Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00475 and PS417_00480 are separated by 103 nucleotides PS417_00480 and PS417_00485 overlap by 4 nucleotides PS417_00485 and PS417_00490 are separated by 1 nucleotides PS417_00490 and PS417_00495 overlap by 4 nucleotides
PS417_00475: PS417_00475 - membrane protein, at 94,106 to 95,335
_00475
PS417_00480: PS417_00480 - hypothetical protein, at 95,439 to 96,050
_00480
PS417_00485: PS417_00485 - ABC transporter permease, at 96,047 to 96,985
_00485
PS417_00490: PS417_00490 - iron ABC transporter ATP-binding protein, at 96,987 to 97,790
_00490
PS417_00495: PS417_00495 - ABC transporter permease, at 97,787 to 98,935
_00495
Position (kb) 96
97 Strain fitness (log2 ratio) -1
0
1 at 95.207 kb on + strand, within PS417_00475 at 95.207 kb on + strand, within PS417_00475 at 95.207 kb on + strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.223 kb on - strand at 95.318 kb on + strand at 95.319 kb on - strand at 95.374 kb on + strand at 95.375 kb on - strand at 95.375 kb on - strand at 95.698 kb on + strand, within PS417_00480 at 95.699 kb on - strand, within PS417_00480 at 95.717 kb on + strand, within PS417_00480 at 95.768 kb on + strand, within PS417_00480 at 95.821 kb on + strand, within PS417_00480 at 96.018 kb on + strand at 96.019 kb on - strand at 96.030 kb on + strand at 96.763 kb on + strand, within PS417_00485 at 96.867 kb on + strand, within PS417_00485 at 96.990 kb on + strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.999 kb on + strand at 97.150 kb on + strand, within PS417_00490 at 97.151 kb on - strand, within PS417_00490 at 97.354 kb on + strand, within PS417_00490 at 97.355 kb on - strand, within PS417_00490 at 97.623 kb on - strand, within PS417_00490 at 97.684 kb on + strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.779 kb on + strand at 97.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 95,207 + PS417_00475 0.90 +0.2 95,207 + PS417_00475 0.90 -0.5 95,207 + PS417_00475 0.90 -0.2 95,208 - PS417_00475 0.90 -0.3 95,208 - PS417_00475 0.90 +0.5 95,208 - PS417_00475 0.90 -1.0 95,223 - -0.0 95,318 + -0.5 95,319 - -0.4 95,374 + +0.4 95,375 - +0.3 95,375 - -0.2 95,698 + PS417_00480 0.42 -0.5 95,699 - PS417_00480 0.42 +1.1 95,717 + PS417_00480 0.45 +0.9 95,768 + PS417_00480 0.54 -0.0 95,821 + PS417_00480 0.62 +0.1 96,018 + +0.5 96,019 - -0.4 96,030 + +0.8 96,763 + PS417_00485 0.76 -0.8 96,867 + PS417_00485 0.87 -1.1 96,990 + +0.2 96,991 - +0.0 96,991 - +0.9 96,991 - +0.0 96,999 + -1.5 97,150 + PS417_00490 0.20 +0.7 97,151 - PS417_00490 0.20 +0.0 97,354 + PS417_00490 0.46 -0.1 97,355 - PS417_00490 0.46 -0.2 97,623 - PS417_00490 0.79 +0.1 97,684 + PS417_00490 0.87 +0.1 97,685 - PS417_00490 0.87 +0.1 97,685 - PS417_00490 0.87 +0.7 97,685 - PS417_00490 0.87 -0.4 97,685 - PS417_00490 0.87 +1.0 97,779 + +0.4 97,780 - -0.8
Or see this region's nucleotide sequence