Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06685

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06675 and CA264_06680 are separated by 586 nucleotidesCA264_06680 and CA264_06685 are separated by 94 nucleotidesCA264_06685 and CA264_06690 are separated by 311 nucleotides CA264_06675: CA264_06675 - AraC family transcriptional regulator, at 1,539,380 to 1,540,309 _06675 CA264_06680: CA264_06680 - 5S ribosomal RNA, at 1,540,896 to 1,541,007 _06680 CA264_06685: CA264_06685 - 23S ribosomal RNA, at 1,541,102 to 1,543,987 _06685 CA264_06690: CA264_06690 - 16S ribosomal RNA, at 1,544,299 to 1,545,819 _06690 Position (kb) 1541 1542 1543 1544Strain fitness (log2 ratio) -1 0 1at 1540.154 kb on + strand, within CA264_06675at 1540.154 kb on + strand, within CA264_06675at 1540.154 kb on + strand, within CA264_06675at 1540.223 kb on + strandat 1540.247 kb on - strandat 1540.262 kb on + strandat 1540.262 kb on + strandat 1540.272 kb on - strandat 1540.333 kb on + strandat 1540.334 kb on - strandat 1540.338 kb on - strandat 1540.338 kb on - strandat 1540.340 kb on - strandat 1540.389 kb on + strandat 1540.390 kb on - strandat 1540.396 kb on + strandat 1540.397 kb on - strandat 1540.397 kb on - strandat 1540.400 kb on - strandat 1540.400 kb on - strandat 1540.403 kb on + strandat 1540.417 kb on - strandat 1540.441 kb on + strandat 1540.442 kb on - strandat 1540.442 kb on - strandat 1540.448 kb on + strandat 1540.470 kb on - strandat 1540.477 kb on - strandat 1540.483 kb on - strandat 1540.499 kb on + strandat 1540.500 kb on - strandat 1540.574 kb on + strandat 1540.575 kb on - strandat 1540.578 kb on + strandat 1540.579 kb on - strandat 1540.597 kb on - strandat 1540.600 kb on - strandat 1540.601 kb on + strandat 1540.601 kb on + strandat 1540.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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1,540,154 + CA264_06675 0.83 -0.1
1,540,154 + CA264_06675 0.83 +0.7
1,540,154 + CA264_06675 0.83 -0.2
1,540,223 + +0.8
1,540,247 - -0.6
1,540,262 + -0.1
1,540,262 + +0.6
1,540,272 - +1.0
1,540,333 + +0.2
1,540,334 - -0.4
1,540,338 - -0.1
1,540,338 - -0.1
1,540,340 - +0.1
1,540,389 + +0.2
1,540,390 - -0.0
1,540,396 + +1.0
1,540,397 - -0.5
1,540,397 - +0.0
1,540,400 - -0.3
1,540,400 - +1.2
1,540,403 + -0.7
1,540,417 - -0.3
1,540,441 + -0.8
1,540,442 - +0.3
1,540,442 - -0.1
1,540,448 + +0.2
1,540,470 - +0.3
1,540,477 - -0.6
1,540,483 - +0.9
1,540,499 + +0.1
1,540,500 - -0.8
1,540,574 + +0.1
1,540,575 - -0.1
1,540,578 + +0.4
1,540,579 - +0.2
1,540,597 - +0.7
1,540,600 - +0.6
1,540,601 + -0.3
1,540,601 + -1.5
1,540,617 + +0.1

Or see this region's nucleotide sequence