Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS26375

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,899,697	+		PFLU_RS26370	0.63	+0.2
5,899,995	-		PFLU_RS26370	0.79	-0.5
5,900,053	+		PFLU_RS26370	0.82	-0.3
5,900,054	-		PFLU_RS26370	0.82	-0.4
5,900,054	-		PFLU_RS26370	0.82	-0.1
5,900,054	-		PFLU_RS26370	0.82	-1.8
5,900,054	-		PFLU_RS26370	0.82	+1.4
5,900,223	+				-0.8
5,900,224	-				-0.2
5,900,224	-				-0.5
5,900,224	-				-1.0
5,900,224	-				-1.5
5,900,224	-				+0.0
5,900,253	+				-1.5
5,900,253	+				+0.9
5,900,254	-				-0.3
5,900,276	+				-0.8
5,900,276	+				+0.0
5,900,276	+				+1.2
5,900,276	+				+0.5
5,900,277	-				-0.8
5,900,277	-				+1.1
5,900,277	-				+0.3
5,900,277	-				+0.6
5,900,277	-				-0.4
5,900,277	-				+0.5
5,900,277	-				+1.5
5,900,279	+				+1.7
5,900,279	+				+0.4
5,900,279	+				+1.0
5,900,279	+				-0.3
5,900,279	+				+0.5
5,900,279	+				-1.5
5,900,279	+				+0.9
5,900,280	-				+0.2
5,900,280	-				-0.3
5,900,280	-				+0.1
5,900,280	-				+0.3
5,900,379	+				+1.8
5,900,379	+				+1.9
5,900,379	+				+1.0
5,900,380	-				+0.1
5,900,380	-				-0.8
5,900,380	-				-1.4
5,900,380	-				+0.0
5,900,422	-				-0.4
5,900,422	-				+0.9
5,900,422	-				-2.0
5,900,422	-				-2.1
5,900,422	-				+0.0
5,900,422	-				+0.6
5,900,422	-				-2.4
5,900,425	+				-0.4
5,900,426	-				+0.7
5,900,435	+				+0.7
5,900,436	-				-1.8
5,900,436	-				+1.5
5,900,507	+				+0.8
5,900,507	+				-1.0
5,900,508	-				-1.2
5,900,585	-				+1.0
5,900,754	+		PFLU_RS26375	0.11	-0.5
5,900,754	+		PFLU_RS26375	0.11	+0.2
5,900,754	+		PFLU_RS26375	0.11	-0.7
5,900,754	+		PFLU_RS26375	0.11	-2.5
5,900,754	+		PFLU_RS26375	0.11	-0.1
5,900,754	+		PFLU_RS26375	0.11	-0.7
5,900,754	+		PFLU_RS26375	0.11	-0.0
5,900,755	-		PFLU_RS26375	0.11	-0.2
5,900,755	-		PFLU_RS26375	0.11	+1.5
5,900,755	-		PFLU_RS26375	0.11	-1.1
5,900,755	-		PFLU_RS26375	0.11	-1.4
5,900,755	-		PFLU_RS26375	0.11	-0.1
5,900,755	-		PFLU_RS26375	0.11	+3.2
5,900,755	-		PFLU_RS26375	0.11	-1.2
5,900,827	-		PFLU_RS26375	0.16	+1.4
5,900,933	-		PFLU_RS26375	0.24	+0.4
5,900,990	+		PFLU_RS26375	0.28	-0.3
5,901,005	+		PFLU_RS26375	0.29	-1.9
5,901,006	-		PFLU_RS26375	0.29	-3.1
5,901,240	+		PFLU_RS26375	0.47	+1.2
5,901,240	+		PFLU_RS26375	0.47	-1.0
5,901,240	+		PFLU_RS26375	0.47	-1.4
5,901,240	+		PFLU_RS26375	0.47	-0.2
5,901,241	-		PFLU_RS26375	0.47	-1.2
5,901,241	-		PFLU_RS26375	0.47	+0.4
5,901,241	-		PFLU_RS26375	0.47	-0.1
5,901,241	-		PFLU_RS26375	0.47	+0.5
5,901,241	-		PFLU_RS26375	0.47	-2.5
5,901,243	+		PFLU_RS26375	0.47	-0.4
5,901,243	+		PFLU_RS26375	0.47	+0.3
5,901,243	+		PFLU_RS26375	0.47	+0.4
5,901,243	+		PFLU_RS26375	0.47	-2.1
5,901,243	+		PFLU_RS26375	0.47	+1.7
5,901,243	+		PFLU_RS26375	0.47	+1.0
5,901,243	+		PFLU_RS26375	0.47	-0.1
5,901,243	+		PFLU_RS26375	0.47	+1.7
5,901,243	+		PFLU_RS26375	0.47	+0.4
5,901,243	+		PFLU_RS26375	0.47	-1.1
5,901,243	+		PFLU_RS26375	0.47	-0.5
5,901,243	+		PFLU_RS26375	0.47	+1.5
5,901,243	+		PFLU_RS26375	0.47	+0.0
5,901,243	+		PFLU_RS26375	0.47	+0.4
5,901,243	+		PFLU_RS26375	0.47	+0.6
5,901,243	+		PFLU_RS26375	0.47	+0.7
5,901,244	-		PFLU_RS26375	0.47	-1.9
5,901,244	-		PFLU_RS26375	0.47	-0.7
5,901,244	-		PFLU_RS26375	0.47	+1.4
5,901,244	-		PFLU_RS26375	0.47	-0.8
5,901,288	+		PFLU_RS26375	0.51	+0.3
5,901,288	+		PFLU_RS26375	0.51	+0.0
5,901,289	-		PFLU_RS26375	0.51	+0.3
5,901,379	-		PFLU_RS26375	0.57	-0.0
5,901,408	+		PFLU_RS26375	0.60	+0.3
5,901,408	+		PFLU_RS26375	0.60	+0.0
5,901,408	+		PFLU_RS26375	0.60	-0.6
5,901,409	-		PFLU_RS26375	0.60	+1.1
5,901,409	-		PFLU_RS26375	0.60	+1.6
5,901,409	-		PFLU_RS26375	0.60	-1.1
5,901,409	-		PFLU_RS26375	0.60	+1.0
5,901,409	-		PFLU_RS26375	0.60	+0.3
5,901,409	-		PFLU_RS26375	0.60	+0.7
5,901,414	+		PFLU_RS26375	0.60	-0.3
5,901,415	-		PFLU_RS26375	0.60	+1.0
5,901,415	-		PFLU_RS26375	0.60	-1.7
5,901,415	-		PFLU_RS26375	0.60	-1.5
5,901,444	+		PFLU_RS26375	0.62	+0.9
5,901,444	+		PFLU_RS26375	0.62	-1.3
5,901,444	+		PFLU_RS26375	0.62	+0.0
5,901,444	+		PFLU_RS26375	0.62	+0.8
5,901,444	+		PFLU_RS26375	0.62	-1.3
5,901,444	+		PFLU_RS26375	0.62	-1.1
5,901,444	+		PFLU_RS26375	0.62	-1.3
5,901,444	+		PFLU_RS26375	0.62	+1.3
5,901,444	+		PFLU_RS26375	0.62	+0.2
5,901,444	+		PFLU_RS26375	0.62	+1.3
5,901,444	+		PFLU_RS26375	0.62	+0.5
5,901,445	-		PFLU_RS26375	0.62	+1.5
5,901,445	-		PFLU_RS26375	0.62	+0.5
5,901,445	-		PFLU_RS26375	0.62	-0.9
5,901,445	-		PFLU_RS26375	0.62	+0.3
5,901,445	-		PFLU_RS26375	0.62	-0.2
5,901,445	-		PFLU_RS26375	0.62	-1.1
5,901,445	-		PFLU_RS26375	0.62	+0.2
5,901,445	-		PFLU_RS26375	0.62	-2.3
5,901,445	-		PFLU_RS26375	0.62	+0.4
5,901,445	-		PFLU_RS26375	0.62	-0.6
5,901,445	-		PFLU_RS26375	0.62	+1.7
5,901,445	-		PFLU_RS26375	0.62	+0.0
5,901,445	-		PFLU_RS26375	0.62	-2.3
5,901,445	-		PFLU_RS26375	0.62	-0.9
5,901,496	-		PFLU_RS26375	0.66	+0.1
5,901,583	+		PFLU_RS26375	0.73	+0.5
5,901,584	-		PFLU_RS26375	0.73	-3.3
5,901,584	-		PFLU_RS26375	0.73	-1.4
5,901,732	+		PFLU_RS26375	0.84	-0.4
5,901,732	+		PFLU_RS26375	0.84	-1.2
5,901,732	+		PFLU_RS26375	0.84	+0.7
5,901,732	+		PFLU_RS26375	0.84	+0.5
5,901,733	-		PFLU_RS26375	0.84	-1.9
5,901,733	-		PFLU_RS26375	0.84	-0.8
5,901,733	-		PFLU_RS26375	0.84	+0.5
5,901,733	-		PFLU_RS26375	0.84	+0.5
5,901,733	-		PFLU_RS26375	0.84	-0.6
5,901,733	-		PFLU_RS26375	0.84	-1.0
5,901,755	+		PFLU_RS26375	0.86	+0.6
5,901,755	+		PFLU_RS26375	0.86	-0.5
5,901,755	+		PFLU_RS26375	0.86	+0.3
5,901,756	-		PFLU_RS26375	0.86	+0.6
5,901,756	-		PFLU_RS26375	0.86	+0.2
5,901,798	-		PFLU_RS26375	0.89	+1.2
5,901,849	+				-1.3
5,901,849	+				+0.6
5,901,849	+				-0.4
5,901,849	+				+1.4
5,901,849	+				+0.8
5,901,849	+				-1.0
5,901,849	+				+0.8
5,901,849	+				+2.8
5,901,849	+				-0.5
5,901,849	+				+0.4
5,901,849	+				-2.0
5,901,849	+				-0.0
5,901,849	+				-0.8
5,901,849	+				+1.2
5,901,849	+				-1.7
5,901,849	+				+0.0
5,901,849	+				+1.6
5,901,849	+				-1.0
5,901,849	+				+0.5
5,901,849	+				-0.5
5,901,850	-				-1.7
5,901,850	-				+1.6
5,901,850	-				-2.3
5,901,850	-				-1.4
5,901,850	-				+1.1
5,901,850	-				+0.7
5,901,850	-				-1.2
5,901,850	-				-0.9
5,901,850	-				-0.3
5,901,850	-				-0.4
5,901,850	-				-0.1
5,901,850	-				-0.4
5,901,850	-				+1.3
5,901,850	-				-1.5
5,901,850	-				-0.3
5,901,850	-				+0.8
5,901,850	-				-0.5
5,901,850	-				+1.1
5,901,882	+				-0.9
5,901,882	+				+1.0
5,901,882	+				-0.2
5,901,882	+				-2.0
5,901,882	+				-1.2
5,901,882	+				+1.1
5,901,882	+				+0.5
5,901,882	+				+0.2
5,901,882	+				+0.1
5,901,882	+				-1.5
5,901,882	+				-0.8
5,901,882	+				-0.2
5,901,883	-				+0.1
5,901,883	-				-0.1
5,901,883	-				+0.2
5,901,883	-				+0.4
5,901,883	-				-0.7
5,901,883	-				-1.8
5,901,883	-				-1.6
5,901,883	-				-0.2
5,901,883	-				+0.9
5,901,883	-				-0.2
5,901,883	-				+0.0
5,901,906	+				+0.5
5,901,906	+				-0.4
5,901,906	+				+1.1
5,901,907	-				-1.3
5,901,907	-				+0.3
5,901,907	-				+0.2
5,901,907	-				+0.1
5,901,907	-				-0.1
5,901,907	-				-1.9
5,901,907	-				+0.4
5,901,907	-				+1.3
5,901,907	-				-0.3
5,901,907	-				-0.2
5,901,937	+				+0.6
5,901,937	+				-0.2
5,901,937	+				-0.1
5,901,937	+				+1.0
5,901,937	+				+1.0
5,901,962	+				+0.4
5,901,962	+				+0.3
5,901,962	+				-1.0
5,901,963	-				-0.6
5,901,963	-				+2.2
5,901,963	-				-2.5
5,902,044	+				-1.3
5,902,044	+				-1.2
5,902,044	+				+0.4
5,902,045	-				+0.0
5,902,045	-				+0.2
5,902,094	+		PFLU_RS26380	0.15	-0.5
5,902,254	+		PFLU_RS26380	0.33	+0.4
5,902,254	+		PFLU_RS26380	0.33	-1.0
5,902,255	-		PFLU_RS26380	0.33	-2.0
5,902,255	-		PFLU_RS26380	0.33	-0.2
5,902,255	-		PFLU_RS26380	0.33	-0.1
5,902,255	-		PFLU_RS26380	0.33	+0.2
5,902,302	+		PFLU_RS26380	0.39	+1.1
5,902,302	+		PFLU_RS26380	0.39	-0.1
5,902,302	+		PFLU_RS26380	0.39	+1.2
5,902,302	+		PFLU_RS26380	0.39	+1.3
5,902,302	+		PFLU_RS26380	0.39	-0.3
5,902,302	+		PFLU_RS26380	0.39	+0.7
5,902,303	-		PFLU_RS26380	0.39	+1.2
5,902,328	+		PFLU_RS26380	0.42	+2.5
5,902,328	+		PFLU_RS26380	0.42	-0.8
5,902,328	+		PFLU_RS26380	0.42	-1.5
5,902,329	-		PFLU_RS26380	0.42	+1.4
5,902,329	-		PFLU_RS26380	0.42	+0.1
5,902,329	-		PFLU_RS26380	0.42	-0.3
5,902,544	+		PFLU_RS26380	0.66	+0.6
5,902,544	+		PFLU_RS26380	0.66	-0.0
5,902,544	+		PFLU_RS26380	0.66	-0.2
5,902,544	+		PFLU_RS26380	0.66	-0.6
5,902,544	+		PFLU_RS26380	0.66	-1.0
5,902,544	+		PFLU_RS26380	0.66	-1.3
5,902,544	+		PFLU_RS26380	0.66	-0.1
5,902,544	+		PFLU_RS26380	0.66	+0.9
5,902,544	+		PFLU_RS26380	0.66	+0.4
5,902,544	+		PFLU_RS26380	0.66	+0.5
5,902,544	+		PFLU_RS26380	0.66	-0.4
5,902,544	+		PFLU_RS26380	0.66	-1.4
5,902,544	+		PFLU_RS26380	0.66	+0.5
5,902,544	+		PFLU_RS26380	0.66	+0.3
5,902,544	+		PFLU_RS26380	0.66	+0.5
5,902,544	+		PFLU_RS26380	0.66	-2.0
5,902,544	+		PFLU_RS26380	0.66	+0.7
5,902,544	+		PFLU_RS26380	0.66	+0.4
5,902,545	-		PFLU_RS26380	0.66	-0.0
5,902,545	-		PFLU_RS26380	0.66	+0.8
5,902,545	-		PFLU_RS26380	0.66	+0.4
5,902,545	-		PFLU_RS26380	0.66	+0.4
5,902,545	-		PFLU_RS26380	0.66	-1.5
5,902,545	-		PFLU_RS26380	0.66	-0.4
5,902,545	-		PFLU_RS26380	0.66	-0.5
5,902,545	-		PFLU_RS26380	0.66	+0.5
5,902,545	-		PFLU_RS26380	0.66	-0.4
5,902,545	-		PFLU_RS26380	0.66	+0.4
5,902,545	-		PFLU_RS26380	0.66	-0.2
5,902,545	-		PFLU_RS26380	0.66	+0.4
5,902,545	-		PFLU_RS26380	0.66	-1.2
5,902,545	-		PFLU_RS26380	0.66	+1.2
5,902,545	-		PFLU_RS26380	0.66	+0.7
5,902,545	-		PFLU_RS26380	0.66	+0.4
5,902,545	-		PFLU_RS26380	0.66	-0.9
5,902,545	-		PFLU_RS26380	0.66	+1.0
5,902,545	-		PFLU_RS26380	0.66	+0.5
5,902,545	-		PFLU_RS26380	0.66	-0.5
5,902,545	-		PFLU_RS26380	0.66	+0.5
5,902,545	-		PFLU_RS26380	0.66	+0.4
5,902,545	-		PFLU_RS26380	0.66	+0.8
5,902,545	-		PFLU_RS26380	0.66	-0.8
5,902,545	-		PFLU_RS26380	0.66	-0.2
5,902,545	-		PFLU_RS26380	0.66	-0.4
5,902,545	-		PFLU_RS26380	0.66	-0.9
5,902,545	-		PFLU_RS26380	0.66	+0.5
5,902,545	-		PFLU_RS26380	0.66	-2.7
5,902,545	-		PFLU_RS26380	0.66	-0.8
5,902,545	-		PFLU_RS26380	0.66	+3.1
5,902,545	-		PFLU_RS26380	0.66	-1.4
5,902,545	-		PFLU_RS26380	0.66	+0.5
5,902,545	-		PFLU_RS26380	0.66	-1.1
5,902,545	-		PFLU_RS26380	0.66	-1.1
5,902,545	-		PFLU_RS26380	0.66	+0.6
5,902,545	-		PFLU_RS26380	0.66	-0.3
5,902,631	-		PFLU_RS26380	0.76	+1.0
5,902,689	-		PFLU_RS26380	0.83	+0.1
5,902,689	-		PFLU_RS26380	0.83	+1.2
5,902,718	+		PFLU_RS26380	0.86	-0.9
5,902,718	+		PFLU_RS26380	0.86	+1.1
5,902,733	+		PFLU_RS26380	0.88	+0.3
5,902,733	+		PFLU_RS26380	0.88	+0.4
5,902,733	+		PFLU_RS26380	0.88	+0.6
5,902,733	+		PFLU_RS26380	0.88	+0.4
5,902,733	+		PFLU_RS26380	0.88	+0.4
5,902,733	+		PFLU_RS26380	0.88	+0.7
5,902,777	+				-2.9
5,902,778	-				+0.0
5,902,778	-				+0.2
5,902,828	-				-0.3
5,902,906	-				-3.1
5,902,906	-				-1.7
5,902,906	-				-2.9
5,902,906	-				-1.6
5,902,938	-				-1.0