Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04545 and CA264_04550 are separated by 4 nucleotides CA264_04550 and CA264_04555 are separated by 129 nucleotides
CA264_04545: CA264_04545 - dTDP-Rha--alpha-D-GlcNAc-pyrophosphate polyprenol alpha-3-L-rhamnosyltransferase, at 1,049,757 to 1,050,764
_04545
CA264_04550: CA264_04550 - nucleoid-associated protein, YbaB/EbfC family, at 1,050,769 to 1,051,104
_04550
CA264_04555: CA264_04555 - T9SS C-terminal target domain-containing protein, at 1,051,234 to 1,053,171
_04555
Position (kb)
1050
1051
1052 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1051.021 kb on - strand, within CA264_04550 at 1051.095 kb on + strand at 1051.095 kb on + strand at 1051.095 kb on + strand at 1051.104 kb on + strand at 1051.122 kb on + strand at 1051.159 kb on + strand at 1051.159 kb on + strand at 1051.160 kb on - strand at 1051.167 kb on + strand at 1051.167 kb on + strand at 1051.169 kb on + strand at 1051.169 kb on + strand at 1051.197 kb on + strand at 1051.210 kb on + strand at 1051.296 kb on + strand at 1051.383 kb on + strand at 1051.384 kb on - strand at 1051.418 kb on + strand at 1051.452 kb on + strand, within CA264_04555 at 1051.496 kb on + strand, within CA264_04555 at 1051.531 kb on - strand, within CA264_04555 at 1051.535 kb on + strand, within CA264_04555 at 1051.591 kb on + strand, within CA264_04555 at 1051.591 kb on + strand, within CA264_04555 at 1051.592 kb on - strand, within CA264_04555 at 1051.592 kb on - strand, within CA264_04555 at 1051.617 kb on + strand, within CA264_04555 at 1051.685 kb on + strand, within CA264_04555 at 1051.686 kb on - strand, within CA264_04555 at 1051.694 kb on - strand, within CA264_04555 at 1051.694 kb on - strand, within CA264_04555 at 1051.694 kb on - strand, within CA264_04555 at 1051.694 kb on - strand, within CA264_04555 at 1051.716 kb on - strand, within CA264_04555 at 1051.735 kb on + strand, within CA264_04555 at 1051.735 kb on + strand, within CA264_04555 at 1051.870 kb on - strand, within CA264_04555 at 1051.870 kb on - strand, within CA264_04555 at 1051.871 kb on + strand, within CA264_04555 at 1051.871 kb on + strand, within CA264_04555 at 1051.871 kb on + strand, within CA264_04555 at 1051.872 kb on - strand, within CA264_04555 at 1051.872 kb on - strand, within CA264_04555 at 1051.872 kb on - strand, within CA264_04555 at 1051.872 kb on - strand, within CA264_04555 at 1051.872 kb on - strand, within CA264_04555 at 1051.902 kb on + strand, within CA264_04555 at 1051.905 kb on - strand, within CA264_04555 at 1051.905 kb on - strand, within CA264_04555 at 1051.905 kb on - strand, within CA264_04555 at 1051.969 kb on - strand, within CA264_04555 at 1051.969 kb on - strand, within CA264_04555 at 1051.992 kb on + strand, within CA264_04555 at 1051.993 kb on - strand, within CA264_04555 at 1052.073 kb on - strand, within CA264_04555 at 1052.073 kb on - strand, within CA264_04555
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 1,051,021 - CA264_04550 0.75 -1.3 1,051,095 + +0.3 1,051,095 + -0.6 1,051,095 + -0.9 1,051,104 + +0.0 1,051,122 + +0.7 1,051,159 + -0.2 1,051,159 + +0.2 1,051,160 - +0.2 1,051,167 + -0.3 1,051,167 + -0.3 1,051,169 + -3.1 1,051,169 + +0.2 1,051,197 + -0.3 1,051,210 + +0.3 1,051,296 + +0.5 1,051,383 + -0.7 1,051,384 - -0.3 1,051,418 + -0.1 1,051,452 + CA264_04555 0.11 +1.0 1,051,496 + CA264_04555 0.14 +0.1 1,051,531 - CA264_04555 0.15 +0.4 1,051,535 + CA264_04555 0.16 -0.4 1,051,591 + CA264_04555 0.18 +0.7 1,051,591 + CA264_04555 0.18 -0.5 1,051,592 - CA264_04555 0.18 +0.1 1,051,592 - CA264_04555 0.18 -0.2 1,051,617 + CA264_04555 0.20 -0.8 1,051,685 + CA264_04555 0.23 -0.9 1,051,686 - CA264_04555 0.23 +0.1 1,051,694 - CA264_04555 0.24 -0.6 1,051,694 - CA264_04555 0.24 +0.2 1,051,694 - CA264_04555 0.24 -0.4 1,051,694 - CA264_04555 0.24 -0.3 1,051,716 - CA264_04555 0.25 +0.2 1,051,735 + CA264_04555 0.26 +0.8 1,051,735 + CA264_04555 0.26 +0.1 1,051,870 - CA264_04555 0.33 +0.0 1,051,870 - CA264_04555 0.33 -1.6 1,051,871 + CA264_04555 0.33 +0.4 1,051,871 + CA264_04555 0.33 -0.4 1,051,871 + CA264_04555 0.33 +0.0 1,051,872 - CA264_04555 0.33 -1.1 1,051,872 - CA264_04555 0.33 -0.7 1,051,872 - CA264_04555 0.33 +0.4 1,051,872 - CA264_04555 0.33 +0.5 1,051,872 - CA264_04555 0.33 +0.2 1,051,902 + CA264_04555 0.34 -0.1 1,051,905 - CA264_04555 0.35 +0.1 1,051,905 - CA264_04555 0.35 +1.1 1,051,905 - CA264_04555 0.35 +0.8 1,051,969 - CA264_04555 0.38 +0.2 1,051,969 - CA264_04555 0.38 -0.3 1,051,992 + CA264_04555 0.39 -1.9 1,051,993 - CA264_04555 0.39 -1.1 1,052,073 - CA264_04555 0.43 -0.6 1,052,073 - CA264_04555 0.43 -0.1
Or see this region's nucleotide sequence