Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04495

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,006,694	+		PFLU_RS04485	0.59	+1.5
1,006,695	-		PFLU_RS04485	0.59	+1.0
1,006,695	-		PFLU_RS04485	0.59	-1.2
1,006,750	+		PFLU_RS04485	0.68	+1.8
1,006,800	+		PFLU_RS04485	0.76	-0.7
1,006,800	+		PFLU_RS04485	0.76	-1.5
1,006,800	+		PFLU_RS04485	0.76	+0.8
1,006,800	+		PFLU_RS04485	0.76	-0.4
1,006,800	+		PFLU_RS04485	0.76	-0.6
1,006,801	-		PFLU_RS04485	0.76	-0.9
1,006,801	-		PFLU_RS04485	0.76	+1.2
1,006,801	-		PFLU_RS04485	0.76	+3.1
1,006,801	-		PFLU_RS04485	0.76	+0.1
1,006,814	+		PFLU_RS04485	0.78	-1.7
1,006,814	+		PFLU_RS04485	0.78	+1.5
1,006,815	-		PFLU_RS04485	0.78	+1.1
1,006,815	-		PFLU_RS04485	0.78	+0.4
1,006,833	+		PFLU_RS04485	0.81	+1.8
1,006,833	+		PFLU_RS04485	0.81	+0.8
1,006,833	+		PFLU_RS04485	0.81	+2.3
1,006,834	-		PFLU_RS04485	0.81	-0.1
1,006,834	-		PFLU_RS04485	0.81	+1.3
1,006,834	-		PFLU_RS04485	0.81	+1.1
1,006,834	-		PFLU_RS04485	0.81	+1.1
1,006,834	-		PFLU_RS04485	0.81	-0.3
1,006,885	+		PFLU_RS04485	0.89	+0.8
1,006,885	+		PFLU_RS04485	0.89	+0.6
1,006,885	+		PFLU_RS04485	0.89	+0.4
1,006,886	-		PFLU_RS04485	0.89	+0.5
1,006,886	-		PFLU_RS04485	0.89	+0.5
1,006,903	+				+1.5
1,006,990	+				-0.0
1,006,991	-				-0.2
1,006,995	+				+0.8
1,006,996	-				+1.5
1,006,996	-				+2.7
1,006,996	-				-3.0
1,007,000	+				-0.1
1,007,001	-				+0.6
1,007,001	-				+0.6
1,007,018	+				-0.9
1,007,018	+				+0.6
1,007,018	+				-0.0
1,007,018	+				+0.5
1,007,019	-				+0.9
1,007,020	+				+0.5
1,007,020	+				+0.4
1,007,020	+				-1.9
1,007,021	-				-1.8
1,007,021	-				+0.1
1,007,028	+				-2.4
1,007,028	+				+1.4
1,007,028	+				+0.9
1,007,028	+				-2.3
1,007,028	+				+0.6
1,007,028	+				+1.0
1,007,028	+				-2.6
1,007,028	+				+1.7
1,007,028	+				+0.1
1,007,028	+				-1.2
1,007,029	-				-0.5
1,007,029	-				-1.0
1,007,029	-				+1.0
1,007,029	-				-0.7
1,007,029	-				+1.7
1,007,029	-				+0.2
1,007,029	-				-3.2
1,007,029	-				+0.3
1,007,029	-				-0.5
1,007,029	-				-1.6
1,007,029	-				-0.4
1,007,031	+				+0.7
1,007,031	+				+0.0
1,007,031	+				-3.2
1,007,031	+				+1.0
1,007,031	+				+1.9
1,007,031	+				-1.2
1,007,031	+				+0.7
1,007,031	+				-0.6
1,007,032	-				+1.5
1,007,032	-				-0.1
1,007,032	-				-3.5
1,007,032	-				+1.3
1,007,032	-				-1.2
1,007,032	-				-0.7
1,007,032	-				+0.9
1,007,036	+				+0.6
1,007,036	+				-1.2
1,007,037	-				-0.5
1,007,044	+				+1.1
1,007,045	-				-0.0
1,007,073	+				-0.9
1,007,073	+				+2.2
1,007,074	-				+1.1
1,007,139	+				+1.7
1,007,173	+				+0.5
1,007,174	-				-1.1
1,007,174	-				-1.3
1,007,174	-				+0.6
1,007,174	-				+0.2
1,007,245	-		PFLU_RS04490	0.23	-0.1
1,007,245	-		PFLU_RS04490	0.23	-1.3
1,007,333	-		PFLU_RS04490	0.38	+1.2
1,007,599	+		PFLU_RS04490	0.86	+0.6
1,007,599	+		PFLU_RS04490	0.86	-2.7
1,007,599	+		PFLU_RS04490	0.86	-0.2
1,007,599	+		PFLU_RS04490	0.86	+1.9
1,007,599	+		PFLU_RS04490	0.86	+0.1
1,007,599	+		PFLU_RS04490	0.86	+0.8
1,007,599	+		PFLU_RS04490	0.86	+0.9
1,007,600	-		PFLU_RS04490	0.86	+1.6
1,007,600	-		PFLU_RS04490	0.86	+1.6
1,007,600	-		PFLU_RS04490	0.86	+0.8
1,007,600	-		PFLU_RS04490	0.86	-0.0
1,007,600	-		PFLU_RS04490	0.86	-0.6
1,007,623	+				-1.7
1,007,623	+				-2.3
1,007,623	+				-1.7
1,007,623	+				+0.3
1,007,623	+				+0.4
1,007,623	+				-0.7
1,007,624	-				-0.8
1,007,624	-				-2.3
1,007,624	-				-1.5
1,007,624	-				+1.2
1,007,624	-				+2.1
1,007,624	-				-0.7
1,007,624	-				+0.3
1,007,624	-				-1.3
1,007,624	-				+1.1
1,007,624	-				+2.0
1,007,624	-				-0.4
1,007,632	+				+0.3
1,007,632	+				+0.7
1,007,633	-				+0.4
1,007,656	+				+1.2
1,007,656	+				+1.4
1,007,656	+				+1.3
1,007,656	+				+0.3
1,007,657	-				+0.5
1,007,657	-				+0.1
1,007,674	+				-1.8
1,007,674	+				+1.3
1,007,674	+				+0.1
1,007,674	+				-0.9
1,007,674	+				+0.9
1,007,674	+				+0.2
1,007,674	+				-0.1
1,007,674	+				-0.2
1,007,674	+				+2.4
1,007,674	+				-0.6
1,007,674	+				-0.4
1,007,674	+				-0.6
1,007,674	+				+0.2
1,007,674	+				-2.6
1,007,674	+				-1.5
1,007,674	+				+0.4
1,007,674	+				-0.1
1,007,674	+				-1.3
1,007,674	+				+0.3
1,007,674	+				+0.5
1,007,674	+				-1.9
1,007,674	+				-2.1
1,007,674	+				-1.3
1,007,674	+				+0.1
1,007,675	-				-0.3
1,007,675	-				-0.5
1,007,675	-				-0.2
1,007,675	-				+0.1
1,007,675	-				-0.3
1,007,675	-				-1.1
1,007,675	-				-2.7
1,007,675	-				+0.1
1,007,675	-				-0.3
1,007,675	-				-1.8
1,007,675	-				+1.2
1,007,675	-				+1.4
1,007,675	-				+0.5
1,007,675	-				-0.4
1,007,675	-				-1.8
1,007,675	-				-0.2
1,007,821	+		PFLU_RS04495	0.30	+1.5
1,007,821	+		PFLU_RS04495	0.30	-1.9
1,007,821	+		PFLU_RS04495	0.30	-0.0
1,007,821	+		PFLU_RS04495	0.30	+0.8
1,007,821	+		PFLU_RS04495	0.30	-0.9
1,007,821	+		PFLU_RS04495	0.30	+0.5
1,007,821	+		PFLU_RS04495	0.30	+0.1
1,007,821	+		PFLU_RS04495	0.30	-1.5
1,007,821	+		PFLU_RS04495	0.30	-2.0
1,007,821	+		PFLU_RS04495	0.30	-0.0
1,007,821	+		PFLU_RS04495	0.30	+0.7
1,007,821	+		PFLU_RS04495	0.30	-0.6
1,007,821	+		PFLU_RS04495	0.30	-0.0
1,007,821	+		PFLU_RS04495	0.30	-1.9
1,007,821	+		PFLU_RS04495	0.30	+0.6
1,007,821	+		PFLU_RS04495	0.30	+1.4
1,007,821	+		PFLU_RS04495	0.30	+0.7
1,007,821	+		PFLU_RS04495	0.30	-1.7
1,007,821	+		PFLU_RS04495	0.30	-0.4
1,007,821	+		PFLU_RS04495	0.30	-2.0
1,007,821	+		PFLU_RS04495	0.30	-0.8
1,007,821	+		PFLU_RS04495	0.30	+1.2
1,007,821	+		PFLU_RS04495	0.30	-2.2
1,007,821	+		PFLU_RS04495	0.30	-0.3
1,007,821	+		PFLU_RS04495	0.30	+0.6
1,007,821	+		PFLU_RS04495	0.30	+0.1
1,007,821	+		PFLU_RS04495	0.30	+0.6
1,007,822	-		PFLU_RS04495	0.30	-0.4
1,007,822	-		PFLU_RS04495	0.30	+1.0
1,007,822	-		PFLU_RS04495	0.30	+0.4
1,007,822	-		PFLU_RS04495	0.30	-0.8
1,007,822	-		PFLU_RS04495	0.30	+1.2
1,007,822	-		PFLU_RS04495	0.30	-0.9
1,007,822	-		PFLU_RS04495	0.30	+1.3
1,007,822	-		PFLU_RS04495	0.30	-1.2
1,007,822	-		PFLU_RS04495	0.30	+0.6
1,007,822	-		PFLU_RS04495	0.30	-1.1
1,007,822	-		PFLU_RS04495	0.30	+0.6
1,007,822	-		PFLU_RS04495	0.30	-1.1
1,007,822	-		PFLU_RS04495	0.30	-0.5
1,007,822	-		PFLU_RS04495	0.30	-0.3
1,007,822	-		PFLU_RS04495	0.30	+2.1
1,007,822	-		PFLU_RS04495	0.30	-0.4
1,007,822	-		PFLU_RS04495	0.30	+0.1
1,007,822	-		PFLU_RS04495	0.30	+2.6
1,007,822	-		PFLU_RS04495	0.30	-0.1
1,007,822	-		PFLU_RS04495	0.30	-1.2
1,007,822	-		PFLU_RS04495	0.30	+1.2
1,007,822	-		PFLU_RS04495	0.30	+0.7
1,007,822	-		PFLU_RS04495	0.30	+0.2
1,007,822	-		PFLU_RS04495	0.30	-0.5
1,007,822	-		PFLU_RS04495	0.30	+2.6
1,007,853	+		PFLU_RS04495	0.37	+0.4
1,007,984	+		PFLU_RS04495	0.65	-0.6
1,007,984	+		PFLU_RS04495	0.65	-0.9
1,007,984	+		PFLU_RS04495	0.65	+0.4
1,007,984	+		PFLU_RS04495	0.65	-0.2
1,007,984	+		PFLU_RS04495	0.65	+0.7
1,007,985	-		PFLU_RS04495	0.65	+1.6
1,007,985	-		PFLU_RS04495	0.65	+1.8
1,007,985	-		PFLU_RS04495	0.65	+0.7
1,007,985	-		PFLU_RS04495	0.65	+0.5
1,007,985	-		PFLU_RS04495	0.65	+0.2
1,008,115	+				+1.3
1,008,116	-				+0.4
1,008,150	+				+0.7
1,008,150	+				-1.6
1,008,150	+				-2.0
1,008,150	+				-1.1
1,008,150	+				-0.9
1,008,150	+				-1.8
1,008,150	+				+1.3
1,008,150	+				-0.4
1,008,150	+				-0.0
1,008,150	+				+0.7
1,008,150	+				+0.1
1,008,151	-				+0.9
1,008,151	-				+0.5
1,008,151	-				+0.0
1,008,151	-				+3.0
1,008,151	-				+0.4
1,008,151	-				-1.5
1,008,151	-				+0.3
1,008,233	-		PFLU_RS04500	0.10	-0.0
1,008,342	+		PFLU_RS04500	0.33	+0.7
1,008,342	+		PFLU_RS04500	0.33	+0.9
1,008,343	-		PFLU_RS04500	0.33	-1.3
1,008,507	+		PFLU_RS04500	0.67	+0.7
1,008,507	+		PFLU_RS04500	0.67	-0.6
1,008,508	-		PFLU_RS04500	0.67	+2.0
1,008,508	-		PFLU_RS04500	0.67	+1.2
1,008,508	-		PFLU_RS04500	0.67	-0.7
1,008,508	-		PFLU_RS04500	0.67	+0.5
1,008,508	-		PFLU_RS04500	0.67	-1.9
1,008,540	+		PFLU_RS04500	0.73	+0.1
1,008,540	+		PFLU_RS04500	0.73	-0.6
1,008,541	-		PFLU_RS04500	0.74	+1.4
1,008,594	+		PFLU_RS04500	0.85	+1.7
1,008,594	+		PFLU_RS04500	0.85	-1.0
1,008,594	+		PFLU_RS04500	0.85	+2.0
1,008,594	+		PFLU_RS04500	0.85	-0.1
1,008,594	+		PFLU_RS04500	0.85	-0.3
1,008,594	+		PFLU_RS04500	0.85	+1.0
1,008,594	+		PFLU_RS04500	0.85	+1.1
1,008,594	+		PFLU_RS04500	0.85	+1.6
1,008,594	+		PFLU_RS04500	0.85	+0.1
1,008,594	+		PFLU_RS04500	0.85	-0.9
1,008,594	+		PFLU_RS04500	0.85	-0.6
1,008,594	+		PFLU_RS04500	0.85	+0.8
1,008,594	+		PFLU_RS04500	0.85	-2.0
1,008,594	+		PFLU_RS04500	0.85	-0.4
1,008,594	+		PFLU_RS04500	0.85	-0.3
1,008,594	+		PFLU_RS04500	0.85	-0.7
1,008,594	+		PFLU_RS04500	0.85	-1.3
1,008,594	+		PFLU_RS04500	0.85	+0.3
1,008,594	+		PFLU_RS04500	0.85	-0.2
1,008,594	+		PFLU_RS04500	0.85	+0.3
1,008,594	+		PFLU_RS04500	0.85	-1.6
1,008,594	+		PFLU_RS04500	0.85	+0.4
1,008,594	+		PFLU_RS04500	0.85	+1.9
1,008,594	+		PFLU_RS04500	0.85	+1.3
1,008,594	+		PFLU_RS04500	0.85	-0.5
1,008,594	+		PFLU_RS04500	0.85	+1.4
1,008,594	+		PFLU_RS04500	0.85	+0.4
1,008,594	+		PFLU_RS04500	0.85	+0.7
1,008,594	+		PFLU_RS04500	0.85	-2.1
1,008,595	-		PFLU_RS04500	0.85	+0.5
1,008,595	-		PFLU_RS04500	0.85	-0.0
1,008,595	-		PFLU_RS04500	0.85	-1.6
1,008,595	-		PFLU_RS04500	0.85	-1.2
1,008,595	-		PFLU_RS04500	0.85	-0.6
1,008,595	-		PFLU_RS04500	0.85	+0.7
1,008,595	-		PFLU_RS04500	0.85	+0.5
1,008,595	-		PFLU_RS04500	0.85	+0.1
1,008,595	-		PFLU_RS04500	0.85	+1.4
1,008,595	-		PFLU_RS04500	0.85	-1.2
1,008,595	-		PFLU_RS04500	0.85	+0.1
1,008,595	-		PFLU_RS04500	0.85	+0.9
1,008,595	-		PFLU_RS04500	0.85	-1.1
1,008,595	-		PFLU_RS04500	0.85	-0.9
1,008,595	-		PFLU_RS04500	0.85	+0.4
1,008,595	-		PFLU_RS04500	0.85	+1.0
1,008,595	-		PFLU_RS04500	0.85	+1.4
1,008,595	-		PFLU_RS04500	0.85	+2.2
1,008,595	-		PFLU_RS04500	0.85	-0.8
1,008,595	-		PFLU_RS04500	0.85	-1.6
1,008,595	-		PFLU_RS04500	0.85	-0.0
1,008,595	-		PFLU_RS04500	0.85	+0.4
1,008,612	+		PFLU_RS04500	0.88	+0.3
1,008,612	+		PFLU_RS04500	0.88	+0.3
1,008,612	+		PFLU_RS04500	0.88	-1.3
1,008,612	+		PFLU_RS04500	0.88	-0.0
1,008,613	-		PFLU_RS04500	0.88	+0.7
1,008,613	-		PFLU_RS04500	0.88	+0.1
1,008,613	-		PFLU_RS04500	0.88	-0.3
1,008,626	+				-0.8
1,008,626	+				-0.8
1,008,626	+				+1.4
1,008,626	+				-1.9
1,008,626	+				-1.3
1,008,626	+				-0.4
1,008,626	+				+0.1
1,008,626	+				-0.9
1,008,627	-				-1.6
1,008,627	-				-0.4
1,008,627	-				+0.6
1,008,627	-				+1.4
1,008,627	-				+0.1
1,008,627	-				-0.0
1,008,627	-				+0.6
1,008,645	-				+0.4
1,008,686	+				-2.9
1,008,686	+				-1.4
1,008,687	-				-0.8
1,008,687	-				+0.6
1,008,687	-				-0.5
1,008,687	-				+0.5
1,008,687	-				-0.1
1,008,687	-				+0.6
1,008,687	-				+1.2
1,008,755	+				+2.1
1,008,755	+				+1.4
1,008,756	-				-1.7
1,008,756	-				+1.6
1,008,756	-				-0.5
1,008,756	-				-0.2
1,008,756	-				-0.1
1,008,756	-				-0.6
1,008,773	+				-1.5
1,008,773	+				-0.1
1,008,773	+				-2.7
1,008,773	+				+0.2
1,008,774	-				+0.5
1,008,774	-				+2.0
1,008,774	-				-2.2
1,008,774	-				-1.6
1,008,774	-				-0.8
1,008,811	-				-0.1
1,008,811	-				+0.2
1,008,811	-				-0.7
1,008,811	-				-1.8
1,008,811	-				-1.5
1,009,054	+		PFLU_RS04505	0.89	+0.7
1,009,054	+		PFLU_RS04505	0.89	-2.3
1,009,054	+		PFLU_RS04505	0.89	-0.5
1,009,054	+		PFLU_RS04505	0.89	-0.3
1,009,054	+		PFLU_RS04505	0.89	-2.2
1,009,054	+		PFLU_RS04505	0.89	+0.5
1,009,054	+		PFLU_RS04505	0.89	+0.7
1,009,055	-		PFLU_RS04505	0.89	-0.3
1,009,055	-		PFLU_RS04505	0.89	-1.6
1,009,142	-				+1.3
1,009,142	-				+2.1