Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07940

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,769,550	+				+0.6
1,769,550	+				+1.2
1,769,550	+				+1.1
1,769,550	+				+0.1
1,769,550	+				+1.1
1,769,550	+				-0.2
1,769,550	+				+0.1
1,769,550	+				-0.8
1,769,551	-				-1.9
1,769,551	-				-0.6
1,769,551	-				-0.3
1,769,551	-				+1.5
1,769,551	-				+0.8
1,769,551	-				-0.1
1,769,551	-				+0.4
1,769,551	-				+1.0
1,769,554	+				-2.2
1,769,554	+				-0.4
1,769,555	-				+0.5
1,769,555	-				-0.6
1,769,555	-				+2.0
1,769,555	-				+0.5
1,769,555	-				-0.3
1,769,555	-				+0.7
1,769,555	-				+0.2
1,769,555	-				+0.4
1,769,555	-				+0.2
1,769,556	+				+0.0
1,769,556	+				-0.7
1,769,556	+				-0.3
1,769,556	+				+0.9
1,769,556	+				-0.1
1,769,556	+				+1.2
1,769,556	+				-0.6
1,769,556	+				-0.5
1,769,557	-				+0.9
1,769,557	-				+0.7
1,769,557	-				+0.3
1,769,557	-				+1.0
1,769,557	-				-0.3
1,769,557	-				-0.5
1,769,557	-				+0.1
1,769,557	-				-2.3
1,769,557	-				-2.1
1,769,560	+				-2.1
1,769,561	-				+1.8
1,769,561	-				-1.2
1,769,664	+		PFLU_RS07935	0.20	+0.8
1,769,664	+		PFLU_RS07935	0.20	+0.4
1,769,664	+		PFLU_RS07935	0.20	-0.6
1,769,664	+		PFLU_RS07935	0.20	-1.2
1,769,664	+		PFLU_RS07935	0.20	+0.9
1,769,664	+		PFLU_RS07935	0.20	+1.1
1,769,665	-		PFLU_RS07935	0.20	+0.0
1,770,136	-				+1.0
1,770,136	-				-0.4
1,770,136	-				-0.3
1,770,136	-				-1.5
1,770,237	+				+0.1
1,770,238	-				-1.3
1,770,265	+				-1.2
1,770,265	+				-1.9
1,770,265	+				+0.8
1,770,265	+				+1.8
1,770,266	-				+0.8
1,770,284	+				-2.1
1,770,320	+				+0.1
1,770,320	+				+1.7
1,770,320	+				+0.3
1,770,320	+				+0.0
1,770,321	-				+0.4
1,770,321	-				-0.5
1,770,324	+				-1.1
1,770,324	+				+0.8
1,770,324	+				+0.3
1,770,324	+				-0.1
1,770,324	+				+1.1
1,770,324	+				+1.1
1,770,324	+				+0.3
1,770,324	+				-0.9
1,770,324	+				+0.9
1,770,324	+				+1.5
1,770,324	+				+0.0
1,770,324	+				+2.2
1,770,324	+				-1.2
1,770,324	+				-3.2
1,770,324	+				-0.8
1,770,324	+				-0.9
1,770,324	+				+0.9
1,770,324	+				-1.5
1,770,324	+				+0.3
1,770,324	+				+1.4
1,770,324	+				+0.7
1,770,324	+				+0.5
1,770,324	+				+1.4
1,770,324	+				-1.1
1,770,324	+				+0.5
1,770,324	+				+0.7
1,770,324	+				-3.3
1,770,324	+				+0.3
1,770,325	-				+0.2
1,770,325	-				-0.2
1,770,325	-				+3.0
1,770,325	-				-0.0
1,770,325	-				+1.0
1,770,325	-				-0.5
1,770,325	-				-3.2
1,770,325	-				-0.9
1,770,325	-				-1.5
1,770,325	-				+1.5
1,770,325	-				+0.2
1,770,325	-				+2.0
1,770,325	-				+0.4
1,770,325	-				-0.7
1,770,325	-				+0.5
1,770,325	-				+0.3
1,770,325	-				+0.2
1,770,325	-				+0.8
1,770,325	-				+0.7
1,770,325	-				+1.3
1,770,325	-				+1.3
1,770,325	-				-2.4
1,770,325	-				-0.3
1,770,325	-				-2.6
1,770,325	-				-0.9
1,770,325	-				+0.9
1,770,332	+				-0.2
1,770,332	+				-0.3
1,770,332	+				+0.8
1,770,332	+				-1.5
1,770,332	+				-0.0
1,770,333	-				+0.4
1,770,333	-				-0.3
1,770,333	-				-1.1
1,770,333	-				+2.3
1,770,333	-				-0.6
1,770,334	+				-0.2
1,770,334	+				+0.6
1,770,334	+				+1.2
1,770,334	+				+1.4
1,770,334	+				+0.1
1,770,334	+				-0.4
1,770,334	+				-0.3
1,770,334	+				+0.1
1,770,334	+				+0.4
1,770,334	+				+0.7
1,770,334	+				-1.3
1,770,334	+				+0.5
1,770,334	+				-1.0
1,770,334	+				+2.2
1,770,335	-				-2.7
1,770,335	-				-1.0
1,770,335	-				-0.9
1,770,335	-				-1.8
1,770,335	-				+1.1
1,770,335	-				+0.2
1,770,335	-				+0.4
1,770,335	-				-0.9
1,770,335	-				-3.0
1,770,363	+				+1.1
1,770,363	+				+0.4
1,770,376	+				-1.8
1,770,376	+				-0.1
1,770,383	-				+0.4
1,770,383	-				-1.5
1,770,383	-				+1.4
1,770,383	-				-0.0
1,770,406	+				-0.6
1,770,406	+				+1.2
1,770,406	+				+0.3
1,770,407	-				+0.1
1,770,421	+				+0.9
1,770,421	+				+0.6
1,770,421	+				+3.0
1,770,421	+				-2.7
1,770,421	+				+0.6
1,770,422	-				-0.1
1,770,422	-				-1.0
1,770,422	-				+0.8
1,770,486	+				-0.3
1,770,486	+				+1.2
1,770,487	-				-1.0
1,770,487	-				-0.2
1,770,487	-				+0.4
1,770,487	-				+0.6
1,770,487	-				-1.2
1,770,487	-				+0.7
1,770,491	+				-2.0
1,770,491	+				+0.5
1,770,491	+				+1.6
1,770,491	+				-0.0
1,770,491	+				+1.8
1,770,491	+				-1.3
1,770,491	+				+0.2
1,770,491	+				-0.1
1,770,491	+				+0.6
1,770,491	+				-1.6
1,770,492	-				+0.9
1,770,492	-				+1.4
1,770,492	-				+0.3
1,770,498	+				-0.9
1,770,498	+				-0.2
1,770,499	-				-0.4
1,770,516	+				-0.8
1,770,556	+				-1.2
1,770,557	-				+0.7
1,770,557	-				+2.2
1,770,557	-				-0.9
1,770,557	-				+1.0
1,770,557	-				+0.8
1,770,557	-				+1.0
1,770,636	+				+0.4
1,770,636	+				-0.1
1,770,636	+				-2.0
1,770,636	+				-0.6
1,770,636	+				-0.7
1,770,636	+				-1.5
1,770,636	+				+0.1
1,770,636	+				-0.4
1,770,637	-				-0.4
1,770,637	-				+1.1
1,770,637	-				-1.1
1,770,637	-				-2.2
1,770,637	-				+0.5
1,770,637	-				-0.3
1,770,637	-				-0.5
1,770,764	+		PFLU_RS07940	0.16	+0.5
1,770,764	+		PFLU_RS07940	0.16	-1.0
1,770,764	+		PFLU_RS07940	0.16	+1.7
1,770,764	+		PFLU_RS07940	0.16	-0.9
1,770,764	+		PFLU_RS07940	0.16	-1.1
1,770,764	+		PFLU_RS07940	0.16	+0.7
1,770,765	-		PFLU_RS07940	0.16	-1.2
1,770,765	-		PFLU_RS07940	0.16	-1.8
1,770,765	-		PFLU_RS07940	0.16	-0.0
1,770,765	-		PFLU_RS07940	0.16	+1.6
1,770,765	-		PFLU_RS07940	0.16	-0.3
1,770,765	-		PFLU_RS07940	0.16	+0.3
1,770,962	+		PFLU_RS07940	0.28	-1.1
1,770,963	-		PFLU_RS07940	0.28	+0.1
1,771,005	-		PFLU_RS07940	0.30	+0.1
1,771,162	+		PFLU_RS07940	0.40	-0.5
1,771,236	-		PFLU_RS07940	0.45	+0.1
1,771,236	-		PFLU_RS07940	0.45	-0.3
1,771,430	+		PFLU_RS07940	0.56	-0.6
1,771,431	-		PFLU_RS07940	0.56	+0.8
1,771,562	+		PFLU_RS07940	0.64	+0.0
1,771,563	-		PFLU_RS07940	0.64	+1.1
1,771,563	-		PFLU_RS07940	0.64	+0.6
1,771,563	-		PFLU_RS07940	0.64	+2.4
1,771,621	+		PFLU_RS07940	0.68	+0.3
1,771,622	-		PFLU_RS07940	0.68	+2.4
1,771,631	+		PFLU_RS07940	0.68	+0.0
1,771,703	+		PFLU_RS07940	0.73	-0.3
1,771,703	+		PFLU_RS07940	0.73	-2.4
1,771,703	+		PFLU_RS07940	0.73	-0.6
1,771,703	+		PFLU_RS07940	0.73	+1.0
1,771,703	+		PFLU_RS07940	0.73	-1.2
1,771,703	+		PFLU_RS07940	0.73	-1.5
1,771,704	-		PFLU_RS07940	0.73	+2.9
1,771,926	+		PFLU_RS07940	0.86	+0.2
1,771,926	+		PFLU_RS07940	0.86	+0.0
1,771,926	+		PFLU_RS07940	0.86	-0.9
1,771,926	+		PFLU_RS07940	0.86	-1.5
1,771,973	+		PFLU_RS07940	0.89	-1.3
1,771,973	+		PFLU_RS07940	0.89	-1.5
1,771,974	-		PFLU_RS07940	0.89	-1.1
1,772,024	+				+0.3
1,772,024	+				+1.4
1,772,024	+				+1.2
1,772,024	+				-0.1
1,772,025	-				+0.9
1,772,036	-				+1.0
1,772,147	+				+1.6
1,772,147	+				+0.5
1,772,148	-				+0.8
1,772,148	-				-2.4
1,772,148	-				-2.8
1,772,236	-				+1.6
1,772,240	-				+0.4
1,772,328	+		PFLU_RS07945	0.14	-0.8
1,772,328	+		PFLU_RS07945	0.14	+0.3
1,772,329	-		PFLU_RS07945	0.14	-0.6
1,772,408	+		PFLU_RS07945	0.26	+1.2
1,772,408	+		PFLU_RS07945	0.26	-0.6
1,772,409	-		PFLU_RS07945	0.26	+1.2
1,772,631	+		PFLU_RS07945	0.60	+0.6
1,772,631	+		PFLU_RS07945	0.60	+0.6
1,772,631	+		PFLU_RS07945	0.60	-1.3
1,772,631	+		PFLU_RS07945	0.60	-1.4
1,772,632	-		PFLU_RS07945	0.60	-0.2
1,772,632	-		PFLU_RS07945	0.60	-0.0
1,772,632	-		PFLU_RS07945	0.60	-0.0
1,772,632	-		PFLU_RS07945	0.60	+0.4
1,772,636	-		PFLU_RS07945	0.60	-0.1
1,772,636	-		PFLU_RS07945	0.60	+0.5
1,772,768	+		PFLU_RS07945	0.80	+0.9
1,772,769	-		PFLU_RS07945	0.80	-3.2
1,772,884	+				+0.2
1,772,885	-				-0.5
1,772,931	+				+1.0
1,772,982	+				-2.0
1,772,982	+				+1.8
1,772,982	+				-0.6
1,773,013	+				+0.9
1,773,014	-				-0.8
1,773,014	-				+2.5
1,773,058	-				-0.8
1,773,058	-				+0.7
1,773,104	+		PFLU_RS07950	0.12	+0.1