Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20330

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20320 and CA264_20325 are separated by 72 nucleotidesCA264_20325 and CA264_20330 are separated by 166 nucleotidesCA264_20330 and CA264_20335 are separated by 108 nucleotides CA264_20320: CA264_20320 - hypothetical protein, at 4,682,612 to 4,683,136 _20320 CA264_20325: CA264_20325 - cell envelope biogenesis protein OmpA, at 4,683,209 to 4,683,919 _20325 CA264_20330: CA264_20330 - hypothetical protein, at 4,684,086 to 4,684,658 _20330 CA264_20335: CA264_20335 - isoaspartyl peptidase/L-asparaginase, at 4,684,767 to 4,685,798 _20335 Position (kb) 4684 4685Strain fitness (log2 ratio) -2 -1 0 1at 4683.134 kb on + strandat 4683.203 kb on + strandat 4683.204 kb on - strandat 4683.207 kb on + strandat 4683.208 kb on - strandat 4683.208 kb on - strandat 4683.211 kb on - strandat 4683.284 kb on - strand, within CA264_20325at 4683.301 kb on + strand, within CA264_20325at 4683.347 kb on + strand, within CA264_20325at 4683.443 kb on - strand, within CA264_20325at 4683.479 kb on + strand, within CA264_20325at 4683.479 kb on + strand, within CA264_20325at 4683.486 kb on - strand, within CA264_20325at 4683.555 kb on - strand, within CA264_20325at 4683.565 kb on + strand, within CA264_20325at 4683.566 kb on - strand, within CA264_20325at 4683.586 kb on + strand, within CA264_20325at 4683.586 kb on + strand, within CA264_20325at 4683.603 kb on + strand, within CA264_20325at 4683.603 kb on + strand, within CA264_20325at 4683.627 kb on - strand, within CA264_20325at 4683.647 kb on - strand, within CA264_20325at 4683.838 kb on - strand, within CA264_20325at 4683.860 kb on + strandat 4683.860 kb on + strandat 4683.861 kb on - strandat 4683.861 kb on - strandat 4683.926 kb on + strandat 4683.934 kb on - strandat 4683.960 kb on + strandat 4683.961 kb on - strandat 4683.972 kb on - strandat 4684.099 kb on - strandat 4684.126 kb on + strandat 4684.190 kb on - strand, within CA264_20330at 4684.190 kb on - strand, within CA264_20330at 4684.261 kb on + strand, within CA264_20330at 4684.266 kb on + strand, within CA264_20330at 4684.266 kb on + strand, within CA264_20330at 4684.267 kb on - strand, within CA264_20330at 4684.267 kb on - strand, within CA264_20330at 4684.267 kb on - strand, within CA264_20330at 4684.269 kb on - strand, within CA264_20330at 4684.269 kb on - strand, within CA264_20330at 4684.269 kb on - strand, within CA264_20330at 4684.276 kb on + strand, within CA264_20330at 4684.376 kb on - strand, within CA264_20330at 4684.393 kb on + strand, within CA264_20330at 4684.394 kb on - strand, within CA264_20330at 4684.405 kb on + strand, within CA264_20330at 4684.427 kb on - strand, within CA264_20330at 4684.427 kb on - strand, within CA264_20330at 4684.445 kb on + strand, within CA264_20330at 4684.445 kb on + strand, within CA264_20330at 4684.501 kb on + strand, within CA264_20330at 4684.502 kb on - strand, within CA264_20330at 4684.502 kb on - strand, within CA264_20330at 4684.658 kb on + strandat 4684.659 kb on - strandat 4684.705 kb on + strandat 4684.705 kb on + strandat 4684.705 kb on + strandat 4684.706 kb on - strandat 4684.706 kb on - strandat 4684.710 kb on - strandat 4684.729 kb on + strandat 4684.729 kb on + strandat 4684.729 kb on + strandat 4684.730 kb on - strandat 4684.730 kb on - strandat 4684.740 kb on + strandat 4684.741 kb on - strandat 4684.756 kb on + strandat 4684.780 kb on + strandat 4684.847 kb on + strandat 4684.847 kb on + strandat 4684.848 kb on - strandat 4684.864 kb on + strandat 4684.960 kb on - strand, within CA264_20335at 4685.000 kb on - strand, within CA264_20335at 4685.006 kb on + strand, within CA264_20335at 4685.007 kb on - strand, within CA264_20335at 4685.007 kb on - strand, within CA264_20335at 4685.007 kb on - strand, within CA264_20335at 4685.011 kb on + strand, within CA264_20335at 4685.040 kb on - strand, within CA264_20335at 4685.141 kb on - strand, within CA264_20335at 4685.150 kb on + strand, within CA264_20335at 4685.151 kb on - strand, within CA264_20335at 4685.180 kb on + strand, within CA264_20335at 4685.421 kb on + strand, within CA264_20335at 4685.514 kb on + strand, within CA264_20335at 4685.562 kb on + strand, within CA264_20335at 4685.562 kb on + strand, within CA264_20335at 4685.563 kb on - strand, within CA264_20335at 4685.592 kb on - strand, within CA264_20335at 4685.610 kb on + strand, within CA264_20335at 4685.611 kb on - strand, within CA264_20335

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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4,683,134 + -0.4
4,683,203 + -2.1
4,683,204 - -0.1
4,683,207 + -0.4
4,683,208 - +0.1
4,683,208 - -0.3
4,683,211 - +0.1
4,683,284 - CA264_20325 0.11 +0.0
4,683,301 + CA264_20325 0.13 -1.0
4,683,347 + CA264_20325 0.19 +0.2
4,683,443 - CA264_20325 0.33 +1.0
4,683,479 + CA264_20325 0.38 -1.1
4,683,479 + CA264_20325 0.38 -1.8
4,683,486 - CA264_20325 0.39 -0.4
4,683,555 - CA264_20325 0.49 +1.7
4,683,565 + CA264_20325 0.50 +0.0
4,683,566 - CA264_20325 0.50 +0.5
4,683,586 + CA264_20325 0.53 -0.7
4,683,586 + CA264_20325 0.53 -0.8
4,683,603 + CA264_20325 0.55 -0.2
4,683,603 + CA264_20325 0.55 -1.3
4,683,627 - CA264_20325 0.59 -1.3
4,683,647 - CA264_20325 0.62 -0.5
4,683,838 - CA264_20325 0.88 -0.1
4,683,860 + -1.2
4,683,860 + -0.7
4,683,861 - -1.4
4,683,861 - +1.1
4,683,926 + -0.2
4,683,934 - -0.7
4,683,960 + -0.5
4,683,961 - +1.2
4,683,972 - +0.5
4,684,099 - -0.1
4,684,126 + +0.6
4,684,190 - CA264_20330 0.18 +0.2
4,684,190 - CA264_20330 0.18 +0.1
4,684,261 + CA264_20330 0.31 +0.3
4,684,266 + CA264_20330 0.31 +0.4
4,684,266 + CA264_20330 0.31 -0.7
4,684,267 - CA264_20330 0.32 +0.2
4,684,267 - CA264_20330 0.32 +0.1
4,684,267 - CA264_20330 0.32 +0.2
4,684,269 - CA264_20330 0.32 -0.8
4,684,269 - CA264_20330 0.32 -0.6
4,684,269 - CA264_20330 0.32 -0.1
4,684,276 + CA264_20330 0.33 +0.9
4,684,376 - CA264_20330 0.51 -0.3
4,684,393 + CA264_20330 0.54 +0.5
4,684,394 - CA264_20330 0.54 +0.4
4,684,405 + CA264_20330 0.56 -0.1
4,684,427 - CA264_20330 0.60 +1.1
4,684,427 - CA264_20330 0.60 -0.0
4,684,445 + CA264_20330 0.63 -0.4
4,684,445 + CA264_20330 0.63 -1.3
4,684,501 + CA264_20330 0.72 +0.5
4,684,502 - CA264_20330 0.73 +0.9
4,684,502 - CA264_20330 0.73 -0.6
4,684,658 + -0.9
4,684,659 - -0.8
4,684,705 + +0.1
4,684,705 + +0.2
4,684,705 + -0.4
4,684,706 - -0.4
4,684,706 - +0.2
4,684,710 - -0.5
4,684,729 + +0.1
4,684,729 + +0.1
4,684,729 + +0.2
4,684,730 - -0.3
4,684,730 - -0.9
4,684,740 + +0.3
4,684,741 - -0.8
4,684,756 + +0.3
4,684,780 + +0.1
4,684,847 + -0.0
4,684,847 + +0.1
4,684,848 - -0.1
4,684,864 + -0.2
4,684,960 - CA264_20335 0.19 +0.3
4,685,000 - CA264_20335 0.23 -0.2
4,685,006 + CA264_20335 0.23 -0.6
4,685,007 - CA264_20335 0.23 -0.5
4,685,007 - CA264_20335 0.23 -0.3
4,685,007 - CA264_20335 0.23 -0.2
4,685,011 + CA264_20335 0.24 -0.7
4,685,040 - CA264_20335 0.26 -0.1
4,685,141 - CA264_20335 0.36 -1.1
4,685,150 + CA264_20335 0.37 -0.2
4,685,151 - CA264_20335 0.37 +0.1
4,685,180 + CA264_20335 0.40 +0.3
4,685,421 + CA264_20335 0.63 +0.1
4,685,514 + CA264_20335 0.72 -0.7
4,685,562 + CA264_20335 0.77 -0.9
4,685,562 + CA264_20335 0.77 -0.3
4,685,563 - CA264_20335 0.77 +0.8
4,685,592 - CA264_20335 0.80 +0.4
4,685,610 + CA264_20335 0.82 -0.5
4,685,611 - CA264_20335 0.82 -0.0

Or see this region's nucleotide sequence