Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS09055

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,007,987	+		PFLU_RS09050	0.64	-2.6
2,008,000	+		PFLU_RS09050	0.64	+0.1
2,008,010	+		PFLU_RS09050	0.65	-0.5
2,008,010	+		PFLU_RS09050	0.65	-0.4
2,008,010	+		PFLU_RS09050	0.65	-0.2
2,008,010	+		PFLU_RS09050	0.65	-1.9
2,008,010	+		PFLU_RS09050	0.65	-1.0
2,008,010	+		PFLU_RS09050	0.65	+0.6
2,008,010	+		PFLU_RS09050	0.65	+1.6
2,008,010	+		PFLU_RS09050	0.65	+0.2
2,008,010	+		PFLU_RS09050	0.65	+0.4
2,008,010	+		PFLU_RS09050	0.65	+0.3
2,008,010	+		PFLU_RS09050	0.65	+0.1
2,008,010	+		PFLU_RS09050	0.65	+2.0
2,008,010	+		PFLU_RS09050	0.65	+0.6
2,008,010	+		PFLU_RS09050	0.65	-0.5
2,008,010	+		PFLU_RS09050	0.65	+0.9
2,008,010	+		PFLU_RS09050	0.65	+0.4
2,008,010	+		PFLU_RS09050	0.65	-0.7
2,008,010	+		PFLU_RS09050	0.65	-1.5
2,008,011	-		PFLU_RS09050	0.65	+0.1
2,008,011	-		PFLU_RS09050	0.65	-0.9
2,008,011	-		PFLU_RS09050	0.65	-1.9
2,008,011	-		PFLU_RS09050	0.65	+0.7
2,008,011	-		PFLU_RS09050	0.65	-0.0
2,008,011	-		PFLU_RS09050	0.65	-0.1
2,008,011	-		PFLU_RS09050	0.65	+1.0
2,008,011	-		PFLU_RS09050	0.65	-0.0
2,008,011	-		PFLU_RS09050	0.65	+1.5
2,008,011	-		PFLU_RS09050	0.65	+0.8
2,008,011	-		PFLU_RS09050	0.65	+1.5
2,008,011	-		PFLU_RS09050	0.65	-0.5
2,008,011	-		PFLU_RS09050	0.65	+1.1
2,008,011	-		PFLU_RS09050	0.65	+0.2
2,008,011	-		PFLU_RS09050	0.65	-1.4
2,008,011	-		PFLU_RS09050	0.65	+0.3
2,008,011	-		PFLU_RS09050	0.65	+0.1
2,008,011	-		PFLU_RS09050	0.65	-0.7
2,008,011	-		PFLU_RS09050	0.65	-0.0
2,008,011	-		PFLU_RS09050	0.65	-0.1
2,008,011	-		PFLU_RS09050	0.65	+0.3
2,008,011	-		PFLU_RS09050	0.65	-0.3
2,008,011	-		PFLU_RS09050	0.65	+0.6
2,008,014	+		PFLU_RS09050	0.65	-1.7
2,008,014	+		PFLU_RS09050	0.65	-1.4
2,008,014	+		PFLU_RS09050	0.65	-0.3
2,008,014	+		PFLU_RS09050	0.65	-3.7
2,008,014	+		PFLU_RS09050	0.65	-0.1
2,008,014	+		PFLU_RS09050	0.65	-0.0
2,008,014	+		PFLU_RS09050	0.65	-0.1
2,008,014	+		PFLU_RS09050	0.65	+0.4
2,008,014	+		PFLU_RS09050	0.65	+0.3
2,008,014	+		PFLU_RS09050	0.65	-0.0
2,008,014	+		PFLU_RS09050	0.65	+0.6
2,008,014	+		PFLU_RS09050	0.65	-0.8
2,008,014	+		PFLU_RS09050	0.65	-2.2
2,008,014	+		PFLU_RS09050	0.65	-1.2
2,008,015	-		PFLU_RS09050	0.65	-0.2
2,008,015	-		PFLU_RS09050	0.65	-0.2
2,008,015	-		PFLU_RS09050	0.65	-1.0
2,008,015	-		PFLU_RS09050	0.65	-2.0
2,008,015	-		PFLU_RS09050	0.65	+1.0
2,008,015	-		PFLU_RS09050	0.65	+1.1
2,008,015	-		PFLU_RS09050	0.65	-0.6
2,008,015	-		PFLU_RS09050	0.65	+1.0
2,008,015	-		PFLU_RS09050	0.65	-0.3
2,008,015	-		PFLU_RS09050	0.65	+0.3
2,008,016	+		PFLU_RS09050	0.65	-1.4
2,008,016	+		PFLU_RS09050	0.65	+0.4
2,008,016	+		PFLU_RS09050	0.65	-0.1
2,008,016	+		PFLU_RS09050	0.65	+0.1
2,008,016	+		PFLU_RS09050	0.65	+0.4
2,008,016	+		PFLU_RS09050	0.65	-2.4
2,008,016	+		PFLU_RS09050	0.65	-0.6
2,008,016	+		PFLU_RS09050	0.65	+1.0
2,008,016	+		PFLU_RS09050	0.65	-1.5
2,008,016	+		PFLU_RS09050	0.65	-1.3
2,008,016	+		PFLU_RS09050	0.65	-0.3
2,008,016	+		PFLU_RS09050	0.65	-0.2
2,008,017	-		PFLU_RS09050	0.65	-2.6
2,008,017	-		PFLU_RS09050	0.65	+1.2
2,008,017	-		PFLU_RS09050	0.65	+0.7
2,008,017	-		PFLU_RS09050	0.65	-0.0
2,008,017	-		PFLU_RS09050	0.65	+0.2
2,008,017	-		PFLU_RS09050	0.65	+0.8
2,008,017	-		PFLU_RS09050	0.65	+0.7
2,008,229	+		PFLU_RS09050	0.75	+0.2
2,008,229	+		PFLU_RS09050	0.75	-1.5
2,008,229	+		PFLU_RS09050	0.75	-1.0
2,008,229	+		PFLU_RS09050	0.75	+0.3
2,008,229	+		PFLU_RS09050	0.75	+1.3
2,008,229	+		PFLU_RS09050	0.75	+1.8
2,008,229	+		PFLU_RS09050	0.75	+0.7
2,008,229	+		PFLU_RS09050	0.75	-1.4
2,008,229	+		PFLU_RS09050	0.75	+1.2
2,008,229	+		PFLU_RS09050	0.75	+0.8
2,008,230	+		PFLU_RS09050	0.75	+0.8
2,008,230	-		PFLU_RS09050	0.75	-2.7
2,008,230	-		PFLU_RS09050	0.75	-2.8
2,008,230	-		PFLU_RS09050	0.75	-1.5
2,008,230	-		PFLU_RS09050	0.75	-0.6
2,008,230	-		PFLU_RS09050	0.75	-0.8
2,008,230	-		PFLU_RS09050	0.75	+1.1
2,008,230	-		PFLU_RS09050	0.75	-0.8
2,008,302	+		PFLU_RS09050	0.79	+1.5
2,008,340	+		PFLU_RS09050	0.81	-1.1
2,008,340	+		PFLU_RS09050	0.81	-0.3
2,008,340	+		PFLU_RS09050	0.81	-1.0
2,008,341	-		PFLU_RS09050	0.81	+1.1
2,008,341	-		PFLU_RS09050	0.81	+0.6
2,008,341	-		PFLU_RS09050	0.81	-0.4
2,008,341	-		PFLU_RS09050	0.81	+1.4
2,008,341	-		PFLU_RS09050	0.81	-0.5
2,008,341	-		PFLU_RS09050	0.81	+1.5
2,008,341	-		PFLU_RS09050	0.81	-1.6
2,008,383	+		PFLU_RS09050	0.83	+0.6
2,008,502	+		PFLU_RS09050	0.89	+1.0
2,008,502	+		PFLU_RS09050	0.89	-0.3
2,008,502	+		PFLU_RS09050	0.89	-0.4
2,008,502	+		PFLU_RS09050	0.89	-1.0
2,008,502	+		PFLU_RS09050	0.89	-0.8
2,008,503	-		PFLU_RS09050	0.89	-3.0
2,008,503	-		PFLU_RS09050	0.89	-0.5
2,008,503	-		PFLU_RS09050	0.89	-0.5
2,008,503	-		PFLU_RS09050	0.89	-0.4
2,008,503	-		PFLU_RS09050	0.89	-0.4
2,008,503	-		PFLU_RS09050	0.89	+1.1
2,008,532	+				+0.2
2,008,747	+				+0.9
2,008,747	+				-3.0
2,008,748	-				-1.7
2,008,775	+				+0.9
2,008,775	+				-0.5
2,008,775	+				+0.4
2,008,775	+				-0.3
2,008,775	+				+0.2
2,008,776	-				-2.3
2,008,776	-				-1.4
2,008,793	+				-1.3
2,008,793	+				-0.9
2,008,793	+				+0.1
2,008,794	-				-0.0
2,008,794	-				+0.7
2,008,794	-				+0.4
2,008,794	-				+1.1
2,008,794	-				-0.4
2,008,794	-				+0.2
2,008,797	+				-1.8
2,008,797	+				+0.7
2,008,798	-				-3.0
2,008,798	-				-1.6
2,008,816	+				-0.5
2,008,816	+				-1.9
2,008,816	+				-0.3
2,008,816	+				+0.5
2,008,817	-				-1.0
2,008,857	+				-1.0
2,008,857	+				-0.9
2,008,857	+				+0.2
2,008,857	+				-1.0
2,008,857	+				-0.4
2,008,857	+				-1.4
2,008,857	+				-1.1
2,008,857	+				+0.7
2,008,857	+				-0.4
2,008,857	+				-0.6
2,008,858	-				+0.6
2,008,858	-				-0.8
2,008,858	-				+1.3
2,008,858	-				+0.3
2,008,858	-				-0.9
2,008,866	+				+0.5
2,008,866	+				-2.1
2,008,866	+				-2.2
2,008,866	+				+0.7
2,008,866	+				-0.6
2,008,866	+				-2.4
2,008,866	+				-0.4
2,008,866	+				+1.2
2,008,866	+				-0.7
2,008,866	+				-0.0
2,008,866	+				-1.4
2,008,866	+				-0.0
2,008,866	+				+0.2
2,008,866	+				-2.0
2,008,866	+				-1.6
2,008,866	+				-0.3
2,008,866	+				+1.2
2,008,866	+				+0.6
2,008,866	+				-0.3
2,008,866	+				+0.8
2,008,866	+				-1.1
2,008,866	+				+0.1
2,008,866	+				+1.0
2,008,866	+				-0.2
2,008,867	-				+0.0
2,008,867	-				+0.6
2,008,867	-				-0.4
2,008,867	-				+0.8
2,008,867	-				+0.8
2,008,867	-				-0.8
2,008,867	-				+0.3
2,008,867	-				-1.4
2,008,867	-				-1.3
2,008,867	-				+0.2
2,008,867	-				-0.8
2,008,867	-				+1.1
2,008,867	-				-0.7
2,008,867	-				-2.2
2,008,867	-				+1.3
2,008,867	-				-1.2
2,008,867	-				+0.3
2,008,867	-				-1.1
2,008,867	-				-0.8
2,008,867	-				-0.1
2,008,932	+				-0.8
2,008,932	+				-1.0
2,008,932	+				-0.0
2,008,932	+				+0.6
2,008,932	+				+0.6
2,008,933	-				+0.5
2,008,933	-				+0.7
2,008,933	-				-0.8
2,008,934	+				-1.7
2,008,934	+				-0.6
2,008,934	+				-0.4
2,008,935	-				-1.4
2,008,974	+				-1.9
2,008,974	+				-0.2
2,008,975	-				-0.8
2,008,975	-				-0.0
2,008,975	-				-1.8
2,008,975	-				-0.0
2,009,128	+		PFLU_RS09055	0.15	-1.0
2,009,129	-		PFLU_RS09055	0.15	-0.8
2,009,129	-		PFLU_RS09055	0.15	-1.2
2,009,169	+		PFLU_RS09055	0.19	-2.6
2,009,170	-		PFLU_RS09055	0.19	-0.4
2,009,487	+		PFLU_RS09055	0.50	-1.2
2,009,488	-		PFLU_RS09055	0.50	-0.0
2,009,488	-		PFLU_RS09055	0.50	-0.0
2,009,488	-		PFLU_RS09055	0.50	-0.0
2,009,488	-		PFLU_RS09055	0.50	-1.6
2,009,500	+		PFLU_RS09055	0.51	-1.0
2,009,501	-		PFLU_RS09055	0.51	-1.9
2,009,743	+		PFLU_RS09055	0.75	-1.4
2,009,743	+		PFLU_RS09055	0.75	-2.2
2,009,743	+		PFLU_RS09055	0.75	-1.2
2,009,743	+		PFLU_RS09055	0.75	-2.3
2,009,743	+		PFLU_RS09055	0.75	-0.0
2,009,743	+		PFLU_RS09055	0.75	-1.4
2,009,743	+		PFLU_RS09055	0.75	-1.0
2,009,743	+		PFLU_RS09055	0.75	-0.8
2,009,743	+		PFLU_RS09055	0.75	-1.0
2,009,744	-		PFLU_RS09055	0.75	-0.4
2,009,744	-		PFLU_RS09055	0.75	-1.0
2,009,744	-		PFLU_RS09055	0.75	-1.6
2,009,744	-		PFLU_RS09055	0.75	-1.0
2,009,744	-		PFLU_RS09055	0.75	-1.2
2,009,744	-		PFLU_RS09055	0.75	-2.2
2,009,744	-		PFLU_RS09055	0.75	-1.0
2,009,869	+		PFLU_RS09055	0.87	-1.0
2,009,869	+		PFLU_RS09055	0.87	-1.9
2,009,869	+		PFLU_RS09055	0.87	-2.1
2,009,869	+		PFLU_RS09055	0.87	-2.8
2,009,869	+		PFLU_RS09055	0.87	-0.4
2,009,869	+		PFLU_RS09055	0.87	-1.2
2,009,869	+		PFLU_RS09055	0.87	-1.0
2,009,869	+		PFLU_RS09055	0.87	-1.0
2,009,869	+		PFLU_RS09055	0.87	+0.6
2,009,869	+		PFLU_RS09055	0.87	-0.4
2,009,869	+		PFLU_RS09055	0.87	-2.3
2,009,869	+		PFLU_RS09055	0.87	-0.8
2,009,869	+		PFLU_RS09055	0.87	-1.0
2,009,869	+		PFLU_RS09055	0.87	-0.0
2,009,869	+		PFLU_RS09055	0.87	-2.2
2,009,869	+		PFLU_RS09055	0.87	-1.6
2,009,869	+		PFLU_RS09055	0.87	-0.8
2,009,870	-		PFLU_RS09055	0.87	-1.4
2,009,870	-		PFLU_RS09055	0.87	-2.5
2,009,870	-		PFLU_RS09055	0.87	-0.4
2,009,870	-		PFLU_RS09055	0.87	-2.6
2,009,870	-		PFLU_RS09055	0.87	-1.6
2,009,870	-		PFLU_RS09055	0.87	-1.4
2,009,870	-		PFLU_RS09055	0.87	-0.4
2,009,870	-		PFLU_RS09055	0.87	-0.8
2,009,870	-		PFLU_RS09055	0.87	-1.0
2,009,870	-		PFLU_RS09055	0.87	-0.4
2,009,870	-		PFLU_RS09055	0.87	-2.1
2,009,870	-		PFLU_RS09055	0.87	-0.4
2,009,870	-		PFLU_RS09055	0.87	-1.8
2,009,870	-		PFLU_RS09055	0.87	-0.9
2,009,870	-		PFLU_RS09055	0.87	-1.6
2,009,870	-		PFLU_RS09055	0.87	-1.9
2,009,870	-		PFLU_RS09055	0.87	-0.0
2,009,870	-		PFLU_RS09055	0.87	-1.0
2,009,870	-		PFLU_RS09055	0.87	-2.2
2,009,976	+				-1.1
2,009,976	+				-0.2
2,009,977	-				-1.5
2,009,977	-				-1.0
2,010,038	+				+0.8
2,010,038	+				+1.6
2,010,039	-				-1.1
2,010,140	+		PFLU_RS09060	0.37	-1.9
2,010,140	+		PFLU_RS09060	0.37	+0.8
2,010,141	-		PFLU_RS09060	0.37	+1.6
2,010,152	+		PFLU_RS09060	0.41	+1.7
2,010,152	+		PFLU_RS09060	0.41	-2.0
2,010,152	+		PFLU_RS09060	0.41	-2.3
2,010,152	+		PFLU_RS09060	0.41	+0.1
2,010,152	+		PFLU_RS09060	0.41	-0.0
2,010,152	+		PFLU_RS09060	0.41	+0.6
2,010,153	-		PFLU_RS09060	0.41	+1.3
2,010,153	-		PFLU_RS09060	0.41	-1.4
2,010,153	-		PFLU_RS09060	0.41	-1.6
2,010,153	-		PFLU_RS09060	0.41	+0.9
2,010,153	-		PFLU_RS09060	0.41	-0.1
2,010,153	-		PFLU_RS09060	0.41	-0.4
2,010,153	-		PFLU_RS09060	0.41	-0.0
2,010,153	-		PFLU_RS09060	0.41	+0.9
2,010,153	-		PFLU_RS09060	0.41	+0.9
2,010,354	+				-0.3
2,010,354	+				+1.8
2,010,354	+				+1.6
2,010,354	+				+0.6
2,010,354	+				-0.5
2,010,354	+				+1.3
2,010,354	+				+1.0
2,010,354	+				+0.2
2,010,354	+				+1.2
2,010,355	-				-0.2
2,010,355	-				-1.4
2,010,355	-				+0.2
2,010,355	-				-1.0
2,010,355	-				+2.4
2,010,446	+		PFLU_RS09065	0.20	-0.2
2,010,446	+		PFLU_RS09065	0.20	+2.6
2,010,446	+		PFLU_RS09065	0.20	+1.2
2,010,505	+		PFLU_RS09065	0.33	+0.6
2,010,505	+		PFLU_RS09065	0.33	-0.3
2,010,505	+		PFLU_RS09065	0.33	+1.7
2,010,505	+		PFLU_RS09065	0.33	+0.2
2,010,505	+		PFLU_RS09065	0.33	-0.4
2,010,506	-		PFLU_RS09065	0.34	-0.2
2,010,506	-		PFLU_RS09065	0.34	+0.7
2,010,803	-				+1.2
2,010,829	+				+0.5
2,010,829	+				-2.3
2,010,829	+				+0.6
2,010,829	+				-0.8
2,010,829	+				-0.5
2,010,829	+				+0.2
2,010,829	+				+0.4
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