Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29930

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
6,658,390	+		PFLU_RS29925	0.11	+0.1
6,658,390	+		PFLU_RS29925	0.11	+0.3
6,658,391	-		PFLU_RS29925	0.12	-0.5
6,658,391	-		PFLU_RS29925	0.12	+0.3
6,658,391	-		PFLU_RS29925	0.12	-0.3
6,658,391	-		PFLU_RS29925	0.12	+0.7
6,658,391	-		PFLU_RS29925	0.12	+0.4
6,658,391	-		PFLU_RS29925	0.12	-0.5
6,658,393	+		PFLU_RS29925	0.12	+0.2
6,658,393	+		PFLU_RS29925	0.12	+0.6
6,658,394	-		PFLU_RS29925	0.12	+3.7
6,658,394	-		PFLU_RS29925	0.12	-1.3
6,658,516	+		PFLU_RS29925	0.24	-0.1
6,658,570	+		PFLU_RS29925	0.29	-2.2
6,658,570	+		PFLU_RS29925	0.29	-1.1
6,658,570	+		PFLU_RS29925	0.29	-0.0
6,658,570	+		PFLU_RS29925	0.29	+1.0
6,658,570	+		PFLU_RS29925	0.29	+0.9
6,658,570	+		PFLU_RS29925	0.29	+0.1
6,658,570	+		PFLU_RS29925	0.29	-0.6
6,658,570	+		PFLU_RS29925	0.29	-0.3
6,658,570	+		PFLU_RS29925	0.29	+0.9
6,658,570	+		PFLU_RS29925	0.29	-0.3
6,658,570	+		PFLU_RS29925	0.29	-1.3
6,658,570	+		PFLU_RS29925	0.29	+0.8
6,658,570	+		PFLU_RS29925	0.29	+0.2
6,658,570	+		PFLU_RS29925	0.29	-0.0
6,658,570	+		PFLU_RS29925	0.29	-1.9
6,658,570	+		PFLU_RS29925	0.29	-0.6
6,658,571	-		PFLU_RS29925	0.29	+1.1
6,658,571	-		PFLU_RS29925	0.29	-0.4
6,658,571	-		PFLU_RS29925	0.29	-1.9
6,658,571	-		PFLU_RS29925	0.29	-0.5
6,658,571	-		PFLU_RS29925	0.29	-0.2
6,658,571	-		PFLU_RS29925	0.29	+0.1
6,658,571	-		PFLU_RS29925	0.29	+0.5
6,658,571	-		PFLU_RS29925	0.29	+0.3
6,658,571	-		PFLU_RS29925	0.29	-0.4
6,658,571	-		PFLU_RS29925	0.29	-1.7
6,658,571	-		PFLU_RS29925	0.29	-0.6
6,658,571	-		PFLU_RS29925	0.29	-0.5
6,658,571	-		PFLU_RS29925	0.29	+1.0
6,658,571	-		PFLU_RS29925	0.29	+0.4
6,658,571	-		PFLU_RS29925	0.29	-0.8
6,658,571	-		PFLU_RS29925	0.29	-0.5
6,658,571	-		PFLU_RS29925	0.29	-0.0
6,658,571	-		PFLU_RS29925	0.29	+0.5
6,658,595	-		PFLU_RS29925	0.31	-1.9
6,658,595	-		PFLU_RS29925	0.31	+1.4
6,658,620	+		PFLU_RS29925	0.34	+0.6
6,658,621	-		PFLU_RS29925	0.34	-0.4
6,658,621	-		PFLU_RS29925	0.34	+0.3
6,658,707	-		PFLU_RS29925	0.42	+0.6
6,658,739	+		PFLU_RS29925	0.45	-0.8
6,658,740	-		PFLU_RS29925	0.45	-0.2
6,658,802	+		PFLU_RS29925	0.52	-1.1
6,658,802	+		PFLU_RS29925	0.52	-0.4
6,658,803	-		PFLU_RS29925	0.52	+1.6
6,658,803	-		PFLU_RS29925	0.52	+0.0
6,658,803	-		PFLU_RS29925	0.52	+2.8
6,658,912	+		PFLU_RS29925	0.62	+0.6
6,658,912	+		PFLU_RS29925	0.62	-0.6
6,658,912	+		PFLU_RS29925	0.62	+5.4
6,658,913	-		PFLU_RS29925	0.62	-1.7
6,658,913	-		PFLU_RS29925	0.62	+0.9
6,658,913	-		PFLU_RS29925	0.62	-0.8
6,658,913	-		PFLU_RS29925	0.62	+1.4
6,658,913	-		PFLU_RS29925	0.62	-0.7
6,658,913	-		PFLU_RS29925	0.62	-1.3
6,658,913	-		PFLU_RS29925	0.62	-0.1
6,658,913	-		PFLU_RS29925	0.62	+1.4
6,658,913	-		PFLU_RS29925	0.62	-0.2
6,658,913	-		PFLU_RS29925	0.62	-0.6
6,658,960	+		PFLU_RS29925	0.67	-1.3
6,658,960	+		PFLU_RS29925	0.67	-0.9
6,658,960	+		PFLU_RS29925	0.67	-0.0
6,658,960	+		PFLU_RS29925	0.67	+1.2
6,658,960	+		PFLU_RS29925	0.67	-1.9
6,658,960	+		PFLU_RS29925	0.67	+0.4
6,658,960	+		PFLU_RS29925	0.67	-0.6
6,658,960	+		PFLU_RS29925	0.67	+1.9
6,658,960	+		PFLU_RS29925	0.67	+0.8
6,658,960	+		PFLU_RS29925	0.67	-0.6
6,658,960	+		PFLU_RS29925	0.67	-1.6
6,658,960	+		PFLU_RS29925	0.67	+0.7
6,658,961	-		PFLU_RS29925	0.67	-0.2
6,658,961	-		PFLU_RS29925	0.67	-1.5
6,658,961	-		PFLU_RS29925	0.67	+0.3
6,658,961	-		PFLU_RS29925	0.67	+1.5
6,658,961	-		PFLU_RS29925	0.67	-1.6
6,658,961	-		PFLU_RS29925	0.67	+2.2
6,658,961	-		PFLU_RS29925	0.67	+1.0
6,658,961	-		PFLU_RS29925	0.67	+0.2
6,658,961	-		PFLU_RS29925	0.67	+0.6
6,658,961	-		PFLU_RS29925	0.67	-2.2
6,658,961	-		PFLU_RS29925	0.67	-0.3
6,658,961	-		PFLU_RS29925	0.67	-0.3
6,658,961	-		PFLU_RS29925	0.67	-0.3
6,658,961	-		PFLU_RS29925	0.67	-1.1
6,658,961	-		PFLU_RS29925	0.67	+1.9
6,658,961	-		PFLU_RS29925	0.67	+2.8
6,658,961	-		PFLU_RS29925	0.67	-0.2
6,659,093	+		PFLU_RS29925	0.80	+0.8
6,659,093	+		PFLU_RS29925	0.80	+0.0
6,659,094	-		PFLU_RS29925	0.80	-1.2
6,659,141	-		PFLU_RS29925	0.84	-0.3
6,659,156	+		PFLU_RS29925	0.86	+2.2
6,659,165	+		PFLU_RS29925	0.87	+1.4
6,659,165	+		PFLU_RS29925	0.87	+1.2
6,659,165	+		PFLU_RS29925	0.87	-0.7
6,659,165	+		PFLU_RS29925	0.87	+0.8
6,659,165	+		PFLU_RS29925	0.87	+0.1
6,659,165	+		PFLU_RS29925	0.87	+0.6
6,659,165	+		PFLU_RS29925	0.87	+1.4
6,659,165	+		PFLU_RS29925	0.87	-0.5
6,659,165	+		PFLU_RS29925	0.87	+0.4
6,659,165	+		PFLU_RS29925	0.87	+0.5
6,659,165	+		PFLU_RS29925	0.87	+1.5
6,659,166	-		PFLU_RS29925	0.87	-1.3
6,659,166	-		PFLU_RS29925	0.87	+0.6
6,659,166	-		PFLU_RS29925	0.87	+1.1
6,659,166	-		PFLU_RS29925	0.87	-0.5
6,659,166	-		PFLU_RS29925	0.87	+0.5
6,659,166	-		PFLU_RS29925	0.87	-1.7
6,659,166	-		PFLU_RS29925	0.87	+0.3
6,659,166	-		PFLU_RS29925	0.87	+1.1
6,659,168	+		PFLU_RS29925	0.87	+1.0
6,659,168	+		PFLU_RS29925	0.87	+0.1
6,659,169	-		PFLU_RS29925	0.87	-2.8
6,659,169	-		PFLU_RS29925	0.87	+0.7
6,659,169	-		PFLU_RS29925	0.87	+0.4
6,659,215	+				-2.0
6,659,215	+				+0.5
6,659,215	+				+0.3
6,659,215	+				-0.0
6,659,216	-				-0.5
6,659,216	-				+0.4
6,659,216	-				+0.0
6,659,289	+				+1.0
6,659,289	+				+1.9
6,659,290	-				-0.0
6,659,290	-				-0.7
6,659,327	+				+1.3
6,659,328	-				-0.6
6,659,328	-				+0.4
6,659,328	-				+0.5
6,659,328	-				-2.0
6,659,342	-				+0.3
6,659,345	-				-0.1
6,659,345	-				+0.5
6,659,377	+				+0.2
6,659,377	+				+1.4
6,659,377	+				-1.1
6,659,378	-				+0.1
6,659,383	+				+1.4
6,659,383	+				+0.7
6,659,383	+				+0.5
6,659,383	+				-0.4
6,659,383	+				+1.0
6,659,383	+				-0.7
6,659,384	-				+0.7
6,659,384	-				-0.3
6,659,384	-				+0.2
6,659,384	-				-0.5
6,659,384	-				-1.0
6,659,412	+				+1.4
6,659,413	-				+0.1
6,659,413	-				+2.2
6,659,413	-				+0.3
6,659,413	-				-1.5
6,659,461	+				+1.1
6,659,461	+				+1.9
6,659,462	-				+1.0
6,659,462	-				+0.1
6,659,462	-				-0.6
6,659,499	+		PFLU_RS29930	0.13	+0.1
6,659,661	+		PFLU_RS29930	0.32	+1.3
6,659,661	+		PFLU_RS29930	0.32	+1.7
6,659,662	-		PFLU_RS29930	0.32	+0.4
6,659,662	-		PFLU_RS29930	0.32	+0.1
6,659,713	-		PFLU_RS29930	0.38	+0.5
6,659,713	-		PFLU_RS29930	0.38	-0.6
6,659,713	-		PFLU_RS29930	0.38	+0.3
6,659,713	-		PFLU_RS29930	0.38	+0.6
6,659,923	+		PFLU_RS29930	0.62	+1.6
6,659,923	+		PFLU_RS29930	0.62	-1.6
6,659,923	+		PFLU_RS29930	0.62	-1.7
6,659,923	+		PFLU_RS29930	0.62	+0.8
6,659,923	+		PFLU_RS29930	0.62	+0.4
6,659,923	+		PFLU_RS29930	0.62	+0.5
6,659,923	+		PFLU_RS29930	0.62	-0.2
6,659,924	-		PFLU_RS29930	0.62	-0.1
6,659,924	-		PFLU_RS29930	0.62	+1.4
6,659,924	-		PFLU_RS29930	0.62	-0.6
6,659,924	-		PFLU_RS29930	0.62	-0.6
6,660,110	-		PFLU_RS29930	0.83	+0.3
6,660,297	+				+0.2
6,660,297	+				+0.8
6,660,298	-				+0.9
6,660,298	-				+1.1
6,660,306	-				+0.5
6,660,316	+				+0.5
6,660,316	+				+0.8
6,660,316	+				+0.6
6,660,316	+				-2.7
6,660,316	+				+0.7
6,660,316	+				+0.6
6,660,317	-				-0.1
6,660,317	-				-1.2
6,660,317	-				+1.1
6,660,317	-				+0.9
6,660,317	-				+0.0
6,660,317	-				+0.3
6,660,318	+				+0.2
6,660,318	+				+0.5
6,660,318	+				-0.5
6,660,319	-				+0.7
6,660,319	-				-0.8
6,660,319	-				+1.4
6,660,319	-				-1.3
6,660,340	+				+0.0
6,660,340	+				+1.2
6,660,340	+				+0.4
6,660,340	+				-0.2
6,660,340	+				+0.7
6,660,340	+				-0.1
6,660,341	-				+1.4
6,660,341	-				-0.5
6,660,341	-				+1.4
6,660,341	-				+0.7
6,660,341	-				+0.7
6,660,341	-				-0.6
6,660,341	-				+0.2
6,660,341	-				+1.4
6,660,341	-				-2.9
6,660,341	-				+0.0
6,660,578	+		PFLU_RS29935	0.52	-1.1
6,660,578	+		PFLU_RS29935	0.52	+0.9
6,660,578	+		PFLU_RS29935	0.52	+0.4
6,660,578	+		PFLU_RS29935	0.52	+0.4
6,660,578	+		PFLU_RS29935	0.52	-0.2
6,660,578	+		PFLU_RS29935	0.52	+0.4
6,660,578	+		PFLU_RS29935	0.52	-1.9
6,660,578	+		PFLU_RS29935	0.52	+0.8
6,660,578	+		PFLU_RS29935	0.52	+1.8
6,660,578	+		PFLU_RS29935	0.52	+0.4
6,660,578	+		PFLU_RS29935	0.52	+1.0
6,660,579	-		PFLU_RS29935	0.52	+1.2
6,660,579	-		PFLU_RS29935	0.52	-0.0
6,660,579	-		PFLU_RS29935	0.52	+1.2
6,660,579	-		PFLU_RS29935	0.52	+0.4
6,660,579	-		PFLU_RS29935	0.52	-0.3
6,660,579	-		PFLU_RS29935	0.52	-3.0
6,660,579	-		PFLU_RS29935	0.52	+0.3
6,660,579	-		PFLU_RS29935	0.52	-0.7
6,660,579	-		PFLU_RS29935	0.52	+1.8
6,660,579	-		PFLU_RS29935	0.52	-0.5
6,660,579	-		PFLU_RS29935	0.52	+0.0
6,660,579	-		PFLU_RS29935	0.52	-0.1
6,660,579	-		PFLU_RS29935	0.52	+0.7
6,660,582	+		PFLU_RS29935	0.53	+0.5
6,660,582	+		PFLU_RS29935	0.53	-0.7
6,660,582	+		PFLU_RS29935	0.53	-0.8
6,660,582	+		PFLU_RS29935	0.53	+1.4
6,660,582	+		PFLU_RS29935	0.53	+0.2
6,660,583	-		PFLU_RS29935	0.53	-0.7
6,660,583	-		PFLU_RS29935	0.53	+0.0
6,660,583	-		PFLU_RS29935	0.53	-1.1
6,660,583	-		PFLU_RS29935	0.53	+1.4
6,660,583	-		PFLU_RS29935	0.53	-0.3
6,660,583	-		PFLU_RS29935	0.53	-0.8
6,661,188	+		PFLU_RS29940	0.44	-0.2