Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01175 and CA264_01180 are separated by 195 nucleotides CA264_01180 and CA264_01185 are separated by 14 nucleotides
CA264_01175: CA264_01175 - hypothetical protein, at 259,419 to 262,607
_01175
CA264_01180: CA264_01180 - hypothetical protein, at 262,803 to 263,207
_01180
CA264_01185: CA264_01185 - hypothetical protein, at 263,222 to 263,761
_01185
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.828 kb on + strand, within CA264_01175 at 261.829 kb on - strand, within CA264_01175 at 261.921 kb on + strand, within CA264_01175 at 261.941 kb on - strand, within CA264_01175 at 261.971 kb on + strand, within CA264_01175 at 261.972 kb on - strand, within CA264_01175 at 262.012 kb on + strand, within CA264_01175 at 262.055 kb on - strand, within CA264_01175 at 262.058 kb on - strand, within CA264_01175 at 262.082 kb on - strand, within CA264_01175 at 262.141 kb on - strand, within CA264_01175 at 262.240 kb on + strand, within CA264_01175 at 262.241 kb on - strand, within CA264_01175 at 262.241 kb on - strand, within CA264_01175 at 262.262 kb on - strand, within CA264_01175 at 262.262 kb on - strand, within CA264_01175 at 262.279 kb on + strand, within CA264_01175 at 262.280 kb on - strand, within CA264_01175 at 262.280 kb on - strand, within CA264_01175 at 262.345 kb on + strand at 262.378 kb on - strand at 262.474 kb on + strand at 262.495 kb on + strand at 262.495 kb on + strand at 262.495 kb on + strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.502 kb on - strand at 262.536 kb on + strand at 262.537 kb on - strand at 262.559 kb on + strand at 262.594 kb on - strand at 262.594 kb on - strand at 262.782 kb on - strand at 262.804 kb on + strand at 262.804 kb on + strand at 262.804 kb on + strand at 262.926 kb on + strand, within CA264_01180 at 262.930 kb on + strand, within CA264_01180 at 262.930 kb on + strand, within CA264_01180 at 262.931 kb on - strand, within CA264_01180 at 263.261 kb on - strand at 263.261 kb on - strand at 263.286 kb on + strand, within CA264_01185 at 263.326 kb on + strand, within CA264_01185 at 263.608 kb on + strand, within CA264_01185 at 263.609 kb on - strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.675 kb on + strand, within CA264_01185 at 263.675 kb on + strand, within CA264_01185 at 263.722 kb on - strand at 263.783 kb on + strand at 263.805 kb on - strand at 263.815 kb on - strand at 263.815 kb on - strand at 263.906 kb on - strand at 263.918 kb on - strand at 263.955 kb on + strand at 264.003 kb on - strand at 264.044 kb on + strand at 264.050 kb on + strand at 264.083 kb on + strand at 264.095 kb on + strand at 264.095 kb on + strand at 264.101 kb on + strand at 264.106 kb on - strand at 264.126 kb on + strand at 264.127 kb on - strand at 264.135 kb on - strand at 264.158 kb on + strand at 264.159 kb on - strand at 264.165 kb on + strand at 264.171 kb on + strand at 264.171 kb on + strand at 264.171 kb on + strand at 264.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 261,828 + CA264_01175 0.76 -0.3 261,829 - CA264_01175 0.76 +0.0 261,921 + CA264_01175 0.78 -0.3 261,941 - CA264_01175 0.79 -0.6 261,971 + CA264_01175 0.80 -0.2 261,972 - CA264_01175 0.80 +0.4 262,012 + CA264_01175 0.81 +0.2 262,055 - CA264_01175 0.83 +0.5 262,058 - CA264_01175 0.83 +0.0 262,082 - CA264_01175 0.84 +0.4 262,141 - CA264_01175 0.85 +0.1 262,240 + CA264_01175 0.88 -0.5 262,241 - CA264_01175 0.88 +0.1 262,241 - CA264_01175 0.88 +1.8 262,262 - CA264_01175 0.89 -0.3 262,262 - CA264_01175 0.89 -1.0 262,279 + CA264_01175 0.90 -0.1 262,280 - CA264_01175 0.90 +0.1 262,280 - CA264_01175 0.90 -0.8 262,345 + -0.7 262,378 - +0.0 262,474 + +0.5 262,495 + +0.0 262,495 + +0.7 262,495 + +0.2 262,496 - +0.9 262,496 - -0.1 262,496 - -1.9 262,496 - +0.0 262,496 - -0.5 262,502 - -0.7 262,536 + +0.4 262,537 - -0.5 262,559 + +1.0 262,594 - +0.0 262,594 - +0.0 262,782 - +0.8 262,804 + -0.1 262,804 + -0.4 262,804 + -2.2 262,926 + CA264_01180 0.30 +1.3 262,930 + CA264_01180 0.31 -0.3 262,930 + CA264_01180 0.31 -0.9 262,931 - CA264_01180 0.32 -0.5 263,261 - +0.2 263,261 - +1.0 263,286 + CA264_01185 0.12 +0.1 263,326 + CA264_01185 0.19 -0.6 263,608 + CA264_01185 0.71 +0.2 263,609 - CA264_01185 0.72 +0.0 263,673 + CA264_01185 0.84 -2.2 263,673 + CA264_01185 0.84 +0.2 263,673 + CA264_01185 0.84 -0.2 263,673 + CA264_01185 0.84 +2.0 263,673 + CA264_01185 0.84 -0.2 263,673 + CA264_01185 0.84 -0.0 263,673 + CA264_01185 0.84 -0.7 263,675 + CA264_01185 0.84 -0.0 263,675 + CA264_01185 0.84 -0.4 263,722 - -0.7 263,783 + +0.0 263,805 - +0.2 263,815 - -1.4 263,815 - +0.0 263,906 - +0.1 263,918 - -0.9 263,955 + +0.3 264,003 - +0.3 264,044 + -0.5 264,050 + +0.4 264,083 + -0.1 264,095 + +0.3 264,095 + -0.5 264,101 + -0.6 264,106 - +0.4 264,126 + +0.1 264,127 - +0.4 264,135 - +0.4 264,158 + -0.8 264,159 - -0.1 264,165 + -0.5 264,171 + -0.2 264,171 + +0.2 264,171 + -0.2 264,172 - +0.3
Or see this region's nucleotide sequence