Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07825

Experiment: NAG (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS31250 and PFLU_RS07820 are separated by 12 nucleotidesPFLU_RS07820 and PFLU_RS07825 are separated by 45 nucleotidesPFLU_RS07825 and PFLU_RS07830 are separated by 151 nucleotides PFLU_RS31250: PFLU_RS31250 - Pyocin activator protein PrtN, at 1,739,663 to 1,739,752 _RS31250 PFLU_RS07820: PFLU_RS07820 - phage major capsid protein, P2 family, at 1,739,765 to 1,740,658 _RS07820 PFLU_RS07825: PFLU_RS07825 - GPO family capsid scaffolding protein, at 1,740,704 to 1,741,582 _RS07825 PFLU_RS07830: PFLU_RS07830 - terminase ATPase subunit family protein, at 1,741,734 to 1,743,491 _RS07830 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1739.705 kb on - strand, within PFLU_RS31250at 1739.705 kb on - strand, within PFLU_RS31250at 1739.705 kb on - strand, within PFLU_RS31250at 1739.705 kb on - strand, within PFLU_RS31250at 1739.733 kb on + strand, within PFLU_RS31250at 1739.733 kb on + strand, within PFLU_RS31250at 1739.733 kb on + strand, within PFLU_RS31250at 1739.733 kb on + strand, within PFLU_RS31250at 1739.734 kb on - strand, within PFLU_RS31250at 1739.734 kb on - strand, within PFLU_RS31250at 1739.734 kb on - strand, within PFLU_RS31250at 1739.734 kb on - strand, within PFLU_RS31250at 1739.793 kb on + strandat 1739.932 kb on + strand, within PFLU_RS07820at 1739.932 kb on + strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.933 kb on - strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.949 kb on + strand, within PFLU_RS07820at 1739.950 kb on - strand, within PFLU_RS07820at 1740.007 kb on - strand, within PFLU_RS07820at 1740.107 kb on + strand, within PFLU_RS07820at 1740.107 kb on + strand, within PFLU_RS07820at 1740.366 kb on + strand, within PFLU_RS07820at 1740.367 kb on - strand, within PFLU_RS07820at 1740.439 kb on + strand, within PFLU_RS07820at 1740.440 kb on - strand, within PFLU_RS07820at 1740.624 kb on + strandat 1740.625 kb on - strandat 1740.625 kb on - strandat 1740.633 kb on + strandat 1740.633 kb on + strandat 1740.633 kb on + strandat 1740.633 kb on + strandat 1740.634 kb on - strandat 1740.634 kb on - strandat 1740.634 kb on - strandat 1740.634 kb on - strandat 1740.634 kb on - strandat 1740.760 kb on - strandat 1740.902 kb on + strand, within PFLU_RS07825at 1740.902 kb on + strand, within PFLU_RS07825at 1740.902 kb on + strand, within PFLU_RS07825at 1740.903 kb on - strand, within PFLU_RS07825at 1740.903 kb on - strand, within PFLU_RS07825at 1740.903 kb on - strand, within PFLU_RS07825at 1741.251 kb on + strand, within PFLU_RS07825at 1741.251 kb on + strand, within PFLU_RS07825at 1741.251 kb on + strand, within PFLU_RS07825at 1741.251 kb on + strand, within PFLU_RS07825at 1741.252 kb on - strand, within PFLU_RS07825at 1741.377 kb on + strand, within PFLU_RS07825at 1741.377 kb on + strand, within PFLU_RS07825at 1741.378 kb on - strand, within PFLU_RS07825at 1741.414 kb on + strand, within PFLU_RS07825at 1741.414 kb on + strand, within PFLU_RS07825at 1741.414 kb on + strand, within PFLU_RS07825at 1741.414 kb on + strand, within PFLU_RS07825at 1741.414 kb on + strand, within PFLU_RS07825at 1741.415 kb on - strand, within PFLU_RS07825at 1741.415 kb on - strand, within PFLU_RS07825at 1741.415 kb on - strand, within PFLU_RS07825at 1741.415 kb on - strand, within PFLU_RS07825at 1741.415 kb on - strand, within PFLU_RS07825at 1741.415 kb on - strand, within PFLU_RS07825at 1741.440 kb on + strand, within PFLU_RS07825at 1741.440 kb on + strand, within PFLU_RS07825at 1741.440 kb on + strand, within PFLU_RS07825at 1741.441 kb on - strand, within PFLU_RS07825at 1741.441 kb on - strand, within PFLU_RS07825at 1741.441 kb on - strand, within PFLU_RS07825at 1741.441 kb on - strand, within PFLU_RS07825at 1741.441 kb on - strand, within PFLU_RS07825at 1741.441 kb on - strand, within PFLU_RS07825at 1741.441 kb on - strand, within PFLU_RS07825at 1741.455 kb on + strand, within PFLU_RS07825at 1741.456 kb on - strand, within PFLU_RS07825at 1741.456 kb on - strand, within PFLU_RS07825at 1741.456 kb on - strand, within PFLU_RS07825at 1741.456 kb on - strand, within PFLU_RS07825at 1741.670 kb on + strandat 1741.670 kb on + strandat 1741.670 kb on + strandat 1741.670 kb on + strandat 1741.671 kb on - strandat 1741.671 kb on - strandat 1741.683 kb on + strandat 1741.683 kb on + strandat 1741.683 kb on + strandat 1741.683 kb on + strandat 1741.684 kb on - strandat 1741.706 kb on + strandat 1741.789 kb on - strandat 1741.789 kb on - strandat 1741.789 kb on - strandat 1741.850 kb on - strandat 1741.901 kb on + strandat 1741.968 kb on + strand, within PFLU_RS07830at 1741.969 kb on - strand, within PFLU_RS07830at 1741.969 kb on - strand, within PFLU_RS07830at 1741.988 kb on - strand, within PFLU_RS07830at 1741.988 kb on - strand, within PFLU_RS07830at 1741.988 kb on - strand, within PFLU_RS07830at 1741.988 kb on - strand, within PFLU_RS07830at 1741.988 kb on - strand, within PFLU_RS07830at 1741.988 kb on - strand, within PFLU_RS07830at 1742.066 kb on - strand, within PFLU_RS07830at 1742.099 kb on + strand, within PFLU_RS07830at 1742.184 kb on + strand, within PFLU_RS07830at 1742.185 kb on - strand, within PFLU_RS07830at 1742.185 kb on - strand, within PFLU_RS07830at 1742.185 kb on - strand, within PFLU_RS07830at 1742.185 kb on - strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.244 kb on + strand, within PFLU_RS07830at 1742.245 kb on - strand, within PFLU_RS07830at 1742.245 kb on - strand, within PFLU_RS07830at 1742.245 kb on - strand, within PFLU_RS07830at 1742.245 kb on - strand, within PFLU_RS07830at 1742.245 kb on - strand, within PFLU_RS07830at 1742.245 kb on - strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.247 kb on + strand, within PFLU_RS07830at 1742.248 kb on - strand, within PFLU_RS07830at 1742.299 kb on + strand, within PFLU_RS07830at 1742.299 kb on + strand, within PFLU_RS07830at 1742.299 kb on + strand, within PFLU_RS07830at 1742.299 kb on + strand, within PFLU_RS07830at 1742.300 kb on - strand, within PFLU_RS07830at 1742.300 kb on - strand, within PFLU_RS07830at 1742.300 kb on - strand, within PFLU_RS07830at 1742.300 kb on - strand, within PFLU_RS07830at 1742.330 kb on + strand, within PFLU_RS07830at 1742.330 kb on + strand, within PFLU_RS07830at 1742.331 kb on - strand, within PFLU_RS07830at 1742.331 kb on - strand, within PFLU_RS07830at 1742.343 kb on + strand, within PFLU_RS07830at 1742.343 kb on + strand, within PFLU_RS07830at 1742.343 kb on + strand, within PFLU_RS07830at 1742.343 kb on + strand, within PFLU_RS07830at 1742.343 kb on + strand, within PFLU_RS07830at 1742.343 kb on + strand, within PFLU_RS07830at 1742.344 kb on - strand, within PFLU_RS07830at 1742.460 kb on + strand, within PFLU_RS07830at 1742.476 kb on - strand, within PFLU_RS07830at 1742.501 kb on + strand, within PFLU_RS07830at 1742.502 kb on - strand, within PFLU_RS07830at 1742.502 kb on - strand, within PFLU_RS07830at 1742.519 kb on + strand, within PFLU_RS07830at 1742.520 kb on - strand, within PFLU_RS07830at 1742.554 kb on - strand, within PFLU_RS07830at 1742.565 kb on + strand, within PFLU_RS07830

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C); with MOPS
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1,739,705 - PFLU_RS31250 0.47 -0.6
1,739,705 - PFLU_RS31250 0.47 -1.7
1,739,705 - PFLU_RS31250 0.47 +0.9
1,739,705 - PFLU_RS31250 0.47 -1.7
1,739,733 + PFLU_RS31250 0.78 -0.4
1,739,733 + PFLU_RS31250 0.78 +0.7
1,739,733 + PFLU_RS31250 0.78 -1.1
1,739,733 + PFLU_RS31250 0.78 -0.0
1,739,734 - PFLU_RS31250 0.79 +1.4
1,739,734 - PFLU_RS31250 0.79 +1.4
1,739,734 - PFLU_RS31250 0.79 -0.8
1,739,734 - PFLU_RS31250 0.79 +0.2
1,739,793 + -1.1
1,739,932 + PFLU_RS07820 0.19 +0.3
1,739,932 + PFLU_RS07820 0.19 +0.1
1,739,933 - PFLU_RS07820 0.19 +1.3
1,739,933 - PFLU_RS07820 0.19 +0.1
1,739,933 - PFLU_RS07820 0.19 +0.4
1,739,933 - PFLU_RS07820 0.19 -1.4
1,739,933 - PFLU_RS07820 0.19 -2.1
1,739,933 - PFLU_RS07820 0.19 -1.3
1,739,933 - PFLU_RS07820 0.19 +1.5
1,739,933 - PFLU_RS07820 0.19 +0.4
1,739,933 - PFLU_RS07820 0.19 -0.2
1,739,949 + PFLU_RS07820 0.21 +0.1
1,739,949 + PFLU_RS07820 0.21 -0.0
1,739,949 + PFLU_RS07820 0.21 +0.6
1,739,949 + PFLU_RS07820 0.21 +0.1
1,739,949 + PFLU_RS07820 0.21 +0.1
1,739,949 + PFLU_RS07820 0.21 +0.6
1,739,949 + PFLU_RS07820 0.21 +1.6
1,739,949 + PFLU_RS07820 0.21 +0.0
1,739,950 - PFLU_RS07820 0.21 -0.3
1,740,007 - PFLU_RS07820 0.27 -1.0
1,740,107 + PFLU_RS07820 0.38 +0.7
1,740,107 + PFLU_RS07820 0.38 +0.7
1,740,366 + PFLU_RS07820 0.67 -0.5
1,740,367 - PFLU_RS07820 0.67 +2.1
1,740,439 + PFLU_RS07820 0.75 +0.1
1,740,440 - PFLU_RS07820 0.76 +0.4
1,740,624 + +1.1
1,740,625 - +1.1
1,740,625 - -2.1
1,740,633 + +0.6
1,740,633 + -1.3
1,740,633 + -0.2
1,740,633 + +1.2
1,740,634 - +1.6
1,740,634 - -2.4
1,740,634 - -0.8
1,740,634 - -0.6
1,740,634 - -0.6
1,740,760 - +0.5
1,740,902 + PFLU_RS07825 0.23 +0.5
1,740,902 + PFLU_RS07825 0.23 -0.8
1,740,902 + PFLU_RS07825 0.23 +0.9
1,740,903 - PFLU_RS07825 0.23 +0.4
1,740,903 - PFLU_RS07825 0.23 +0.1
1,740,903 - PFLU_RS07825 0.23 -1.3
1,741,251 + PFLU_RS07825 0.62 +1.7
1,741,251 + PFLU_RS07825 0.62 +0.3
1,741,251 + PFLU_RS07825 0.62 -0.6
1,741,251 + PFLU_RS07825 0.62 -0.6
1,741,252 - PFLU_RS07825 0.62 -0.6
1,741,377 + PFLU_RS07825 0.77 +1.4
1,741,377 + PFLU_RS07825 0.77 -0.5
1,741,378 - PFLU_RS07825 0.77 -0.3
1,741,414 + PFLU_RS07825 0.81 +1.0
1,741,414 + PFLU_RS07825 0.81 -0.3
1,741,414 + PFLU_RS07825 0.81 -2.1
1,741,414 + PFLU_RS07825 0.81 +0.6
1,741,414 + PFLU_RS07825 0.81 +0.1
1,741,415 - PFLU_RS07825 0.81 +0.9
1,741,415 - PFLU_RS07825 0.81 -1.7
1,741,415 - PFLU_RS07825 0.81 -1.0
1,741,415 - PFLU_RS07825 0.81 +1.4
1,741,415 - PFLU_RS07825 0.81 +0.4
1,741,415 - PFLU_RS07825 0.81 +3.7
1,741,440 + PFLU_RS07825 0.84 -3.0
1,741,440 + PFLU_RS07825 0.84 -0.6
1,741,440 + PFLU_RS07825 0.84 +0.2
1,741,441 - PFLU_RS07825 0.84 -0.6
1,741,441 - PFLU_RS07825 0.84 +1.7
1,741,441 - PFLU_RS07825 0.84 -2.0
1,741,441 - PFLU_RS07825 0.84 +0.7
1,741,441 - PFLU_RS07825 0.84 +0.6
1,741,441 - PFLU_RS07825 0.84 +0.6
1,741,441 - PFLU_RS07825 0.84 +0.4
1,741,455 + PFLU_RS07825 0.85 +0.3
1,741,456 - PFLU_RS07825 0.86 +0.1
1,741,456 - PFLU_RS07825 0.86 +0.4
1,741,456 - PFLU_RS07825 0.86 -1.2
1,741,456 - PFLU_RS07825 0.86 +0.1
1,741,670 + +0.5
1,741,670 + -0.1
1,741,670 + +2.4
1,741,670 + +0.1
1,741,671 - +0.2
1,741,671 - +1.3
1,741,683 + -1.4
1,741,683 + -1.3
1,741,683 + +0.7
1,741,683 + +2.0
1,741,684 - +1.6
1,741,706 + -0.6
1,741,789 - +1.1
1,741,789 - +0.9
1,741,789 - +0.6
1,741,850 - +0.5
1,741,901 + -0.0
1,741,968 + PFLU_RS07830 0.13 +0.4
1,741,969 - PFLU_RS07830 0.13 -0.6
1,741,969 - PFLU_RS07830 0.13 +0.3
1,741,988 - PFLU_RS07830 0.14 -1.7
1,741,988 - PFLU_RS07830 0.14 +0.9
1,741,988 - PFLU_RS07830 0.14 -0.3
1,741,988 - PFLU_RS07830 0.14 -0.0
1,741,988 - PFLU_RS07830 0.14 +0.1
1,741,988 - PFLU_RS07830 0.14 -0.2
1,742,066 - PFLU_RS07830 0.19 -3.7
1,742,099 + PFLU_RS07830 0.21 -0.2
1,742,184 + PFLU_RS07830 0.26 -1.1
1,742,185 - PFLU_RS07830 0.26 +0.5
1,742,185 - PFLU_RS07830 0.26 -0.4
1,742,185 - PFLU_RS07830 0.26 -0.1
1,742,185 - PFLU_RS07830 0.26 -1.0
1,742,244 + PFLU_RS07830 0.29 -0.8
1,742,244 + PFLU_RS07830 0.29 +1.3
1,742,244 + PFLU_RS07830 0.29 +0.8
1,742,244 + PFLU_RS07830 0.29 -1.1
1,742,244 + PFLU_RS07830 0.29 -0.3
1,742,244 + PFLU_RS07830 0.29 +1.6
1,742,244 + PFLU_RS07830 0.29 +1.0
1,742,244 + PFLU_RS07830 0.29 -1.0
1,742,244 + PFLU_RS07830 0.29 +0.2
1,742,245 - PFLU_RS07830 0.29 -1.5
1,742,245 - PFLU_RS07830 0.29 -1.1
1,742,245 - PFLU_RS07830 0.29 +0.3
1,742,245 - PFLU_RS07830 0.29 -3.2
1,742,245 - PFLU_RS07830 0.29 +0.1
1,742,245 - PFLU_RS07830 0.29 +0.7
1,742,247 + PFLU_RS07830 0.29 +0.0
1,742,247 + PFLU_RS07830 0.29 +0.8
1,742,247 + PFLU_RS07830 0.29 +1.4
1,742,247 + PFLU_RS07830 0.29 +1.5
1,742,247 + PFLU_RS07830 0.29 +0.1
1,742,247 + PFLU_RS07830 0.29 -0.7
1,742,247 + PFLU_RS07830 0.29 +0.1
1,742,247 + PFLU_RS07830 0.29 +1.0
1,742,247 + PFLU_RS07830 0.29 +0.3
1,742,248 - PFLU_RS07830 0.29 +0.9
1,742,299 + PFLU_RS07830 0.32 +0.1
1,742,299 + PFLU_RS07830 0.32 +2.4
1,742,299 + PFLU_RS07830 0.32 -1.4
1,742,299 + PFLU_RS07830 0.32 +0.7
1,742,300 - PFLU_RS07830 0.32 -0.0
1,742,300 - PFLU_RS07830 0.32 -1.9
1,742,300 - PFLU_RS07830 0.32 +3.1
1,742,300 - PFLU_RS07830 0.32 -1.7
1,742,330 + PFLU_RS07830 0.34 +2.0
1,742,330 + PFLU_RS07830 0.34 +0.3
1,742,331 - PFLU_RS07830 0.34 +0.7
1,742,331 - PFLU_RS07830 0.34 +1.5
1,742,343 + PFLU_RS07830 0.35 +0.1
1,742,343 + PFLU_RS07830 0.35 -3.4
1,742,343 + PFLU_RS07830 0.35 +0.4
1,742,343 + PFLU_RS07830 0.35 +0.3
1,742,343 + PFLU_RS07830 0.35 +0.7
1,742,343 + PFLU_RS07830 0.35 +1.2
1,742,344 - PFLU_RS07830 0.35 -0.1
1,742,460 + PFLU_RS07830 0.41 +0.8
1,742,476 - PFLU_RS07830 0.42 +0.1
1,742,501 + PFLU_RS07830 0.44 -0.2
1,742,502 - PFLU_RS07830 0.44 -1.0
1,742,502 - PFLU_RS07830 0.44 +1.0
1,742,519 + PFLU_RS07830 0.45 +0.6
1,742,520 - PFLU_RS07830 0.45 +0.1
1,742,554 - PFLU_RS07830 0.47 -0.1
1,742,565 + PFLU_RS07830 0.47 +2.4

Or see this region's nucleotide sequence