Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07370

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07360 and CA264_07365 are separated by 142 nucleotidesCA264_07365 and CA264_07370 are separated by 541 nucleotidesCA264_07370 and CA264_07375 are separated by 418 nucleotides CA264_07360: CA264_07360 - hypothetical protein, at 1,697,864 to 1,698,100 _07360 CA264_07365: CA264_07365 - hypothetical protein, at 1,698,243 to 1,698,488 _07365 CA264_07370: CA264_07370 - TetR family transcriptional regulator, at 1,699,030 to 1,699,650 _07370 CA264_07375: CA264_07375 - NADH-dependent alcohol dehydrogenase, at 1,700,069 to 1,701,226 _07375 Position (kb) 1699 1700Strain fitness (log2 ratio) -1 0 1 2 3at 1698.068 kb on - strand, within CA264_07360at 1698.073 kb on + strand, within CA264_07360at 1698.104 kb on + strandat 1698.104 kb on + strandat 1698.105 kb on - strandat 1698.105 kb on - strandat 1698.109 kb on + strandat 1698.109 kb on + strandat 1698.116 kb on - strandat 1698.116 kb on - strandat 1698.188 kb on + strandat 1698.189 kb on - strandat 1698.189 kb on - strandat 1698.189 kb on - strandat 1698.218 kb on + strandat 1698.219 kb on - strandat 1698.232 kb on - strandat 1698.268 kb on + strand, within CA264_07365at 1698.417 kb on - strand, within CA264_07365at 1698.419 kb on + strand, within CA264_07365at 1698.420 kb on - strand, within CA264_07365at 1698.420 kb on - strand, within CA264_07365at 1698.441 kb on - strand, within CA264_07365at 1698.473 kb on + strandat 1698.527 kb on - strandat 1698.527 kb on - strandat 1698.547 kb on + strandat 1698.597 kb on + strandat 1698.689 kb on + strandat 1698.689 kb on + strandat 1698.690 kb on - strandat 1698.690 kb on - strandat 1698.691 kb on + strandat 1698.691 kb on + strandat 1698.691 kb on + strandat 1698.692 kb on - strandat 1698.692 kb on - strandat 1698.695 kb on + strandat 1698.695 kb on + strandat 1698.709 kb on + strandat 1698.787 kb on + strandat 1698.840 kb on + strandat 1698.844 kb on + strandat 1698.918 kb on - strandat 1698.928 kb on + strandat 1698.929 kb on - strandat 1698.991 kb on + strandat 1698.997 kb on + strandat 1698.999 kb on + strandat 1699.003 kb on + strandat 1699.028 kb on + strandat 1699.099 kb on + strand, within CA264_07370at 1699.100 kb on - strand, within CA264_07370at 1699.105 kb on - strand, within CA264_07370at 1699.221 kb on + strand, within CA264_07370at 1699.224 kb on - strand, within CA264_07370at 1699.281 kb on - strand, within CA264_07370at 1699.297 kb on + strand, within CA264_07370at 1699.298 kb on - strand, within CA264_07370at 1699.318 kb on + strand, within CA264_07370at 1699.389 kb on + strand, within CA264_07370at 1699.443 kb on + strand, within CA264_07370at 1699.450 kb on + strand, within CA264_07370at 1699.554 kb on + strand, within CA264_07370at 1699.572 kb on + strand, within CA264_07370at 1699.668 kb on + strandat 1699.684 kb on + strandat 1699.685 kb on - strandat 1699.685 kb on - strandat 1699.685 kb on - strandat 1699.749 kb on + strandat 1699.750 kb on - strandat 1699.750 kb on - strandat 1699.750 kb on - strandat 1699.753 kb on - strandat 1699.762 kb on - strandat 1699.838 kb on + strandat 1699.849 kb on + strandat 1699.964 kb on - strandat 1700.007 kb on - strandat 1700.197 kb on - strand, within CA264_07375at 1700.348 kb on - strand, within CA264_07375at 1700.430 kb on + strand, within CA264_07375at 1700.515 kb on + strand, within CA264_07375at 1700.520 kb on + strand, within CA264_07375at 1700.625 kb on + strand, within CA264_07375at 1700.626 kb on - strand, within CA264_07375

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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1,698,068 - CA264_07360 0.86 -0.2
1,698,073 + CA264_07360 0.88 -0.8
1,698,104 + -0.1
1,698,104 + -0.6
1,698,105 - -0.7
1,698,105 - +0.1
1,698,109 + +0.0
1,698,109 + +0.6
1,698,116 - -0.1
1,698,116 - -0.7
1,698,188 + +0.9
1,698,189 - -0.8
1,698,189 - +0.2
1,698,189 - -0.2
1,698,218 + -0.4
1,698,219 - +0.5
1,698,232 - +0.8
1,698,268 + CA264_07365 0.10 -0.3
1,698,417 - CA264_07365 0.71 -0.3
1,698,419 + CA264_07365 0.72 -1.1
1,698,420 - CA264_07365 0.72 -0.9
1,698,420 - CA264_07365 0.72 -1.1
1,698,441 - CA264_07365 0.80 -0.7
1,698,473 + -0.8
1,698,527 - -0.2
1,698,527 - -0.1
1,698,547 + -0.3
1,698,597 + -0.6
1,698,689 + +0.4
1,698,689 + -0.8
1,698,690 - -0.2
1,698,690 - +0.4
1,698,691 + -1.2
1,698,691 + +0.5
1,698,691 + +0.5
1,698,692 - +0.4
1,698,692 - -0.1
1,698,695 + +0.1
1,698,695 + +0.3
1,698,709 + +0.2
1,698,787 + +0.2
1,698,840 + +0.4
1,698,844 + +0.1
1,698,918 - -1.0
1,698,928 + -0.3
1,698,929 - +3.0
1,698,991 + -0.2
1,698,997 + +0.1
1,698,999 + +0.9
1,699,003 + +0.6
1,699,028 + -0.3
1,699,099 + CA264_07370 0.11 +0.6
1,699,100 - CA264_07370 0.11 -0.5
1,699,105 - CA264_07370 0.12 -0.0
1,699,221 + CA264_07370 0.31 -0.2
1,699,224 - CA264_07370 0.31 +0.1
1,699,281 - CA264_07370 0.40 -0.4
1,699,297 + CA264_07370 0.43 -0.2
1,699,298 - CA264_07370 0.43 -0.2
1,699,318 + CA264_07370 0.46 -0.6
1,699,389 + CA264_07370 0.58 -0.6
1,699,443 + CA264_07370 0.67 -0.5
1,699,450 + CA264_07370 0.68 -0.3
1,699,554 + CA264_07370 0.84 +0.9
1,699,572 + CA264_07370 0.87 -0.2
1,699,668 + -0.0
1,699,684 + -0.2
1,699,685 - -0.2
1,699,685 - -0.4
1,699,685 - +0.3
1,699,749 + +0.6
1,699,750 - -0.3
1,699,750 - -0.8
1,699,750 - +0.3
1,699,753 - +1.5
1,699,762 - +0.0
1,699,838 + -0.1
1,699,849 + +0.3
1,699,964 - -1.6
1,700,007 - -0.7
1,700,197 - CA264_07375 0.11 +0.2
1,700,348 - CA264_07375 0.24 -0.3
1,700,430 + CA264_07375 0.31 +0.6
1,700,515 + CA264_07375 0.39 -0.2
1,700,520 + CA264_07375 0.39 -0.2
1,700,625 + CA264_07375 0.48 -1.0
1,700,626 - CA264_07375 0.48 -0.1

Or see this region's nucleotide sequence