Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01100 and PS417_01105 overlap by 1 nucleotides PS417_01105 and PS417_01110 are separated by 175 nucleotides PS417_01110 and PS417_01115 are separated by 165 nucleotides
PS417_01100: PS417_01100 - amino acid ABC transporter permease, at 241,059 to 241,724
_01100
PS417_01105: PS417_01105 - cystine transporter subunit, at 241,724 to 242,518
_01105
PS417_01110: PS417_01110 - cysteine desulfhydrase, at 242,694 to 243,686
_01110
PS417_01115: PS417_01115 - serine acetyltransferase, at 243,852 to 244,778
_01115
Position (kb) 242
243
244 Strain fitness (log2 ratio) -1
0
1
2 at 241.749 kb on + strand at 241.995 kb on + strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.044 kb on - strand, within PS417_01105 at 242.371 kb on - strand, within PS417_01105 at 242.512 kb on + strand at 242.513 kb on - strand at 242.539 kb on - strand at 242.615 kb on + strand at 242.617 kb on + strand at 242.617 kb on + strand at 242.618 kb on - strand at 242.710 kb on + strand at 242.911 kb on + strand, within PS417_01110 at 242.911 kb on + strand, within PS417_01110 at 243.178 kb on - strand, within PS417_01110 at 243.181 kb on + strand, within PS417_01110 at 243.182 kb on - strand, within PS417_01110 at 243.227 kb on - strand, within PS417_01110 at 243.358 kb on + strand, within PS417_01110 at 243.358 kb on + strand, within PS417_01110 at 243.474 kb on + strand, within PS417_01110 at 243.517 kb on + strand, within PS417_01110 at 243.518 kb on - strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.581 kb on - strand, within PS417_01110 at 243.581 kb on - strand, within PS417_01110 at 243.691 kb on - strand at 243.704 kb on - strand at 243.704 kb on - strand at 243.707 kb on + strand at 243.708 kb on - strand at 243.708 kb on - strand at 243.720 kb on + strand at 243.721 kb on - strand at 243.818 kb on + strand at 243.819 kb on - strand at 243.849 kb on - strand at 243.881 kb on - strand at 244.075 kb on - strand, within PS417_01115 at 244.531 kb on - strand, within PS417_01115 at 244.635 kb on + strand, within PS417_01115
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 241,749 + -0.2 241,995 + PS417_01105 0.34 -0.8 241,996 - PS417_01105 0.34 -0.5 241,996 - PS417_01105 0.34 +0.1 241,996 - PS417_01105 0.34 -0.0 242,043 + PS417_01105 0.40 +0.0 242,043 + PS417_01105 0.40 +0.3 242,043 + PS417_01105 0.40 +0.0 242,044 - PS417_01105 0.40 +0.1 242,371 - PS417_01105 0.81 -0.7 242,512 + +0.0 242,513 - -0.2 242,539 - +0.1 242,615 + +0.6 242,617 + +0.2 242,617 + -0.3 242,618 - +0.0 242,710 + +0.1 242,911 + PS417_01110 0.22 -0.1 242,911 + PS417_01110 0.22 -0.7 243,178 - PS417_01110 0.49 +0.2 243,181 + PS417_01110 0.49 +0.3 243,182 - PS417_01110 0.49 -0.2 243,227 - PS417_01110 0.54 -0.0 243,358 + PS417_01110 0.67 -0.0 243,358 + PS417_01110 0.67 +0.2 243,474 + PS417_01110 0.79 +1.9 243,517 + PS417_01110 0.83 +0.0 243,518 - PS417_01110 0.83 +0.5 243,580 + PS417_01110 0.89 -0.4 243,580 + PS417_01110 0.89 -0.1 243,580 + PS417_01110 0.89 +0.1 243,581 - PS417_01110 0.89 -0.8 243,581 - PS417_01110 0.89 -0.6 243,691 - -0.0 243,704 - +0.8 243,704 - -0.1 243,707 + -0.2 243,708 - +0.2 243,708 - +2.5 243,720 + +0.1 243,721 - -1.3 243,818 + -0.4 243,819 - -0.1 243,849 - -0.7 243,881 - -0.0 244,075 - PS417_01115 0.24 -0.1 244,531 - PS417_01115 0.73 -1.0 244,635 + PS417_01115 0.84 -1.2
Or see this region's nucleotide sequence