Strain Fitness in Pseudomonas simiae WCS417 around PS417_13645

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13640 and PS417_13645 are separated by 30 nucleotidesPS417_13645 and PS417_13650 are separated by 22 nucleotides PS417_13640: PS417_13640 - ribose ABC transporter permease, at 3,001,827 to 3,002,804 _13640 PS417_13645: PS417_13645 - ABC transporter, at 3,002,835 to 3,003,767 _13645 PS417_13650: PS417_13650 - LacI family transcriptional regulator, at 3,003,790 to 3,004,791 _13650 Position (kb) 3002 3003 3004Strain fitness (log2 ratio) -1 0 1at 3002.418 kb on + strand, within PS417_13640at 3002.545 kb on + strand, within PS417_13640at 3002.730 kb on + strandat 3003.034 kb on - strand, within PS417_13645at 3003.065 kb on + strand, within PS417_13645at 3003.249 kb on + strand, within PS417_13645at 3003.598 kb on + strand, within PS417_13645at 3003.738 kb on - strandat 3003.742 kb on - strandat 3003.742 kb on - strandat 3003.742 kb on - strandat 3003.742 kb on - strandat 3003.759 kb on - strandat 3003.923 kb on - strand, within PS417_13650at 3003.923 kb on - strand, within PS417_13650at 3003.969 kb on + strand, within PS417_13650at 3004.007 kb on - strand, within PS417_13650at 3004.761 kb on + strandat 3004.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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3,002,418 + PS417_13640 0.60 -0.2
3,002,545 + PS417_13640 0.73 +0.3
3,002,730 + +0.7
3,003,034 - PS417_13645 0.21 -0.7
3,003,065 + PS417_13645 0.25 -0.5
3,003,249 + PS417_13645 0.44 -0.7
3,003,598 + PS417_13645 0.82 -1.7
3,003,738 - +0.5
3,003,742 - -0.9
3,003,742 - +0.3
3,003,742 - +0.6
3,003,742 - -0.5
3,003,759 - +0.5
3,003,923 - PS417_13650 0.13 +1.1
3,003,923 - PS417_13650 0.13 +0.3
3,003,969 + PS417_13650 0.18 -0.3
3,004,007 - PS417_13650 0.22 -0.2
3,004,761 + +0.3
3,004,762 - -0.2

Or see this region's nucleotide sequence