Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00775 and CA264_00780 are separated by 127 nucleotides CA264_00780 and CA264_00785 are separated by 146 nucleotides CA264_00785 and CA264_00790 are separated by 103 nucleotides CA264_00790 and CA264_00795 are separated by 77 nucleotides
CA264_00775: CA264_00775 - hypothetical protein, at 166,465 to 167,307
_00775
CA264_00780: CA264_00780 - glyoxalase, at 167,435 to 167,833
_00780
CA264_00785: CA264_00785 - hypothetical protein, at 167,980 to 169,044
_00785
CA264_00790: CA264_00790 - hypothetical protein, at 169,148 to 169,693
_00790
CA264_00795: CA264_00795 - hypothetical protein, at 169,771 to 171,078
_00795
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.984 kb on + strand, within CA264_00775 at 166.984 kb on + strand, within CA264_00775 at 166.988 kb on + strand, within CA264_00775 at 166.989 kb on - strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.127 kb on - strand, within CA264_00775 at 167.281 kb on + strand at 167.281 kb on + strand at 167.293 kb on + strand at 167.294 kb on - strand at 167.310 kb on - strand at 167.313 kb on + strand at 167.314 kb on - strand at 167.318 kb on + strand at 167.332 kb on + strand at 167.333 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.337 kb on + strand at 167.399 kb on - strand at 167.468 kb on + strand at 167.514 kb on + strand, within CA264_00780 at 167.521 kb on + strand, within CA264_00780 at 167.577 kb on + strand, within CA264_00780 at 167.578 kb on - strand, within CA264_00780 at 167.667 kb on + strand, within CA264_00780 at 167.861 kb on + strand at 167.883 kb on - strand at 167.883 kb on - strand at 167.904 kb on + strand at 167.981 kb on + strand at 168.021 kb on - strand at 168.021 kb on - strand at 168.025 kb on + strand at 168.026 kb on - strand at 168.027 kb on + strand at 168.083 kb on + strand at 168.089 kb on + strand, within CA264_00785 at 168.089 kb on + strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.178 kb on + strand, within CA264_00785 at 168.224 kb on + strand, within CA264_00785 at 168.225 kb on - strand, within CA264_00785 at 168.302 kb on + strand, within CA264_00785 at 168.345 kb on + strand, within CA264_00785 at 168.448 kb on - strand, within CA264_00785 at 168.509 kb on + strand, within CA264_00785 at 168.535 kb on - strand, within CA264_00785 at 168.641 kb on + strand, within CA264_00785 at 168.641 kb on + strand, within CA264_00785 at 168.656 kb on + strand, within CA264_00785 at 168.656 kb on + strand, within CA264_00785 at 168.690 kb on - strand, within CA264_00785 at 168.734 kb on + strand, within CA264_00785 at 168.734 kb on + strand, within CA264_00785 at 168.735 kb on - strand, within CA264_00785 at 168.743 kb on + strand, within CA264_00785 at 168.744 kb on - strand, within CA264_00785 at 168.753 kb on + strand, within CA264_00785 at 168.800 kb on + strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.846 kb on + strand, within CA264_00785 at 168.866 kb on + strand, within CA264_00785 at 169.016 kb on - strand at 169.016 kb on - strand at 169.030 kb on - strand at 169.030 kb on - strand at 169.030 kb on - strand at 169.033 kb on + strand at 169.033 kb on + strand at 169.033 kb on + strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.123 kb on + strand at 169.123 kb on + strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.146 kb on - strand at 169.149 kb on + strand at 169.150 kb on - strand at 169.154 kb on + strand at 169.157 kb on + strand at 169.157 kb on + strand at 169.158 kb on - strand at 169.176 kb on - strand at 169.176 kb on - strand at 169.192 kb on + strand at 169.247 kb on + strand, within CA264_00790 at 169.286 kb on - strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.318 kb on - strand, within CA264_00790 at 169.327 kb on + strand, within CA264_00790 at 169.357 kb on - strand, within CA264_00790 at 169.427 kb on + strand, within CA264_00790 at 169.428 kb on - strand, within CA264_00790 at 169.454 kb on + strand, within CA264_00790 at 169.510 kb on - strand, within CA264_00790 at 169.559 kb on + strand, within CA264_00790 at 169.560 kb on - strand, within CA264_00790 at 169.572 kb on + strand, within CA264_00790 at 169.572 kb on + strand, within CA264_00790 at 169.573 kb on - strand, within CA264_00790 at 169.573 kb on - strand, within CA264_00790 at 169.607 kb on + strand, within CA264_00790 at 169.607 kb on + strand, within CA264_00790 at 169.678 kb on + strand at 169.714 kb on - strand at 169.717 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.722 kb on - strand at 169.722 kb on - strand at 169.722 kb on - strand at 169.726 kb on + strand at 169.727 kb on - strand at 169.727 kb on - strand at 169.728 kb on + strand at 169.728 kb on + strand at 169.728 kb on + strand at 169.729 kb on - strand at 169.729 kb on - strand at 169.730 kb on + strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.773 kb on - strand at 169.773 kb on - strand at 169.773 kb on - strand at 169.791 kb on - strand at 169.804 kb on - strand at 169.816 kb on + strand at 169.897 kb on + strand at 169.898 kb on - strand at 169.898 kb on - strand at 169.898 kb on - strand at 169.973 kb on + strand, within CA264_00795 at 169.979 kb on - strand, within CA264_00795 at 169.994 kb on + strand, within CA264_00795
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 166,984 + CA264_00775 0.62 -0.2 166,984 + CA264_00775 0.62 +0.6 166,988 + CA264_00775 0.62 +0.0 166,989 - CA264_00775 0.62 -0.4 167,122 + CA264_00775 0.78 -0.2 167,122 + CA264_00775 0.78 +0.8 167,127 - CA264_00775 0.79 -0.2 167,281 + +0.9 167,281 + -1.1 167,293 + -0.3 167,294 - -1.4 167,310 - -0.4 167,313 + -1.4 167,314 - +1.9 167,318 + -0.3 167,332 + +0.3 167,333 - +0.9 167,336 - -1.2 167,336 - -0.0 167,336 - +2.0 167,337 + +1.3 167,399 - +0.3 167,468 + -0.1 167,514 + CA264_00780 0.20 -0.0 167,521 + CA264_00780 0.22 -1.7 167,577 + CA264_00780 0.36 +1.1 167,578 - CA264_00780 0.36 +1.1 167,667 + CA264_00780 0.58 +0.3 167,861 + -0.2 167,883 - +0.7 167,883 - -0.4 167,904 + -0.6 167,981 + +0.0 168,021 - +0.1 168,021 - -0.5 168,025 + -0.5 168,026 - +0.1 168,027 + -0.1 168,083 + -0.4 168,089 + CA264_00785 0.10 -0.5 168,089 + CA264_00785 0.10 +1.3 168,168 - CA264_00785 0.18 -0.4 168,168 - CA264_00785 0.18 -0.1 168,178 + CA264_00785 0.19 -0.8 168,224 + CA264_00785 0.23 -0.4 168,225 - CA264_00785 0.23 +0.1 168,302 + CA264_00785 0.30 -0.0 168,345 + CA264_00785 0.34 -0.9 168,448 - CA264_00785 0.44 -0.1 168,509 + CA264_00785 0.50 -0.5 168,535 - CA264_00785 0.52 -0.1 168,641 + CA264_00785 0.62 +0.0 168,641 + CA264_00785 0.62 +0.2 168,656 + CA264_00785 0.63 -0.3 168,656 + CA264_00785 0.63 +0.1 168,690 - CA264_00785 0.67 -0.9 168,734 + CA264_00785 0.71 -1.5 168,734 + CA264_00785 0.71 -0.6 168,735 - CA264_00785 0.71 -0.3 168,743 + CA264_00785 0.72 +0.1 168,744 - CA264_00785 0.72 -0.0 168,753 + CA264_00785 0.73 +0.1 168,800 + CA264_00785 0.77 +0.3 168,837 - CA264_00785 0.80 -0.0 168,837 - CA264_00785 0.80 -0.1 168,837 - CA264_00785 0.80 -0.0 168,846 + CA264_00785 0.81 +0.2 168,866 + CA264_00785 0.83 +1.0 169,016 - -1.0 169,016 - +0.0 169,030 - -0.2 169,030 - -0.2 169,030 - -0.1 169,033 + +0.1 169,033 + -0.3 169,033 + -1.0 169,122 - -0.7 169,122 - -0.1 169,122 - +0.5 169,122 - +0.4 169,123 + +0.8 169,123 + -0.3 169,124 - +0.2 169,124 - +0.1 169,124 - +0.3 169,124 - -0.1 169,124 - -0.4 169,146 - -0.7 169,149 + -1.2 169,150 - -0.9 169,154 + -0.8 169,157 + -0.2 169,157 + +0.2 169,158 - +0.0 169,176 - -0.7 169,176 - +0.2 169,192 + -0.1 169,247 + CA264_00790 0.18 -0.2 169,286 - CA264_00790 0.25 -1.3 169,317 + CA264_00790 0.31 +0.9 169,317 + CA264_00790 0.31 -0.4 169,317 + CA264_00790 0.31 -0.1 169,318 - CA264_00790 0.31 -0.5 169,327 + CA264_00790 0.33 -0.2 169,357 - CA264_00790 0.38 +0.2 169,427 + CA264_00790 0.51 +0.3 169,428 - CA264_00790 0.51 -0.1 169,454 + CA264_00790 0.56 -0.0 169,510 - CA264_00790 0.66 -0.7 169,559 + CA264_00790 0.75 -0.3 169,560 - CA264_00790 0.75 +0.3 169,572 + CA264_00790 0.78 -0.1 169,572 + CA264_00790 0.78 +2.1 169,573 - CA264_00790 0.78 +0.4 169,573 - CA264_00790 0.78 -0.8 169,607 + CA264_00790 0.84 +0.0 169,607 + CA264_00790 0.84 +0.1 169,678 + -0.5 169,714 - +0.7 169,717 + +0.5 169,721 + -1.9 169,721 + -0.3 169,721 + +1.5 169,721 + +0.9 169,722 - -0.2 169,722 - +0.1 169,722 - -0.4 169,726 + -1.2 169,727 - -0.3 169,727 - -1.1 169,728 + +0.4 169,728 + +0.1 169,728 + +0.1 169,729 - -1.0 169,729 - -0.7 169,730 + -0.5 169,731 - -0.2 169,731 - -0.1 169,731 - -0.3 169,731 - +0.5 169,773 - -0.2 169,773 - -0.4 169,773 - +0.5 169,791 - +0.7 169,804 - -1.2 169,816 + +0.1 169,897 + -0.2 169,898 - +0.1 169,898 - +0.2 169,898 - +0.2 169,973 + CA264_00795 0.15 +0.5 169,979 - CA264_00795 0.16 -0.1 169,994 + CA264_00795 0.17 -0.1
Or see this region's nucleotide sequence