Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01675

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01670 and CA264_01675 are separated by 136 nucleotidesCA264_01675 and CA264_01680 are separated by 89 nucleotidesCA264_01680 and CA264_01685 are separated by 359 nucleotides CA264_01670: CA264_01670 - ABC transporter, at 392,255 to 394,132 _01670 CA264_01675: CA264_01675 - hypothetical protein, at 394,269 to 394,658 _01675 CA264_01680: CA264_01680 - RDD family protein, at 394,748 to 395,251 _01680 CA264_01685: CA264_01685 - glutamate racemase, at 395,611 to 396,426 _01685 Position (kb) 394 395Strain fitness (log2 ratio) -2 -1 0 1 2at 393.297 kb on + strand, within CA264_01670at 393.297 kb on + strand, within CA264_01670at 393.432 kb on + strand, within CA264_01670at 393.432 kb on + strand, within CA264_01670at 393.444 kb on + strand, within CA264_01670at 393.444 kb on + strand, within CA264_01670at 393.445 kb on - strand, within CA264_01670at 393.449 kb on - strand, within CA264_01670at 393.451 kb on - strand, within CA264_01670at 393.596 kb on - strand, within CA264_01670at 393.629 kb on + strand, within CA264_01670at 393.636 kb on - strand, within CA264_01670at 393.831 kb on + strand, within CA264_01670at 393.831 kb on + strand, within CA264_01670at 393.839 kb on + strand, within CA264_01670at 393.839 kb on + strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.953 kb on + strandat 393.954 kb on - strandat 393.954 kb on - strandat 394.106 kb on + strandat 394.121 kb on + strandat 394.125 kb on + strandat 394.256 kb on + strandat 394.347 kb on + strand, within CA264_01675at 394.347 kb on + strand, within CA264_01675at 394.348 kb on - strand, within CA264_01675at 394.349 kb on + strand, within CA264_01675at 394.356 kb on + strand, within CA264_01675at 394.356 kb on + strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.358 kb on + strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.400 kb on + strand, within CA264_01675at 394.401 kb on - strand, within CA264_01675at 394.401 kb on - strand, within CA264_01675at 394.495 kb on + strand, within CA264_01675at 394.515 kb on + strand, within CA264_01675at 394.516 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.529 kb on + strand, within CA264_01675at 394.563 kb on + strand, within CA264_01675at 394.597 kb on - strand, within CA264_01675at 394.618 kb on + strand, within CA264_01675at 394.618 kb on + strand, within CA264_01675at 394.619 kb on - strand, within CA264_01675at 394.623 kb on + strandat 394.623 kb on + strandat 394.623 kb on + strandat 394.659 kb on - strandat 394.662 kb on - strandat 394.728 kb on + strandat 394.749 kb on + strandat 394.866 kb on + strand, within CA264_01680at 394.933 kb on + strand, within CA264_01680at 394.978 kb on + strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 395.056 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.123 kb on + strand, within CA264_01680at 395.125 kb on + strand, within CA264_01680at 395.159 kb on + strand, within CA264_01680at 395.160 kb on - strand, within CA264_01680at 395.197 kb on - strand, within CA264_01680at 395.219 kb on - strandat 395.236 kb on + strandat 395.237 kb on - strandat 395.237 kb on - strandat 395.238 kb on + strandat 395.238 kb on + strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.269 kb on + strandat 395.270 kb on - strandat 395.281 kb on - strandat 395.293 kb on + strandat 395.293 kb on + strandat 395.293 kb on + strandat 395.306 kb on + strandat 395.306 kb on + strandat 395.307 kb on - strandat 395.344 kb on - strandat 395.374 kb on + strandat 395.392 kb on + strandat 395.543 kb on + strandat 395.557 kb on + strandat 395.561 kb on + strandat 395.562 kb on - strandat 395.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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393,297 + CA264_01670 0.55 -0.1
393,297 + CA264_01670 0.55 -1.0
393,432 + CA264_01670 0.63 +0.3
393,432 + CA264_01670 0.63 -0.5
393,444 + CA264_01670 0.63 -1.0
393,444 + CA264_01670 0.63 -0.6
393,445 - CA264_01670 0.63 +0.0
393,449 - CA264_01670 0.64 -0.3
393,451 - CA264_01670 0.64 -0.4
393,596 - CA264_01670 0.71 +0.0
393,629 + CA264_01670 0.73 -0.0
393,636 - CA264_01670 0.74 -1.0
393,831 + CA264_01670 0.84 -0.6
393,831 + CA264_01670 0.84 -0.5
393,839 + CA264_01670 0.84 -0.1
393,839 + CA264_01670 0.84 -0.7
393,885 - CA264_01670 0.87 -0.3
393,885 - CA264_01670 0.87 +0.7
393,885 - CA264_01670 0.87 +0.9
393,953 + -0.1
393,954 - -0.6
393,954 - -0.7
394,106 + +0.2
394,121 + +2.6
394,125 + -1.6
394,256 + -0.3
394,347 + CA264_01675 0.20 -0.1
394,347 + CA264_01675 0.20 -0.7
394,348 - CA264_01675 0.20 +1.8
394,349 + CA264_01675 0.21 -1.2
394,356 + CA264_01675 0.22 +2.3
394,356 + CA264_01675 0.22 -0.4
394,357 - CA264_01675 0.23 -0.3
394,357 - CA264_01675 0.23 +0.4
394,357 - CA264_01675 0.23 -0.2
394,358 + CA264_01675 0.23 +0.3
394,359 - CA264_01675 0.23 -0.5
394,359 - CA264_01675 0.23 -0.7
394,359 - CA264_01675 0.23 +0.1
394,400 + CA264_01675 0.34 +0.1
394,401 - CA264_01675 0.34 -0.4
394,401 - CA264_01675 0.34 -1.1
394,495 + CA264_01675 0.58 -0.0
394,515 + CA264_01675 0.63 -0.1
394,516 - CA264_01675 0.63 -0.1
394,527 - CA264_01675 0.66 +0.4
394,527 - CA264_01675 0.66 -0.0
394,527 - CA264_01675 0.66 -1.1
394,529 + CA264_01675 0.67 -0.6
394,563 + CA264_01675 0.75 -2.1
394,597 - CA264_01675 0.84 -0.6
394,618 + CA264_01675 0.89 -0.5
394,618 + CA264_01675 0.89 -0.0
394,619 - CA264_01675 0.90 -0.5
394,623 + -0.6
394,623 + -0.0
394,623 + -0.5
394,659 - +0.1
394,662 - -0.1
394,728 + +0.1
394,749 + +1.6
394,866 + CA264_01680 0.23 -1.5
394,933 + CA264_01680 0.37 +0.2
394,978 + CA264_01680 0.46 -0.7
394,979 - CA264_01680 0.46 -0.2
394,979 - CA264_01680 0.46 -0.2
394,979 - CA264_01680 0.46 -0.5
394,979 - CA264_01680 0.46 +0.2
394,980 + CA264_01680 0.46 -0.3
394,980 + CA264_01680 0.46 +0.7
394,980 + CA264_01680 0.46 -1.5
394,980 + CA264_01680 0.46 -0.4
394,980 + CA264_01680 0.46 -0.3
394,980 + CA264_01680 0.46 -0.0
394,980 + CA264_01680 0.46 -1.0
394,980 + CA264_01680 0.46 +0.4
394,981 - CA264_01680 0.46 +0.6
394,981 - CA264_01680 0.46 -0.0
394,981 - CA264_01680 0.46 +0.3
394,981 - CA264_01680 0.46 -0.0
394,983 + CA264_01680 0.47 -0.1
394,983 + CA264_01680 0.47 -0.3
395,056 + CA264_01680 0.61 -1.1
395,088 + CA264_01680 0.67 +0.3
395,088 + CA264_01680 0.67 -1.5
395,123 + CA264_01680 0.74 -0.1
395,125 + CA264_01680 0.75 -0.3
395,159 + CA264_01680 0.82 -1.1
395,160 - CA264_01680 0.82 -0.9
395,197 - CA264_01680 0.89 -0.2
395,219 - +0.0
395,236 + -0.8
395,237 - +0.4
395,237 - +0.1
395,238 + +0.7
395,238 + -0.7
395,239 - -0.3
395,239 - +0.2
395,239 - -0.2
395,239 - -0.3
395,269 + +0.3
395,270 - +0.1
395,281 - +0.2
395,293 + -0.3
395,293 + +0.4
395,293 + +1.1
395,306 + -0.3
395,306 + -0.6
395,307 - +0.1
395,344 - -0.3
395,374 + +0.1
395,392 + +0.6
395,543 + -0.3
395,557 + -0.3
395,561 + -0.1
395,562 - -0.2
395,610 + -1.0

Or see this region's nucleotide sequence