Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15240 and CA264_15245 are separated by 10 nucleotides CA264_15245 and CA264_15250 are separated by 11 nucleotides CA264_15250 and CA264_15255 overlap by 4 nucleotides
CA264_15240: CA264_15240 - NAD kinase, at 3,569,966 to 3,570,853
_15240
CA264_15245: CA264_15245 - hypothetical protein, at 3,570,864 to 3,572,252
_15245
CA264_15250: CA264_15250 - cbs domain containing protein, at 3,572,264 to 3,572,929
_15250
CA264_15255: CA264_15255 - alpha/beta hydrolase, at 3,572,926 to 3,573,699
_15255
Position (kb)
3570
3571
3572
3573 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3569.921 kb on - strand at 3569.928 kb on - strand at 3570.922 kb on + strand at 3571.032 kb on + strand, within CA264_15245 at 3571.050 kb on - strand, within CA264_15245 at 3571.077 kb on + strand, within CA264_15245 at 3571.077 kb on + strand, within CA264_15245 at 3571.077 kb on + strand, within CA264_15245 at 3571.078 kb on - strand, within CA264_15245 at 3571.103 kb on + strand, within CA264_15245 at 3571.104 kb on - strand, within CA264_15245 at 3571.189 kb on + strand, within CA264_15245 at 3571.190 kb on - strand, within CA264_15245 at 3571.191 kb on + strand, within CA264_15245 at 3571.191 kb on + strand, within CA264_15245 at 3571.192 kb on - strand, within CA264_15245 at 3571.210 kb on + strand, within CA264_15245 at 3571.291 kb on + strand, within CA264_15245 at 3571.292 kb on - strand, within CA264_15245 at 3571.318 kb on + strand, within CA264_15245 at 3571.327 kb on + strand, within CA264_15245 at 3571.328 kb on - strand, within CA264_15245 at 3571.328 kb on - strand, within CA264_15245 at 3571.420 kb on + strand, within CA264_15245 at 3571.497 kb on - strand, within CA264_15245 at 3571.498 kb on + strand, within CA264_15245 at 3571.547 kb on - strand, within CA264_15245 at 3571.549 kb on + strand, within CA264_15245 at 3571.669 kb on + strand, within CA264_15245 at 3571.669 kb on + strand, within CA264_15245 at 3571.683 kb on + strand, within CA264_15245 at 3571.683 kb on + strand, within CA264_15245 at 3571.747 kb on + strand, within CA264_15245 at 3571.748 kb on - strand, within CA264_15245 at 3571.856 kb on - strand, within CA264_15245 at 3571.861 kb on - strand, within CA264_15245 at 3571.861 kb on - strand, within CA264_15245 at 3571.939 kb on + strand, within CA264_15245 at 3571.998 kb on - strand, within CA264_15245 at 3571.999 kb on + strand, within CA264_15245 at 3572.005 kb on - strand, within CA264_15245 at 3572.005 kb on - strand, within CA264_15245 at 3572.008 kb on + strand, within CA264_15245 at 3572.227 kb on - strand at 3572.270 kb on - strand at 3572.270 kb on - strand at 3572.270 kb on - strand at 3572.278 kb on - strand at 3572.455 kb on - strand, within CA264_15250 at 3572.455 kb on - strand, within CA264_15250 at 3572.455 kb on - strand, within CA264_15250 at 3572.620 kb on - strand, within CA264_15250 at 3572.689 kb on - strand, within CA264_15250 at 3572.803 kb on - strand, within CA264_15250 at 3572.944 kb on - strand at 3572.944 kb on - strand at 3572.968 kb on + strand at 3573.021 kb on + strand, within CA264_15255 at 3573.021 kb on + strand, within CA264_15255 at 3573.022 kb on - strand, within CA264_15255 at 3573.025 kb on + strand, within CA264_15255 at 3573.087 kb on + strand, within CA264_15255 at 3573.088 kb on - strand, within CA264_15255 at 3573.130 kb on + strand, within CA264_15255 at 3573.131 kb on - strand, within CA264_15255 at 3573.153 kb on + strand, within CA264_15255 at 3573.154 kb on - strand, within CA264_15255 at 3573.157 kb on - strand, within CA264_15255 at 3573.157 kb on - strand, within CA264_15255 at 3573.201 kb on + strand, within CA264_15255 at 3573.226 kb on + strand, within CA264_15255
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 3,569,921 - -0.0 3,569,928 - -0.5 3,570,922 + -0.0 3,571,032 + CA264_15245 0.12 +0.6 3,571,050 - CA264_15245 0.13 -0.6 3,571,077 + CA264_15245 0.15 -0.7 3,571,077 + CA264_15245 0.15 -1.0 3,571,077 + CA264_15245 0.15 -1.1 3,571,078 - CA264_15245 0.15 +0.5 3,571,103 + CA264_15245 0.17 +0.7 3,571,104 - CA264_15245 0.17 -0.8 3,571,189 + CA264_15245 0.23 +0.0 3,571,190 - CA264_15245 0.23 -1.2 3,571,191 + CA264_15245 0.24 -1.2 3,571,191 + CA264_15245 0.24 -0.8 3,571,192 - CA264_15245 0.24 -0.6 3,571,210 + CA264_15245 0.25 -2.0 3,571,291 + CA264_15245 0.31 -1.3 3,571,292 - CA264_15245 0.31 +0.7 3,571,318 + CA264_15245 0.33 -0.7 3,571,327 + CA264_15245 0.33 +0.2 3,571,328 - CA264_15245 0.33 -0.7 3,571,328 - CA264_15245 0.33 -1.4 3,571,420 + CA264_15245 0.40 -1.6 3,571,497 - CA264_15245 0.46 -0.5 3,571,498 + CA264_15245 0.46 +1.8 3,571,547 - CA264_15245 0.49 -0.0 3,571,549 + CA264_15245 0.49 +0.7 3,571,669 + CA264_15245 0.58 -0.5 3,571,669 + CA264_15245 0.58 +0.6 3,571,683 + CA264_15245 0.59 -0.8 3,571,683 + CA264_15245 0.59 -1.4 3,571,747 + CA264_15245 0.64 -0.7 3,571,748 - CA264_15245 0.64 -0.7 3,571,856 - CA264_15245 0.71 -0.6 3,571,861 - CA264_15245 0.72 -0.6 3,571,861 - CA264_15245 0.72 -1.2 3,571,939 + CA264_15245 0.77 +0.4 3,571,998 - CA264_15245 0.82 -1.1 3,571,999 + CA264_15245 0.82 -0.1 3,572,005 - CA264_15245 0.82 -0.7 3,572,005 - CA264_15245 0.82 -0.4 3,572,008 + CA264_15245 0.82 -0.7 3,572,227 - -0.7 3,572,270 - -0.7 3,572,270 - -1.3 3,572,270 - -0.2 3,572,278 - +0.5 3,572,455 - CA264_15250 0.29 +0.7 3,572,455 - CA264_15250 0.29 -0.8 3,572,455 - CA264_15250 0.29 +1.8 3,572,620 - CA264_15250 0.53 +0.8 3,572,689 - CA264_15250 0.64 -0.9 3,572,803 - CA264_15250 0.81 -0.1 3,572,944 - -0.7 3,572,944 - -0.8 3,572,968 + -0.5 3,573,021 + CA264_15255 0.12 -0.4 3,573,021 + CA264_15255 0.12 -1.3 3,573,022 - CA264_15255 0.12 -0.0 3,573,025 + CA264_15255 0.13 +0.1 3,573,087 + CA264_15255 0.21 -0.3 3,573,088 - CA264_15255 0.21 -0.2 3,573,130 + CA264_15255 0.26 -0.1 3,573,131 - CA264_15255 0.26 -1.1 3,573,153 + CA264_15255 0.29 +0.6 3,573,154 - CA264_15255 0.29 +1.5 3,573,157 - CA264_15255 0.30 -1.1 3,573,157 - CA264_15255 0.30 -0.7 3,573,201 + CA264_15255 0.36 +0.3 3,573,226 + CA264_15255 0.39 -3.1
Or see this region's nucleotide sequence