Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09765

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09760 and CA264_09765 are separated by 292 nucleotidesCA264_09765 and CA264_09770 are separated by 114 nucleotides CA264_09760: CA264_09760 - hypothetical protein, at 2,266,224 to 2,266,877 _09760 CA264_09765: CA264_09765 - NAD(P)H-dependent oxidoreductase, at 2,267,170 to 2,267,799 _09765 CA264_09770: CA264_09770 - transcriptional regulator, at 2,267,914 to 2,268,264 _09770 Position (kb) 2267 2268Strain fitness (log2 ratio) -1 0 1at 2266.287 kb on - strandat 2266.290 kb on + strand, within CA264_09760at 2266.290 kb on + strand, within CA264_09760at 2266.378 kb on + strand, within CA264_09760at 2266.420 kb on + strand, within CA264_09760at 2266.420 kb on + strand, within CA264_09760at 2266.421 kb on - strand, within CA264_09760at 2266.526 kb on - strand, within CA264_09760at 2266.562 kb on - strand, within CA264_09760at 2266.603 kb on + strand, within CA264_09760at 2266.603 kb on + strand, within CA264_09760at 2266.604 kb on - strand, within CA264_09760at 2266.604 kb on - strand, within CA264_09760at 2266.605 kb on + strand, within CA264_09760at 2266.686 kb on + strand, within CA264_09760at 2266.745 kb on + strand, within CA264_09760at 2266.745 kb on + strand, within CA264_09760at 2266.769 kb on + strand, within CA264_09760at 2266.867 kb on - strandat 2266.877 kb on + strandat 2266.878 kb on - strandat 2266.878 kb on - strandat 2266.909 kb on + strandat 2266.910 kb on - strandat 2266.979 kb on + strandat 2266.979 kb on + strandat 2266.989 kb on - strandat 2266.993 kb on + strandat 2266.993 kb on + strandat 2267.051 kb on + strandat 2267.111 kb on - strandat 2267.125 kb on + strandat 2267.148 kb on + strandat 2267.155 kb on + strandat 2267.184 kb on + strandat 2267.209 kb on + strandat 2267.217 kb on + strandat 2267.252 kb on + strand, within CA264_09765at 2267.258 kb on - strand, within CA264_09765at 2267.400 kb on - strand, within CA264_09765at 2267.409 kb on + strand, within CA264_09765at 2267.428 kb on - strand, within CA264_09765at 2267.528 kb on + strand, within CA264_09765at 2267.528 kb on + strand, within CA264_09765at 2267.528 kb on + strand, within CA264_09765at 2267.528 kb on + strand, within CA264_09765at 2267.529 kb on - strand, within CA264_09765at 2267.529 kb on - strand, within CA264_09765at 2267.529 kb on - strand, within CA264_09765at 2267.539 kb on - strand, within CA264_09765at 2267.539 kb on - strand, within CA264_09765at 2267.664 kb on + strand, within CA264_09765at 2267.768 kb on + strandat 2267.789 kb on - strandat 2267.867 kb on + strandat 2267.867 kb on + strandat 2267.897 kb on + strandat 2267.897 kb on + strandat 2267.955 kb on + strand, within CA264_09770at 2268.066 kb on - strand, within CA264_09770at 2268.075 kb on - strand, within CA264_09770at 2268.126 kb on + strand, within CA264_09770at 2268.126 kb on + strand, within CA264_09770at 2268.127 kb on - strand, within CA264_09770at 2268.143 kb on + strand, within CA264_09770at 2268.147 kb on + strand, within CA264_09770at 2268.170 kb on - strand, within CA264_09770at 2268.176 kb on + strand, within CA264_09770at 2268.176 kb on + strand, within CA264_09770at 2268.251 kb on + strandat 2268.263 kb on - strandat 2268.313 kb on - strandat 2268.331 kb on - strandat 2268.334 kb on - strandat 2268.354 kb on - strandat 2268.438 kb on - strandat 2268.507 kb on + strandat 2268.507 kb on + strandat 2268.507 kb on + strandat 2268.507 kb on + strandat 2268.507 kb on + strandat 2268.508 kb on - strandat 2268.508 kb on - strandat 2268.509 kb on + strandat 2268.509 kb on + strandat 2268.509 kb on + strandat 2268.510 kb on - strandat 2268.510 kb on - strandat 2268.510 kb on - strandat 2268.548 kb on + strandat 2268.575 kb on - strandat 2268.578 kb on + strandat 2268.579 kb on - strandat 2268.582 kb on + strandat 2268.582 kb on + strandat 2268.596 kb on + strandat 2268.596 kb on + strandat 2268.597 kb on - strandat 2268.606 kb on + strandat 2268.661 kb on - strandat 2268.716 kb on - strandat 2268.730 kb on + strandat 2268.730 kb on + strandat 2268.731 kb on - strandat 2268.731 kb on - strandat 2268.731 kb on - strandat 2268.731 kb on - strandat 2268.731 kb on - strandat 2268.732 kb on + strandat 2268.733 kb on - strandat 2268.733 kb on - strandat 2268.733 kb on - strandat 2268.741 kb on + strandat 2268.743 kb on + strandat 2268.744 kb on - strandat 2268.744 kb on - strandat 2268.744 kb on - strandat 2268.744 kb on - strandat 2268.753 kb on + strandat 2268.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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2,266,287 - +0.1
2,266,290 + CA264_09760 0.10 +0.1
2,266,290 + CA264_09760 0.10 -0.1
2,266,378 + CA264_09760 0.24 +0.1
2,266,420 + CA264_09760 0.30 -0.8
2,266,420 + CA264_09760 0.30 -0.2
2,266,421 - CA264_09760 0.30 -0.0
2,266,526 - CA264_09760 0.46 +1.0
2,266,562 - CA264_09760 0.52 -0.3
2,266,603 + CA264_09760 0.58 -0.2
2,266,603 + CA264_09760 0.58 -0.7
2,266,604 - CA264_09760 0.58 +0.1
2,266,604 - CA264_09760 0.58 -0.3
2,266,605 + CA264_09760 0.58 -0.5
2,266,686 + CA264_09760 0.71 +0.7
2,266,745 + CA264_09760 0.80 +0.1
2,266,745 + CA264_09760 0.80 -0.9
2,266,769 + CA264_09760 0.83 +1.4
2,266,867 - +0.5
2,266,877 + -0.2
2,266,878 - +0.6
2,266,878 - +0.4
2,266,909 + -0.2
2,266,910 - -0.0
2,266,979 + -0.6
2,266,979 + -1.0
2,266,989 - +0.0
2,266,993 + -0.7
2,266,993 + -0.4
2,267,051 + +1.0
2,267,111 - -0.0
2,267,125 + -1.3
2,267,148 + +1.1
2,267,155 + -0.2
2,267,184 + +0.3
2,267,209 + -1.0
2,267,217 + -0.3
2,267,252 + CA264_09765 0.13 -0.5
2,267,258 - CA264_09765 0.14 +0.2
2,267,400 - CA264_09765 0.37 -0.0
2,267,409 + CA264_09765 0.38 -0.2
2,267,428 - CA264_09765 0.41 +0.4
2,267,528 + CA264_09765 0.57 -0.3
2,267,528 + CA264_09765 0.57 +1.1
2,267,528 + CA264_09765 0.57 +0.6
2,267,528 + CA264_09765 0.57 +0.8
2,267,529 - CA264_09765 0.57 +0.4
2,267,529 - CA264_09765 0.57 +1.0
2,267,529 - CA264_09765 0.57 -0.3
2,267,539 - CA264_09765 0.59 +0.3
2,267,539 - CA264_09765 0.59 +0.8
2,267,664 + CA264_09765 0.78 -0.3
2,267,768 + -0.5
2,267,789 - +0.1
2,267,867 + +0.7
2,267,867 + -0.3
2,267,897 + +0.1
2,267,897 + -0.5
2,267,955 + CA264_09770 0.12 -0.6
2,268,066 - CA264_09770 0.43 -0.4
2,268,075 - CA264_09770 0.46 -0.3
2,268,126 + CA264_09770 0.60 +0.0
2,268,126 + CA264_09770 0.60 +0.0
2,268,127 - CA264_09770 0.61 -0.3
2,268,143 + CA264_09770 0.65 -0.7
2,268,147 + CA264_09770 0.66 -0.0
2,268,170 - CA264_09770 0.73 -1.5
2,268,176 + CA264_09770 0.75 +0.2
2,268,176 + CA264_09770 0.75 -0.2
2,268,251 + +1.1
2,268,263 - -0.7
2,268,313 - -0.2
2,268,331 - -0.9
2,268,334 - -0.4
2,268,354 - -0.3
2,268,438 - +0.1
2,268,507 + -0.1
2,268,507 + -0.4
2,268,507 + -0.1
2,268,507 + -0.4
2,268,507 + +0.2
2,268,508 - -1.5
2,268,508 - -0.8
2,268,509 + +0.5
2,268,509 + +0.2
2,268,509 + +0.3
2,268,510 - -0.2
2,268,510 - -0.4
2,268,510 - +0.0
2,268,548 + +0.0
2,268,575 - -0.4
2,268,578 + +0.5
2,268,579 - +0.1
2,268,582 + -0.0
2,268,582 + +0.1
2,268,596 + -0.7
2,268,596 + +0.9
2,268,597 - -0.8
2,268,606 + +0.2
2,268,661 - +0.3
2,268,716 - +1.2
2,268,730 + -0.6
2,268,730 + -1.6
2,268,731 - -0.1
2,268,731 - +1.3
2,268,731 - -0.9
2,268,731 - +0.3
2,268,731 - -0.2
2,268,732 + -0.8
2,268,733 - -1.0
2,268,733 - -0.1
2,268,733 - -0.6
2,268,741 + +0.2
2,268,743 + -0.3
2,268,744 - +0.6
2,268,744 - +0.8
2,268,744 - +0.0
2,268,744 - -1.1
2,268,753 + +0.1
2,268,764 - -0.7

Or see this region's nucleotide sequence