Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10815

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,381,158	+		PFLU_RS10810	0.68	-0.4
2,381,158	+		PFLU_RS10810	0.68	+1.7
2,381,159	-		PFLU_RS10810	0.68	-0.2
2,381,159	-		PFLU_RS10810	0.68	+0.2
2,381,227	+		PFLU_RS10810	0.73	+0.3
2,381,237	+		PFLU_RS10810	0.74	+0.2
2,381,238	-		PFLU_RS10810	0.74	+0.4
2,381,327	+		PFLU_RS10810	0.80	+1.0
2,381,335	+		PFLU_RS10810	0.81	+0.7
2,381,335	+		PFLU_RS10810	0.81	+2.0
2,381,335	+		PFLU_RS10810	0.81	+1.2
2,381,370	-		PFLU_RS10810	0.84	+0.4
2,381,378	-		PFLU_RS10810	0.84	+2.5
2,381,378	-		PFLU_RS10810	0.84	+0.4
2,381,415	+		PFLU_RS10810	0.87	+1.0
2,381,416	-		PFLU_RS10810	0.87	+0.8
2,381,416	-		PFLU_RS10810	0.87	+0.8
2,381,416	-		PFLU_RS10810	0.87	-0.3
2,381,416	-		PFLU_RS10810	0.87	+1.1
2,381,485	+				+0.1
2,381,486	-				-0.0
2,381,517	+				+0.6
2,381,518	-				+1.7
2,381,518	-				-0.4
2,381,518	-				-0.9
2,381,518	-				+0.0
2,381,518	-				-2.3
2,381,518	-				-1.1
2,381,520	-				-0.7
2,381,520	-				+0.4
2,381,563	+				-0.5
2,381,618	+				+0.2
2,381,619	-				-0.2
2,381,630	-				-0.5
2,381,652	-				+1.0
2,381,760	+				-2.2
2,381,761	-				+0.7
2,381,766	-				+0.4
2,381,791	-				+3.4
2,381,810	+				-0.3
2,381,811	-				-2.0
2,381,811	-				+0.2
2,381,811	-				-1.6
2,381,866	+				-0.8
2,381,866	+				+0.8
2,381,866	+				+0.7
2,381,866	+				-0.4
2,381,866	+				+1.4
2,381,867	-				+0.6
2,381,867	-				-2.0
2,381,867	-				-0.3
2,381,867	-				-1.1
2,381,867	-				+1.0
2,381,867	-				-0.9
2,381,867	-				-1.4
2,381,867	-				+0.1
2,381,867	-				+0.2
2,381,897	+				+2.5
2,381,899	+				+0.9
2,381,899	+				-1.4
2,381,899	+				+1.1
2,381,899	+				+1.2
2,381,899	+				-1.0
2,381,899	+				-0.9
2,381,899	+				+0.7
2,381,899	+				+1.3
2,381,899	+				+0.5
2,381,899	+				+0.4
2,381,899	+				-0.2
2,381,900	-				+0.3
2,381,900	-				+2.1
2,381,900	-				-2.0
2,381,900	-				-0.1
2,381,900	-				+1.7
2,381,900	-				-0.0
2,381,900	-				+1.4
2,381,900	-				-1.4
2,381,900	-				+0.2
2,381,900	-				-1.8
2,381,900	-				+0.2
2,381,900	-				-0.5
2,381,903	+				+0.7
2,381,903	+				-0.0
2,381,903	+				+1.1
2,381,904	-				+0.7
2,381,904	-				+0.3
2,381,904	-				+1.5
2,382,062	+				+0.5
2,382,062	+				+0.4
2,382,062	+				+0.2
2,382,062	+				+0.7
2,382,063	-				+1.6
2,382,063	-				-0.8
2,382,063	-				-1.1
2,382,141	+				-0.2
2,382,186	+		PFLU_RS10815	0.11	-0.5
2,382,186	+		PFLU_RS10815	0.11	+0.2
2,382,219	-		PFLU_RS10815	0.14	-0.2
2,382,219	-		PFLU_RS10815	0.14	+0.3
2,382,219	-		PFLU_RS10815	0.14	+0.1
2,382,242	+		PFLU_RS10815	0.16	+1.0
2,382,242	+		PFLU_RS10815	0.16	+0.1
2,382,242	+		PFLU_RS10815	0.16	+0.7
2,382,242	+		PFLU_RS10815	0.16	-3.4
2,382,242	+		PFLU_RS10815	0.16	+1.3
2,382,243	-		PFLU_RS10815	0.16	-0.5
2,382,243	-		PFLU_RS10815	0.16	-0.7
2,382,243	-		PFLU_RS10815	0.16	-0.3
2,382,246	+		PFLU_RS10815	0.16	-0.3
2,382,247	-		PFLU_RS10815	0.16	+0.6
2,382,353	+		PFLU_RS10815	0.24	+1.4
2,382,353	+		PFLU_RS10815	0.24	+0.8
2,382,353	+		PFLU_RS10815	0.24	-0.2
2,382,353	+		PFLU_RS10815	0.24	-0.5
2,382,354	-		PFLU_RS10815	0.24	+0.7
2,382,354	-		PFLU_RS10815	0.24	+1.4
2,382,739	+		PFLU_RS10815	0.53	-2.6
2,382,927	+		PFLU_RS10815	0.68	+0.9
2,382,927	+		PFLU_RS10815	0.68	-1.4
2,382,927	+		PFLU_RS10815	0.68	-0.2
2,382,927	+		PFLU_RS10815	0.68	+0.5
2,382,927	+		PFLU_RS10815	0.68	-0.4
2,382,928	-		PFLU_RS10815	0.68	-1.7
2,382,928	-		PFLU_RS10815	0.68	+0.5
2,383,246	+				+0.1
2,383,246	+				-0.2
2,383,246	+				-0.3
2,383,247	-				+0.4
2,383,342	+				+0.4
2,383,368	-				+0.4
2,383,368	-				-0.7
2,383,371	+				-0.0
2,383,371	+				-1.6
2,383,406	+				+1.9
2,383,424	+				+2.4
2,383,424	+				+0.1
2,383,424	+				+0.9
2,383,424	+				-0.3
2,383,424	+				+1.3
2,383,424	+				-1.3
2,383,425	-				+1.6
2,383,425	-				+0.6
2,383,425	-				+0.2
2,383,425	-				+0.3
2,383,425	-				-0.6
2,383,425	-				+1.5
2,383,425	-				-2.3
2,383,425	-				+0.1
2,383,425	-				-0.5
2,383,430	+				-0.7
2,383,431	-				+0.6
2,383,431	-				-1.4
2,383,468	-				+0.9
2,383,490	+		PFLU_RS10820	0.11	+0.1
2,383,526	+		PFLU_RS10820	0.14	-2.3
2,383,527	-		PFLU_RS10820	0.14	+0.6
2,383,527	-		PFLU_RS10820	0.14	-2.5
2,383,608	+		PFLU_RS10820	0.21	+1.5
2,383,608	+		PFLU_RS10820	0.21	+1.1
2,383,608	+		PFLU_RS10820	0.21	+4.0
2,383,609	-		PFLU_RS10820	0.21	-2.5
2,383,745	+		PFLU_RS10820	0.32	-0.2
2,383,745	+		PFLU_RS10820	0.32	-0.3
2,383,745	+		PFLU_RS10820	0.32	-0.5
2,383,745	+		PFLU_RS10820	0.32	-0.4
2,383,745	+		PFLU_RS10820	0.32	-2.0
2,383,746	-		PFLU_RS10820	0.32	-0.2
2,383,889	+		PFLU_RS10820	0.44	+1.8
2,383,889	+		PFLU_RS10820	0.44	+0.4
2,383,889	+		PFLU_RS10820	0.44	+1.0
2,383,889	+		PFLU_RS10820	0.44	-0.2
2,383,889	+		PFLU_RS10820	0.44	+0.3
2,383,889	+		PFLU_RS10820	0.44	-0.6
2,383,889	+		PFLU_RS10820	0.44	+0.4
2,383,889	+		PFLU_RS10820	0.44	+0.4
2,383,889	+		PFLU_RS10820	0.44	+0.2
2,383,890	-		PFLU_RS10820	0.44	+1.0
2,383,890	-		PFLU_RS10820	0.44	+0.6
2,383,890	-		PFLU_RS10820	0.44	-0.2
2,383,890	-		PFLU_RS10820	0.44	+0.8
2,383,890	-		PFLU_RS10820	0.44	+0.2
2,383,905	-		PFLU_RS10820	0.46	+0.6
2,383,962	+		PFLU_RS10820	0.51	-0.2
2,383,963	-		PFLU_RS10820	0.51	+0.8
2,384,017	-		PFLU_RS10820	0.55	-2.2
2,384,048	+		PFLU_RS10820	0.58	-0.6
2,384,048	+		PFLU_RS10820	0.58	-0.3
2,384,048	+		PFLU_RS10820	0.58	-0.5
2,384,048	+		PFLU_RS10820	0.58	+0.8
2,384,049	-		PFLU_RS10820	0.58	-0.7
2,384,049	-		PFLU_RS10820	0.58	-1.2
2,384,049	-		PFLU_RS10820	0.58	-1.9
2,384,049	-		PFLU_RS10820	0.58	-0.2
2,384,118	-		PFLU_RS10820	0.64	+0.5
2,384,249	+		PFLU_RS10820	0.75	-0.7
2,384,249	+		PFLU_RS10820	0.75	+1.0
2,384,249	+		PFLU_RS10820	0.75	+0.3
2,384,250	-		PFLU_RS10820	0.75	-0.2