,350	-		PFLU_RS14745	0.16	+1.3
3,298,350	-		PFLU_RS14745	0.16	+0.6
3,298,350	-		PFLU_RS14745	0.16	+1.0
3,298,350	-		PFLU_RS14745	0.16	+0.4
3,298,350	-		PFLU_RS14745	0.16	-1.4
3,298,350	-		PFLU_RS14745	0.16	+0.1
3,298,350	-		PFLU_RS14745	0.16	+0.5
3,298,350	-		PFLU_RS14745	0.16	+0.7
3,298,350	-		PFLU_RS14745	0.16	+1.1
3,298,350	-		PFLU_RS14745	0.16	+1.0
3,298,374	+		PFLU_RS14745	0.17	-0.7
3,298,374	+		PFLU_RS14745	0.17	+0.4
3,298,375	-		PFLU_RS14745	0.17	+0.5
3,298,407	+		PFLU_RS14745	0.19	+2.1
3,298,407	+		PFLU_RS14745	0.19	+0.9
3,298,408	-		PFLU_RS14745	0.20	+0.1
3,298,437	-		PFLU_RS14745	0.21	-1.1
3,298,455	+		PFLU_RS14745	0.23	-0.8
3,298,455	+		PFLU_RS14745	0.23	+0.0
3,298,455	+		PFLU_RS14745	0.23	+0.6
3,298,455	+		PFLU_RS14745	0.23	-0.7
3,298,455	+		PFLU_RS14745	0.23	-0.5
3,298,456	-		PFLU_RS14745	0.23	+0.8
3,298,698	+		PFLU_RS14745	0.39	+1.4
3,298,698	+		PFLU_RS14745	0.39	+0.3
3,298,974	-		PFLU_RS14745	0.57	+1.0
3,299,009	+		PFLU_RS14745	0.60	-0.3
3,299,010	-		PFLU_RS14745	0.60	+1.4
3,299,010	-		PFLU_RS14745	0.60	+1.3
3,299,010	-		PFLU_RS14745	0.60	+0.5
3,299,118	-		PFLU_RS14745	0.67	+0.6
3,299,129	+		PFLU_RS14745	0.68	-0.3
3,299,129	+		PFLU_RS14745	0.68	+0.3
3,299,129	+		PFLU_RS14745	0.68	-0.1
3,299,130	-		PFLU_RS14745	0.68	-0.2
3,299,130	-		PFLU_RS14745	0.68	-1.7
3,299,130	-		PFLU_RS14745	0.68	+1.3
3,299,288	+		PFLU_RS14745	0.78	-0.1
3,299,289	-		PFLU_RS14745	0.78	+1.4
3,299,289	-		PFLU_RS14745	0.78	+1.6
3,299,349	+		PFLU_RS14745	0.82	+2.3
3,299,349	+		PFLU_RS14745	0.82	+0.9
3,299,349	+		PFLU_RS14745	0.82	+0.9
3,299,350	-		PFLU_RS14745	0.82	-2.8
3,299,350	-		PFLU_RS14745	0.82	+0.0
3,299,429	+		PFLU_RS14745	0.87	-2.4
3,299,429	+		PFLU_RS14745	0.87	-0.1
3,299,429	+		PFLU_RS14745	0.87	+0.9
3,299,429	+		PFLU_RS14745	0.87	+2.5
3,299,429	+		PFLU_RS14745	0.87	+0.6
3,299,429	+		PFLU_RS14745	0.87	+0.9
3,299,429	+		PFLU_RS14745	0.87	+0.5
3,299,429	+		PFLU_RS14745	0.87	-1.4
3,299,430	-		PFLU_RS14745	0.88	+1.3
3,299,430	-		PFLU_RS14745	0.88	+1.0
3,299,430	-		PFLU_RS14745	0.88	-0.2
3,299,430	-		PFLU_RS14745	0.88	+0.4
3,299,430	-		PFLU_RS14745	0.88	-0.2
3,299,430	-		PFLU_RS14745	0.88	-0.0
3,299,430	-		PFLU_RS14745	0.88	+2.3
3,299,491	-				-0.1
3,299,491	-				+0.8
3,299,594	-				-1.4
3,299,610	+				+0.6
3,299,610	+				-0.0
3,299,611	-				-0.7
3,299,636	+				-1.7
3,299,636	+				+0.3
3,299,636	+				-1.1
3,299,636	+				-0.4
3,299,636	+				-1.4
3,299,636	+				+0.9
3,299,636	+				-0.2
3,299,636	+				+0.8
3,299,637	-				-0.2
3,299,637	-				-0.7
3,299,637	-				+0.6
3,299,637	-				+1.9
3,299,637	-				+0.4
3,299,637	-				+0.4
3,299,637	-				+0.2
3,299,672	+				+0.0
3,299,673	-				-0.7
3,299,686	+				+1.9
3,299,687	-				+1.2
3,299,687	-				-0.5
3,299,762	+				+0.7
3,299,762	+				+1.2
3,299,762	+				-0.5
3,299,762	+				-3.2
3,299,762	+				+0.9
3,299,762	+				+1.0
3,299,762	+				-0.2
3,299,763	-				-0.4
3,299,763	-				-1.9
3,299,763	-				-0.9
3,299,763	-				-0.4
3,299,763	-				+1.5
3,299,763	-				+0.4
3,299,763	-				+0.2
3,299,763	-				+0.4
3,299,763	-				-1.1
3,299,764	+				-1.7
3,299,764	+				-0.8
3,299,764	+				-0.7
3,299,764	+				-0.1
3,299,764	+				+0.2
3,299,764	+				-1.8
3,299,764	+				-0.1
3,299,764	+				-0.7
3,299,765	-				-0.6
3,299,765	-				+0.3
3,299,765	-				+0.6
3,299,858	+				-1.5
3,299,858	+				+0.6
3,299,859	-				+0.6
3,299,859	-				-0.7
3,300,263	+		PFLU_RS14750	0.47	+0.5
3,300,263	+		PFLU_RS14750	0.47	-0.9
3,300,264	-		PFLU_RS14750	0.47	-1.4
3,300,264	-		PFLU_RS14750	0.47	-2.9
3,300,264	-		PFLU_RS14750	0.47	-1.0
3,300,264	-		PFLU_RS14750	0.47	-0.1
3,300,264	-		PFLU_RS14750	0.47	+1.3
3,300,360	-		PFLU_RS14750	0.57	-0.0
3,300,360	-		PFLU_RS14750	0.57	-0.7
3,300,415	+		PFLU_RS14750	0.62	-0.4
3,300,416	-		PFLU_RS14750	0.62	-2.1
3,300,489	+		PFLU_RS14750	0.69	-2.9
3,300,489	+		PFLU_RS14750	0.69	+0.2
3,300,489	+		PFLU_RS14750	0.69	+0.4
3,300,489	+		PFLU_RS14750	0.69	+1.9
3,300,490	-		PFLU_RS14750	0.69	-0.3
3,300,490	-		PFLU_RS14750	0.69	-1.4
3,300,490	-		PFLU_RS14750	0.69	+0.1
3,300,490	-		PFLU_RS14750	0.69	-1.7
3,300,511	+		PFLU_RS14750	0.71	-0.3
3,300,511	+		PFLU_RS14750	0.71	-0.9
3,300,512	-		PFLU_RS14750	0.71	-0.2
3,300,512	-		PFLU_RS14750	0.71	-1.7
3,300,572	+		PFLU_RS14750	0.77	-1.4
3,300,572	+		PFLU_RS14750	0.77	+0.0