Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01400

Experiment: NAG (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01390 and PFLU_RS01395 are separated by 66 nucleotidesPFLU_RS01395 and PFLU_RS01400 are separated by 26 nucleotidesPFLU_RS01400 and PFLU_RS01405 overlap by 4 nucleotides PFLU_RS01390: PFLU_RS01390 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 308,454 to 309,290 _RS01390 PFLU_RS01395: PFLU_RS01395 - thioesterase, at 309,357 to 309,812 _RS01395 PFLU_RS01400: PFLU_RS01400 - sigma-54-dependent Fis family transcriptional regulator, at 309,839 to 311,215 _RS01400 PFLU_RS01405: PFLU_RS01405 - sensor histidine kinase, at 311,212 to 313,020 _RS01405 Position (kb) 309 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 308.847 kb on + strand, within PFLU_RS01390at 308.848 kb on - strand, within PFLU_RS01390at 309.038 kb on + strand, within PFLU_RS01390at 309.038 kb on + strand, within PFLU_RS01390at 309.038 kb on + strand, within PFLU_RS01390at 309.039 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.091 kb on - strand, within PFLU_RS01390at 309.288 kb on + strandat 309.288 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.572 kb on + strand, within PFLU_RS01395at 309.573 kb on - strand, within PFLU_RS01395at 309.647 kb on - strand, within PFLU_RS01395at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.138 kb on + strand, within PFLU_RS01400at 310.138 kb on + strand, within PFLU_RS01400at 310.138 kb on + strand, within PFLU_RS01400at 310.138 kb on + strand, within PFLU_RS01400at 310.138 kb on + strand, within PFLU_RS01400at 310.139 kb on - strand, within PFLU_RS01400at 310.139 kb on - strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.911 kb on + strand, within PFLU_RS01400at 311.209 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.394 kb on + strand, within PFLU_RS01405at 311.394 kb on + strand, within PFLU_RS01405at 311.395 kb on - strand, within PFLU_RS01405at 311.395 kb on - strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.459 kb on + strand, within PFLU_RS01405at 311.459 kb on + strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 312.101 kb on + strand, within PFLU_RS01405at 312.101 kb on + strand, within PFLU_RS01405at 312.102 kb on - strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C); with MOPS
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308,847 + PFLU_RS01390 0.47 +1.7
308,848 - PFLU_RS01390 0.47 +1.9
309,038 + PFLU_RS01390 0.70 +0.9
309,038 + PFLU_RS01390 0.70 -0.3
309,038 + PFLU_RS01390 0.70 -0.7
309,039 - PFLU_RS01390 0.70 +1.2
309,041 - PFLU_RS01390 0.70 +0.0
309,041 - PFLU_RS01390 0.70 +1.6
309,041 - PFLU_RS01390 0.70 +1.8
309,041 - PFLU_RS01390 0.70 -1.6
309,041 - PFLU_RS01390 0.70 +0.0
309,091 - PFLU_RS01390 0.76 +2.3
309,288 + -1.2
309,288 + -0.8
309,373 + +0.7
309,373 + -0.7
309,374 - -1.3
309,374 - -1.0
309,374 - +1.0
309,374 - -0.1
309,374 - +0.6
309,463 + PFLU_RS01395 0.23 -1.3
309,463 + PFLU_RS01395 0.23 -0.2
309,463 + PFLU_RS01395 0.23 +0.6
309,463 + PFLU_RS01395 0.23 +0.5
309,463 + PFLU_RS01395 0.23 +0.2
309,463 + PFLU_RS01395 0.23 +0.8
309,464 - PFLU_RS01395 0.23 +1.1
309,464 - PFLU_RS01395 0.23 +0.6
309,464 - PFLU_RS01395 0.23 +0.7
309,464 - PFLU_RS01395 0.23 +0.9
309,464 - PFLU_RS01395 0.23 -0.5
309,464 - PFLU_RS01395 0.23 -0.2
309,464 - PFLU_RS01395 0.23 -0.1
309,464 - PFLU_RS01395 0.23 +1.9
309,572 + PFLU_RS01395 0.47 +0.2
309,573 - PFLU_RS01395 0.47 -2.8
309,647 - PFLU_RS01395 0.64 +1.7
310,121 + PFLU_RS01400 0.20 +0.6
310,121 + PFLU_RS01400 0.20 +0.2
310,121 + PFLU_RS01400 0.20 -2.1
310,121 + PFLU_RS01400 0.20 +0.1
310,121 + PFLU_RS01400 0.20 +1.6
310,121 + PFLU_RS01400 0.20 +0.7
310,121 + PFLU_RS01400 0.20 +1.0
310,121 + PFLU_RS01400 0.20 +0.9
310,121 + PFLU_RS01400 0.20 -0.5
310,121 + PFLU_RS01400 0.20 -0.4
310,122 - PFLU_RS01400 0.21 -0.5
310,122 - PFLU_RS01400 0.21 +0.6
310,122 - PFLU_RS01400 0.21 -2.3
310,122 - PFLU_RS01400 0.21 +0.1
310,122 - PFLU_RS01400 0.21 -1.0
310,122 - PFLU_RS01400 0.21 -1.4
310,122 - PFLU_RS01400 0.21 +0.3
310,122 - PFLU_RS01400 0.21 +1.2
310,122 - PFLU_RS01400 0.21 -1.0
310,122 - PFLU_RS01400 0.21 -0.5
310,122 - PFLU_RS01400 0.21 +0.2
310,122 - PFLU_RS01400 0.21 -0.2
310,122 - PFLU_RS01400 0.21 -1.0
310,122 - PFLU_RS01400 0.21 +0.1
310,122 - PFLU_RS01400 0.21 +1.0
310,122 - PFLU_RS01400 0.21 -0.8
310,122 - PFLU_RS01400 0.21 -0.4
310,138 + PFLU_RS01400 0.22 +0.0
310,138 + PFLU_RS01400 0.22 -0.4
310,138 + PFLU_RS01400 0.22 +0.0
310,138 + PFLU_RS01400 0.22 +0.7
310,138 + PFLU_RS01400 0.22 +1.2
310,139 - PFLU_RS01400 0.22 -1.4
310,139 - PFLU_RS01400 0.22 +1.8
310,299 + PFLU_RS01400 0.33 -2.1
310,299 + PFLU_RS01400 0.33 +0.5
310,299 + PFLU_RS01400 0.33 -0.0
310,299 + PFLU_RS01400 0.33 -0.0
310,299 + PFLU_RS01400 0.33 -1.4
310,299 + PFLU_RS01400 0.33 -1.9
310,299 + PFLU_RS01400 0.33 -1.0
310,300 - PFLU_RS01400 0.33 -0.7
310,300 - PFLU_RS01400 0.33 -0.0
310,300 - PFLU_RS01400 0.33 -0.9
310,300 - PFLU_RS01400 0.33 +1.0
310,300 - PFLU_RS01400 0.33 -0.3
310,300 - PFLU_RS01400 0.33 +0.6
310,300 - PFLU_RS01400 0.33 +1.1
310,300 - PFLU_RS01400 0.33 +1.2
310,300 - PFLU_RS01400 0.33 -0.6
310,300 - PFLU_RS01400 0.33 +0.2
310,448 + PFLU_RS01400 0.44 -1.3
310,448 + PFLU_RS01400 0.44 +1.4
310,448 + PFLU_RS01400 0.44 -2.6
310,448 + PFLU_RS01400 0.44 -0.1
310,448 + PFLU_RS01400 0.44 -2.0
310,448 + PFLU_RS01400 0.44 +0.9
310,448 + PFLU_RS01400 0.44 +0.8
310,448 + PFLU_RS01400 0.44 -1.6
310,448 + PFLU_RS01400 0.44 +0.5
310,449 - PFLU_RS01400 0.44 +0.7
310,449 - PFLU_RS01400 0.44 -1.2
310,449 - PFLU_RS01400 0.44 +0.4
310,449 - PFLU_RS01400 0.44 -3.1
310,449 - PFLU_RS01400 0.44 -0.9
310,449 - PFLU_RS01400 0.44 +1.1
310,449 - PFLU_RS01400 0.44 -0.9
310,911 + PFLU_RS01400 0.78 +1.0
311,209 + +0.5
311,215 + +1.1
311,215 + -0.1
311,215 + +0.4
311,215 + -1.4
311,215 + +0.7
311,215 + -0.5
311,215 + -0.3
311,215 + -1.0
311,215 + -0.1
311,215 + -0.6
311,215 + +0.5
311,215 + -3.1
311,215 + -1.6
311,215 + +0.4
311,215 + +0.5
311,216 - -3.4
311,216 - +0.1
311,216 - -1.8
311,216 - -1.3
311,216 - -0.5
311,216 - -0.5
311,216 - +2.3
311,216 - +0.2
311,216 - -1.4
311,216 - -0.7
311,216 - -0.4
311,216 - -0.6
311,216 - -1.0
311,216 - +0.4
311,394 + PFLU_RS01405 0.10 +0.6
311,394 + PFLU_RS01405 0.10 +0.9
311,395 - PFLU_RS01405 0.10 +1.6
311,395 - PFLU_RS01405 0.10 +0.1
311,396 + PFLU_RS01405 0.10 -1.4
311,396 + PFLU_RS01405 0.10 +0.6
311,396 + PFLU_RS01405 0.10 +1.1
311,396 + PFLU_RS01405 0.10 +0.6
311,396 + PFLU_RS01405 0.10 +1.1
311,396 + PFLU_RS01405 0.10 +1.7
311,397 - PFLU_RS01405 0.10 -3.1
311,397 - PFLU_RS01405 0.10 -1.2
311,397 - PFLU_RS01405 0.10 +1.4
311,397 - PFLU_RS01405 0.10 -0.3
311,397 - PFLU_RS01405 0.10 +1.3
311,459 + PFLU_RS01405 0.14 +0.5
311,459 + PFLU_RS01405 0.14 -1.2
311,460 - PFLU_RS01405 0.14 -0.1
311,460 - PFLU_RS01405 0.14 -2.3
311,460 - PFLU_RS01405 0.14 -0.8
311,460 - PFLU_RS01405 0.14 -0.6
312,101 + PFLU_RS01405 0.49 +2.6
312,101 + PFLU_RS01405 0.49 +1.1
312,102 - PFLU_RS01405 0.49 -1.6
312,180 + PFLU_RS01405 0.54 -0.2
312,180 + PFLU_RS01405 0.54 -0.1
312,180 + PFLU_RS01405 0.54 -0.1
312,180 + PFLU_RS01405 0.54 +0.8
312,180 + PFLU_RS01405 0.54 +0.0
312,181 - PFLU_RS01405 0.54 +0.8
312,181 - PFLU_RS01405 0.54 +0.1
312,181 - PFLU_RS01405 0.54 -0.9
312,181 - PFLU_RS01405 0.54 +0.7
312,181 - PFLU_RS01405 0.54 -1.0

Or see this region's nucleotide sequence