Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15675 and CA264_15680 are separated by 8 nucleotides CA264_15680 and CA264_15685 are separated by 3 nucleotides
CA264_15675: CA264_15675 - signal recognition particle-docking protein FtsY, at 3,659,657 to 3,660,616
_15675
CA264_15680: CA264_15680 - hypothetical protein, at 3,660,625 to 3,661,167
_15680
CA264_15685: CA264_15685 - 30S ribosomal protein S12 methylthiotransferase RimO, at 3,661,171 to 3,662,484
_15685
Position (kb)
3660
3661
3662 Strain fitness (log2 ratio)
-2
-1
0
1 at 3659.641 kb on + strand at 3660.892 kb on + strand, within CA264_15680 at 3660.892 kb on + strand, within CA264_15680 at 3660.892 kb on + strand, within CA264_15680 at 3660.892 kb on + strand, within CA264_15680 at 3660.893 kb on - strand, within CA264_15680 at 3660.899 kb on - strand, within CA264_15680 at 3660.963 kb on + strand, within CA264_15680 at 3661.031 kb on - strand, within CA264_15680 at 3661.109 kb on + strand, within CA264_15680 at 3661.110 kb on - strand, within CA264_15680 at 3661.151 kb on - strand at 3661.162 kb on + strand at 3661.163 kb on - strand at 3661.165 kb on + strand at 3661.179 kb on - strand at 3661.197 kb on + strand at 3661.208 kb on + strand at 3661.209 kb on - strand at 3661.212 kb on + strand at 3661.212 kb on + strand at 3661.213 kb on - strand at 3661.213 kb on - strand at 3661.315 kb on - strand, within CA264_15685 at 3661.416 kb on - strand, within CA264_15685 at 3661.426 kb on + strand, within CA264_15685 at 3661.426 kb on + strand, within CA264_15685 at 3661.427 kb on - strand, within CA264_15685 at 3661.430 kb on + strand, within CA264_15685 at 3661.453 kb on + strand, within CA264_15685 at 3661.454 kb on - strand, within CA264_15685 at 3661.495 kb on + strand, within CA264_15685 at 3661.600 kb on + strand, within CA264_15685 at 3661.600 kb on + strand, within CA264_15685 at 3661.601 kb on - strand, within CA264_15685 at 3661.605 kb on + strand, within CA264_15685 at 3661.606 kb on - strand, within CA264_15685 at 3661.673 kb on + strand, within CA264_15685 at 3661.673 kb on + strand, within CA264_15685 at 3661.674 kb on - strand, within CA264_15685 at 3661.760 kb on + strand, within CA264_15685 at 3661.760 kb on + strand, within CA264_15685 at 3661.761 kb on - strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.766 kb on - strand, within CA264_15685 at 3661.766 kb on - strand, within CA264_15685 at 3661.768 kb on + strand, within CA264_15685 at 3661.768 kb on + strand, within CA264_15685 at 3661.769 kb on - strand, within CA264_15685 at 3661.795 kb on - strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.859 kb on - strand, within CA264_15685 at 3661.864 kb on + strand, within CA264_15685 at 3662.052 kb on - strand, within CA264_15685 at 3662.063 kb on + strand, within CA264_15685 at 3662.063 kb on + strand, within CA264_15685 at 3662.064 kb on - strand, within CA264_15685 at 3662.111 kb on - strand, within CA264_15685 at 3662.111 kb on - strand, within CA264_15685 at 3662.154 kb on + strand, within CA264_15685 at 3662.154 kb on + strand, within CA264_15685 at 3662.155 kb on - strand, within CA264_15685 at 3662.155 kb on - strand, within CA264_15685
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 3,659,641 + +0.0 3,660,892 + CA264_15680 0.49 -0.4 3,660,892 + CA264_15680 0.49 -0.5 3,660,892 + CA264_15680 0.49 -0.7 3,660,892 + CA264_15680 0.49 -0.8 3,660,893 - CA264_15680 0.49 -0.1 3,660,899 - CA264_15680 0.50 -1.5 3,660,963 + CA264_15680 0.62 -0.4 3,661,031 - CA264_15680 0.75 -0.5 3,661,109 + CA264_15680 0.89 -0.8 3,661,110 - CA264_15680 0.89 -0.5 3,661,151 - -0.7 3,661,162 + +0.6 3,661,163 - -0.4 3,661,165 + -0.7 3,661,179 - -0.6 3,661,197 + +0.2 3,661,208 + +0.6 3,661,209 - -0.5 3,661,212 + +0.5 3,661,212 + -0.0 3,661,213 - +0.0 3,661,213 - -0.7 3,661,315 - CA264_15685 0.11 -0.3 3,661,416 - CA264_15685 0.19 -0.6 3,661,426 + CA264_15685 0.19 -0.4 3,661,426 + CA264_15685 0.19 -0.4 3,661,427 - CA264_15685 0.19 -0.9 3,661,430 + CA264_15685 0.20 +0.2 3,661,453 + CA264_15685 0.21 +0.6 3,661,454 - CA264_15685 0.22 -0.5 3,661,495 + CA264_15685 0.25 +1.5 3,661,600 + CA264_15685 0.33 -0.3 3,661,600 + CA264_15685 0.33 +0.5 3,661,601 - CA264_15685 0.33 -0.6 3,661,605 + CA264_15685 0.33 -0.1 3,661,606 - CA264_15685 0.33 +0.3 3,661,673 + CA264_15685 0.38 -0.4 3,661,673 + CA264_15685 0.38 -0.4 3,661,674 - CA264_15685 0.38 +1.5 3,661,760 + CA264_15685 0.45 +0.0 3,661,760 + CA264_15685 0.45 -0.3 3,661,761 - CA264_15685 0.45 +0.5 3,661,765 + CA264_15685 0.45 +0.7 3,661,765 + CA264_15685 0.45 -0.7 3,661,765 + CA264_15685 0.45 -0.2 3,661,765 + CA264_15685 0.45 -0.3 3,661,766 - CA264_15685 0.45 +0.8 3,661,766 - CA264_15685 0.45 -0.1 3,661,768 + CA264_15685 0.45 +0.5 3,661,768 + CA264_15685 0.45 -0.2 3,661,769 - CA264_15685 0.46 -1.0 3,661,795 - CA264_15685 0.47 -1.8 3,661,858 + CA264_15685 0.52 -0.1 3,661,858 + CA264_15685 0.52 -1.6 3,661,858 + CA264_15685 0.52 +0.5 3,661,858 + CA264_15685 0.52 -0.2 3,661,859 - CA264_15685 0.52 +0.3 3,661,864 + CA264_15685 0.53 -0.3 3,662,052 - CA264_15685 0.67 -1.8 3,662,063 + CA264_15685 0.68 -0.4 3,662,063 + CA264_15685 0.68 +1.7 3,662,064 - CA264_15685 0.68 -0.4 3,662,111 - CA264_15685 0.72 -0.5 3,662,111 - CA264_15685 0.72 -0.4 3,662,154 + CA264_15685 0.75 +0.0 3,662,154 + CA264_15685 0.75 -1.4 3,662,155 - CA264_15685 0.75 -0.1 3,662,155 - CA264_15685 0.75 +0.3
Or see this region's nucleotide sequence