Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03650 and CA264_03655 are separated by 25 nucleotides CA264_03655 and CA264_03660 are separated by 97 nucleotides
CA264_03650: CA264_03650 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 850,970 to 852,118
_03650
CA264_03655: CA264_03655 - multidrug efflux RND transporter permease subunit, at 852,144 to 855,338
_03655
CA264_03660: CA264_03660 - hypothetical protein, at 855,436 to 855,912
_03660
Position (kb) 852
853
854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 851.207 kb on + strand, within CA264_03650 at 851.271 kb on - strand, within CA264_03650 at 851.397 kb on + strand, within CA264_03650 at 851.398 kb on - strand, within CA264_03650 at 851.398 kb on - strand, within CA264_03650 at 851.402 kb on + strand, within CA264_03650 at 851.402 kb on + strand, within CA264_03650 at 851.621 kb on - strand, within CA264_03650 at 851.647 kb on - strand, within CA264_03650 at 851.712 kb on - strand, within CA264_03650 at 851.773 kb on + strand, within CA264_03650 at 851.774 kb on - strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.922 kb on + strand, within CA264_03650 at 851.922 kb on + strand, within CA264_03650 at 852.025 kb on - strand at 852.035 kb on - strand at 852.157 kb on + strand at 852.161 kb on + strand at 852.163 kb on + strand at 852.182 kb on + strand at 852.184 kb on + strand at 852.194 kb on + strand at 852.195 kb on - strand at 852.195 kb on - strand at 852.196 kb on + strand at 852.196 kb on + strand at 852.196 kb on + strand at 852.196 kb on + strand at 852.225 kb on - strand at 852.257 kb on + strand at 852.291 kb on + strand at 852.292 kb on - strand at 852.292 kb on - strand at 852.294 kb on - strand at 852.375 kb on + strand at 852.375 kb on + strand at 852.376 kb on - strand at 852.376 kb on - strand at 852.380 kb on + strand at 852.380 kb on + strand at 852.386 kb on + strand at 852.387 kb on - strand at 852.511 kb on + strand, within CA264_03655 at 852.616 kb on - strand, within CA264_03655 at 852.616 kb on - strand, within CA264_03655 at 852.627 kb on + strand, within CA264_03655 at 852.627 kb on + strand, within CA264_03655 at 852.627 kb on + strand, within CA264_03655 at 852.628 kb on - strand, within CA264_03655 at 852.628 kb on - strand, within CA264_03655 at 852.628 kb on - strand, within CA264_03655 at 852.719 kb on + strand, within CA264_03655 at 852.733 kb on - strand, within CA264_03655 at 852.756 kb on - strand, within CA264_03655 at 852.756 kb on - strand, within CA264_03655 at 852.894 kb on - strand, within CA264_03655 at 852.930 kb on + strand, within CA264_03655 at 852.930 kb on + strand, within CA264_03655 at 852.972 kb on + strand, within CA264_03655 at 853.064 kb on + strand, within CA264_03655 at 853.068 kb on + strand, within CA264_03655 at 853.068 kb on + strand, within CA264_03655 at 853.289 kb on + strand, within CA264_03655 at 853.314 kb on - strand, within CA264_03655 at 853.404 kb on + strand, within CA264_03655 at 853.405 kb on - strand, within CA264_03655 at 853.405 kb on - strand, within CA264_03655 at 853.405 kb on - strand, within CA264_03655 at 853.460 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.607 kb on + strand, within CA264_03655 at 853.613 kb on - strand, within CA264_03655 at 853.692 kb on - strand, within CA264_03655 at 853.736 kb on - strand, within CA264_03655 at 853.791 kb on - strand, within CA264_03655 at 853.791 kb on - strand, within CA264_03655 at 853.791 kb on - strand, within CA264_03655 at 853.794 kb on + strand, within CA264_03655 at 853.794 kb on + strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.812 kb on - strand at 853.839 kb on - strand, within CA264_03655 at 853.841 kb on - strand, within CA264_03655 at 853.844 kb on + strand, within CA264_03655 at 853.919 kb on - strand, within CA264_03655 at 853.947 kb on - strand, within CA264_03655 at 853.976 kb on + strand, within CA264_03655 at 853.998 kb on - strand, within CA264_03655 at 854.028 kb on + strand, within CA264_03655 at 854.028 kb on + strand, within CA264_03655 at 854.029 kb on - strand, within CA264_03655 at 854.097 kb on - strand, within CA264_03655 at 854.137 kb on + strand, within CA264_03655 at 854.295 kb on + strand, within CA264_03655 at 854.298 kb on - strand, within CA264_03655 at 854.339 kb on - strand, within CA264_03655 at 854.381 kb on + strand, within CA264_03655 at 854.382 kb on - strand, within CA264_03655 at 854.385 kb on + strand, within CA264_03655 at 854.385 kb on + strand, within CA264_03655 at 854.390 kb on + strand, within CA264_03655 at 854.391 kb on - strand, within CA264_03655 at 854.403 kb on + strand, within CA264_03655 at 854.403 kb on + strand, within CA264_03655 at 854.403 kb on + strand, within CA264_03655 at 854.404 kb on - strand, within CA264_03655 at 854.404 kb on - strand, within CA264_03655 at 854.461 kb on + strand, within CA264_03655 at 854.474 kb on + strand, within CA264_03655 at 854.474 kb on + strand, within CA264_03655 at 854.475 kb on - strand, within CA264_03655 at 854.475 kb on - strand, within CA264_03655 at 854.481 kb on + strand, within CA264_03655 at 854.481 kb on + strand, within CA264_03655 at 854.512 kb on - strand, within CA264_03655 at 854.512 kb on - strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.515 kb on - strand, within CA264_03655 at 854.515 kb on - strand, within CA264_03655 at 854.634 kb on - strand, within CA264_03655 at 854.649 kb on + strand, within CA264_03655 at 854.649 kb on + strand, within CA264_03655 at 854.650 kb on - strand, within CA264_03655 at 854.698 kb on + strand, within CA264_03655 at 854.698 kb on + strand, within CA264_03655 at 854.793 kb on - strand, within CA264_03655 at 854.794 kb on + strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.823 kb on + strand, within CA264_03655 at 854.824 kb on - strand, within CA264_03655 at 854.905 kb on + strand, within CA264_03655 at 854.906 kb on - strand, within CA264_03655 at 854.909 kb on + strand, within CA264_03655 at 854.942 kb on + strand, within CA264_03655 at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.098 kb on - strand at 855.169 kb on + strand at 855.170 kb on - strand at 855.170 kb on - strand at 855.225 kb on + strand at 855.226 kb on - strand at 855.226 kb on - strand at 855.324 kb on + strand at 855.325 kb on - strand at 855.337 kb on - strand at 855.341 kb on - strand at 855.341 kb on - strand at 855.427 kb on + strand at 855.504 kb on + strand, within CA264_03660 at 855.743 kb on - strand, within CA264_03660 at 855.824 kb on - strand, within CA264_03660 at 855.863 kb on - strand, within CA264_03660 at 855.863 kb on - strand, within CA264_03660 at 855.869 kb on + strand at 855.870 kb on - strand at 855.917 kb on + strand at 855.918 kb on - strand at 855.953 kb on + strand at 855.954 kb on - strand at 855.958 kb on + strand at 855.978 kb on - strand at 855.982 kb on + strand at 855.996 kb on + strand at 856.190 kb on + strand at 856.192 kb on + strand at 856.196 kb on + strand at 856.196 kb on + strand at 856.197 kb on - strand at 856.225 kb on - strand at 856.309 kb on - strand at 856.311 kb on + strand at 856.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 851,207 + CA264_03650 0.21 -1.1 851,271 - CA264_03650 0.26 -1.9 851,397 + CA264_03650 0.37 -0.9 851,398 - CA264_03650 0.37 -1.2 851,398 - CA264_03650 0.37 -0.5 851,402 + CA264_03650 0.38 -1.2 851,402 + CA264_03650 0.38 -1.0 851,621 - CA264_03650 0.57 -1.9 851,647 - CA264_03650 0.59 -1.9 851,712 - CA264_03650 0.65 -0.6 851,773 + CA264_03650 0.70 -1.3 851,774 - CA264_03650 0.70 -1.3 851,912 + CA264_03650 0.82 -1.8 851,912 + CA264_03650 0.82 -0.5 851,912 + CA264_03650 0.82 -3.0 851,912 + CA264_03650 0.82 -1.4 851,912 + CA264_03650 0.82 -1.6 851,913 - CA264_03650 0.82 -1.6 851,913 - CA264_03650 0.82 -1.3 851,913 - CA264_03650 0.82 -0.3 851,913 - CA264_03650 0.82 +0.5 851,913 - CA264_03650 0.82 -0.0 851,918 + CA264_03650 0.83 -2.1 851,918 + CA264_03650 0.83 -1.0 851,918 + CA264_03650 0.83 -0.3 851,919 - CA264_03650 0.83 -1.6 851,919 - CA264_03650 0.83 -1.9 851,919 - CA264_03650 0.83 -0.9 851,919 - CA264_03650 0.83 -2.2 851,919 - CA264_03650 0.83 -0.3 851,922 + CA264_03650 0.83 -2.0 851,922 + CA264_03650 0.83 -1.4 852,025 - -0.5 852,035 - -0.5 852,157 + -2.5 852,161 + -1.6 852,163 + -1.0 852,182 + -1.4 852,184 + -0.5 852,194 + -0.5 852,195 - -1.6 852,195 - +0.5 852,196 + -1.6 852,196 + -2.1 852,196 + -0.8 852,196 + -0.9 852,225 - -1.9 852,257 + -2.1 852,291 + -0.7 852,292 - -0.3 852,292 - -2.6 852,294 - -0.9 852,375 + -0.6 852,375 + -1.9 852,376 - -0.7 852,376 - -0.7 852,380 + -1.3 852,380 + -1.3 852,386 + -0.2 852,387 - -1.2 852,511 + CA264_03655 0.11 -0.9 852,616 - CA264_03655 0.15 -0.1 852,616 - CA264_03655 0.15 -1.5 852,627 + CA264_03655 0.15 -0.3 852,627 + CA264_03655 0.15 -0.9 852,627 + CA264_03655 0.15 -1.0 852,628 - CA264_03655 0.15 -2.9 852,628 - CA264_03655 0.15 -1.5 852,628 - CA264_03655 0.15 -2.0 852,719 + CA264_03655 0.18 -0.3 852,733 - CA264_03655 0.18 +0.2 852,756 - CA264_03655 0.19 -1.5 852,756 - CA264_03655 0.19 -1.0 852,894 - CA264_03655 0.23 +0.4 852,930 + CA264_03655 0.25 -1.5 852,930 + CA264_03655 0.25 -1.5 852,972 + CA264_03655 0.26 -1.6 853,064 + CA264_03655 0.29 -2.2 853,068 + CA264_03655 0.29 +0.3 853,068 + CA264_03655 0.29 -2.0 853,289 + CA264_03655 0.36 -2.0 853,314 - CA264_03655 0.37 -0.7 853,404 + CA264_03655 0.39 -1.6 853,405 - CA264_03655 0.39 -1.6 853,405 - CA264_03655 0.39 -1.0 853,405 - CA264_03655 0.39 -1.0 853,460 + CA264_03655 0.41 -1.9 853,586 + CA264_03655 0.45 -0.3 853,586 + CA264_03655 0.45 -1.4 853,586 + CA264_03655 0.45 -0.9 853,586 + CA264_03655 0.45 -1.1 853,586 + CA264_03655 0.45 -1.2 853,607 + CA264_03655 0.46 -1.6 853,613 - CA264_03655 0.46 -0.5 853,692 - CA264_03655 0.48 -1.9 853,736 - CA264_03655 0.50 -1.9 853,791 - CA264_03655 0.52 -1.4 853,791 - CA264_03655 0.52 -1.6 853,791 - CA264_03655 0.52 -1.4 853,794 + CA264_03655 0.52 -1.2 853,794 + CA264_03655 0.52 -0.0 853,795 - CA264_03655 0.52 -2.6 853,795 - CA264_03655 0.52 -1.5 853,795 - CA264_03655 0.52 -1.5 853,795 - CA264_03655 0.52 -0.3 853,812 - +1.7 853,839 - CA264_03655 0.53 -2.6 853,841 - CA264_03655 0.53 -1.4 853,844 + CA264_03655 0.53 -1.8 853,919 - CA264_03655 0.56 -1.3 853,947 - CA264_03655 0.56 -1.9 853,976 + CA264_03655 0.57 -1.4 853,998 - CA264_03655 0.58 -2.0 854,028 + CA264_03655 0.59 -1.3 854,028 + CA264_03655 0.59 -1.9 854,029 - CA264_03655 0.59 -0.6 854,097 - CA264_03655 0.61 -1.5 854,137 + CA264_03655 0.62 -2.0 854,295 + CA264_03655 0.67 -1.7 854,298 - CA264_03655 0.67 -1.1 854,339 - CA264_03655 0.69 -1.9 854,381 + CA264_03655 0.70 -2.1 854,382 - CA264_03655 0.70 -1.4 854,385 + CA264_03655 0.70 +1.7 854,385 + CA264_03655 0.70 -1.5 854,390 + CA264_03655 0.70 -1.1 854,391 - CA264_03655 0.70 -2.2 854,403 + CA264_03655 0.71 -0.3 854,403 + CA264_03655 0.71 -2.4 854,403 + CA264_03655 0.71 +0.2 854,404 - CA264_03655 0.71 -1.2 854,404 - CA264_03655 0.71 +0.5 854,461 + CA264_03655 0.73 -1.6 854,474 + CA264_03655 0.73 -1.8 854,474 + CA264_03655 0.73 -1.1 854,475 - CA264_03655 0.73 -1.5 854,475 - CA264_03655 0.73 -2.3 854,481 + CA264_03655 0.73 -2.2 854,481 + CA264_03655 0.73 -1.6 854,512 - CA264_03655 0.74 -0.8 854,512 - CA264_03655 0.74 -2.3 854,514 + CA264_03655 0.74 -1.5 854,514 + CA264_03655 0.74 -0.5 854,514 + CA264_03655 0.74 -2.2 854,514 + CA264_03655 0.74 -0.9 854,515 - CA264_03655 0.74 -1.0 854,515 - CA264_03655 0.74 -1.8 854,634 - CA264_03655 0.78 -1.6 854,649 + CA264_03655 0.78 -0.9 854,649 + CA264_03655 0.78 -0.7 854,650 - CA264_03655 0.78 -2.0 854,698 + CA264_03655 0.80 -1.5 854,698 + CA264_03655 0.80 -1.2 854,793 - CA264_03655 0.83 -0.6 854,794 + CA264_03655 0.83 -1.4 854,795 - CA264_03655 0.83 -0.8 854,795 - CA264_03655 0.83 -2.9 854,795 - CA264_03655 0.83 -2.1 854,800 + CA264_03655 0.83 -0.6 854,800 + CA264_03655 0.83 -3.1 854,800 + CA264_03655 0.83 -0.1 854,801 - CA264_03655 0.83 -2.6 854,801 - CA264_03655 0.83 -1.5 854,801 - CA264_03655 0.83 -1.6 854,801 - CA264_03655 0.83 -1.5 854,823 + CA264_03655 0.84 -1.6 854,824 - CA264_03655 0.84 -0.7 854,905 + CA264_03655 0.86 -0.8 854,906 - CA264_03655 0.86 -1.3 854,909 + CA264_03655 0.87 -0.7 854,942 + CA264_03655 0.88 +0.3 855,097 + -2.6 855,097 + -1.3 855,097 + -0.5 855,097 + -2.3 855,097 + -1.6 855,097 + -1.0 855,098 - -2.0 855,169 + -1.8 855,170 - -1.6 855,170 - +0.0 855,225 + -1.5 855,226 - -2.0 855,226 - -1.1 855,324 + -0.1 855,325 - -2.4 855,337 - -0.5 855,341 - -1.0 855,341 - -0.5 855,427 + -0.0 855,504 + CA264_03660 0.14 -0.5 855,743 - CA264_03660 0.64 -0.9 855,824 - CA264_03660 0.81 -0.7 855,863 - CA264_03660 0.90 -0.2 855,863 - CA264_03660 0.90 -1.2 855,869 + -0.6 855,870 - -0.8 855,917 + -0.6 855,918 - -0.4 855,953 + +0.7 855,954 - -0.8 855,958 + +0.1 855,978 - -1.0 855,982 + +0.6 855,996 + +0.6 856,190 + +1.5 856,192 + +0.2 856,196 + +0.1 856,196 + -0.3 856,197 - +0.3 856,225 - +1.5 856,309 - -0.7 856,311 + +0.1 856,330 - +0.1
Or see this region's nucleotide sequence