Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04550

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04545 and CA264_04550 are separated by 4 nucleotidesCA264_04550 and CA264_04555 are separated by 129 nucleotides CA264_04545: CA264_04545 - dTDP-Rha--alpha-D-GlcNAc-pyrophosphate polyprenol alpha-3-L-rhamnosyltransferase, at 1,049,757 to 1,050,764 _04545 CA264_04550: CA264_04550 - nucleoid-associated protein, YbaB/EbfC family, at 1,050,769 to 1,051,104 _04550 CA264_04555: CA264_04555 - T9SS C-terminal target domain-containing protein, at 1,051,234 to 1,053,171 _04555 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -3 -2 -1 0 1at 1051.021 kb on - strand, within CA264_04550at 1051.095 kb on + strandat 1051.095 kb on + strandat 1051.095 kb on + strandat 1051.104 kb on + strandat 1051.122 kb on + strandat 1051.159 kb on + strandat 1051.159 kb on + strandat 1051.160 kb on - strandat 1051.167 kb on + strandat 1051.167 kb on + strandat 1051.169 kb on + strandat 1051.169 kb on + strandat 1051.197 kb on + strandat 1051.210 kb on + strandat 1051.296 kb on + strandat 1051.383 kb on + strandat 1051.384 kb on - strandat 1051.418 kb on + strandat 1051.452 kb on + strand, within CA264_04555at 1051.496 kb on + strand, within CA264_04555at 1051.531 kb on - strand, within CA264_04555at 1051.535 kb on + strand, within CA264_04555at 1051.591 kb on + strand, within CA264_04555at 1051.591 kb on + strand, within CA264_04555at 1051.592 kb on - strand, within CA264_04555at 1051.592 kb on - strand, within CA264_04555at 1051.617 kb on + strand, within CA264_04555at 1051.685 kb on + strand, within CA264_04555at 1051.686 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.716 kb on - strand, within CA264_04555at 1051.735 kb on + strand, within CA264_04555at 1051.735 kb on + strand, within CA264_04555at 1051.870 kb on - strand, within CA264_04555at 1051.870 kb on - strand, within CA264_04555at 1051.871 kb on + strand, within CA264_04555at 1051.871 kb on + strand, within CA264_04555at 1051.871 kb on + strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.902 kb on + strand, within CA264_04555at 1051.905 kb on - strand, within CA264_04555at 1051.905 kb on - strand, within CA264_04555at 1051.905 kb on - strand, within CA264_04555at 1051.969 kb on - strand, within CA264_04555at 1051.969 kb on - strand, within CA264_04555at 1051.992 kb on + strand, within CA264_04555at 1051.993 kb on - strand, within CA264_04555at 1052.073 kb on - strand, within CA264_04555at 1052.073 kb on - strand, within CA264_04555

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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1,051,021 - CA264_04550 0.75 -1.3
1,051,095 + +0.3
1,051,095 + -0.6
1,051,095 + -0.9
1,051,104 + +0.0
1,051,122 + +0.7
1,051,159 + -0.2
1,051,159 + +0.2
1,051,160 - +0.2
1,051,167 + -0.3
1,051,167 + -0.3
1,051,169 + -3.1
1,051,169 + +0.2
1,051,197 + -0.3
1,051,210 + +0.3
1,051,296 + +0.5
1,051,383 + -0.7
1,051,384 - -0.3
1,051,418 + -0.1
1,051,452 + CA264_04555 0.11 +1.0
1,051,496 + CA264_04555 0.14 +0.1
1,051,531 - CA264_04555 0.15 +0.4
1,051,535 + CA264_04555 0.16 -0.4
1,051,591 + CA264_04555 0.18 +0.7
1,051,591 + CA264_04555 0.18 -0.5
1,051,592 - CA264_04555 0.18 +0.1
1,051,592 - CA264_04555 0.18 -0.2
1,051,617 + CA264_04555 0.20 -0.8
1,051,685 + CA264_04555 0.23 -0.9
1,051,686 - CA264_04555 0.23 +0.1
1,051,694 - CA264_04555 0.24 -0.6
1,051,694 - CA264_04555 0.24 +0.2
1,051,694 - CA264_04555 0.24 -0.4
1,051,694 - CA264_04555 0.24 -0.3
1,051,716 - CA264_04555 0.25 +0.2
1,051,735 + CA264_04555 0.26 +0.8
1,051,735 + CA264_04555 0.26 +0.1
1,051,870 - CA264_04555 0.33 +0.0
1,051,870 - CA264_04555 0.33 -1.6
1,051,871 + CA264_04555 0.33 +0.4
1,051,871 + CA264_04555 0.33 -0.4
1,051,871 + CA264_04555 0.33 +0.0
1,051,872 - CA264_04555 0.33 -1.1
1,051,872 - CA264_04555 0.33 -0.7
1,051,872 - CA264_04555 0.33 +0.4
1,051,872 - CA264_04555 0.33 +0.5
1,051,872 - CA264_04555 0.33 +0.2
1,051,902 + CA264_04555 0.34 -0.1
1,051,905 - CA264_04555 0.35 +0.1
1,051,905 - CA264_04555 0.35 +1.1
1,051,905 - CA264_04555 0.35 +0.8
1,051,969 - CA264_04555 0.38 +0.2
1,051,969 - CA264_04555 0.38 -0.3
1,051,992 + CA264_04555 0.39 -1.9
1,051,993 - CA264_04555 0.39 -1.1
1,052,073 - CA264_04555 0.43 -0.6
1,052,073 - CA264_04555 0.43 -0.1

Or see this region's nucleotide sequence