Experiment: NAG (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25395 and PFLU_RS25400 are separated by 252 nucleotides PFLU_RS25400 and PFLU_RS25405 are separated by 123 nucleotides PFLU_RS25405 and PFLU_RS25410 are separated by 29 nucleotides
PFLU_RS25395: PFLU_RS25395 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 5,668,988 to 5,669,605
_RS25395
PFLU_RS25400: PFLU_RS25400 - methyl-accepting chemotaxis protein, at 5,669,858 to 5,671,777
_RS25400
PFLU_RS25405: PFLU_RS25405 - VOC family protein, at 5,671,901 to 5,672,269
_RS25405
PFLU_RS25410: PFLU_RS25410 - D-aminoacylase, at 5,672,299 to 5,673,762
_RS25410
Position (kb) 5669
5670
5671
5672 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5668.989 kb on + strand at 5668.989 kb on + strand at 5668.989 kb on + strand at 5668.990 kb on - strand at 5668.990 kb on - strand at 5668.990 kb on - strand at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.184 kb on + strand, within PFLU_RS25395 at 5669.184 kb on + strand, within PFLU_RS25395 at 5669.233 kb on + strand, within PFLU_RS25395 at 5669.233 kb on + strand, within PFLU_RS25395 at 5669.234 kb on - strand, within PFLU_RS25395 at 5669.562 kb on + strand at 5669.562 kb on + strand at 5669.594 kb on - strand at 5669.622 kb on - strand at 5669.622 kb on - strand at 5669.622 kb on - strand at 5669.654 kb on + strand at 5669.671 kb on + strand at 5669.672 kb on - strand at 5669.672 kb on - strand at 5669.672 kb on - strand at 5669.752 kb on + strand at 5669.752 kb on + strand at 5669.753 kb on - strand at 5669.753 kb on - strand at 5669.753 kb on - strand at 5669.753 kb on - strand at 5669.790 kb on + strand at 5669.791 kb on - strand at 5669.791 kb on - strand at 5669.791 kb on - strand at 5669.987 kb on - strand at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.053 kb on + strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.054 kb on - strand, within PFLU_RS25400 at 5670.093 kb on + strand, within PFLU_RS25400 at 5670.093 kb on + strand, within PFLU_RS25400 at 5670.093 kb on + strand, within PFLU_RS25400 at 5670.094 kb on - strand, within PFLU_RS25400 at 5670.094 kb on - strand, within PFLU_RS25400 at 5670.094 kb on - strand, within PFLU_RS25400 at 5670.094 kb on - strand, within PFLU_RS25400 at 5670.237 kb on - strand, within PFLU_RS25400 at 5670.237 kb on - strand, within PFLU_RS25400 at 5670.241 kb on + strand, within PFLU_RS25400 at 5670.404 kb on + strand, within PFLU_RS25400 at 5670.419 kb on + strand, within PFLU_RS25400 at 5670.420 kb on - strand, within PFLU_RS25400 at 5670.420 kb on - strand, within PFLU_RS25400 at 5670.420 kb on - strand, within PFLU_RS25400 at 5670.420 kb on - strand, within PFLU_RS25400 at 5670.478 kb on + strand, within PFLU_RS25400 at 5670.479 kb on - strand, within PFLU_RS25400 at 5670.479 kb on - strand, within PFLU_RS25400 at 5670.479 kb on - strand, within PFLU_RS25400 at 5670.479 kb on - strand, within PFLU_RS25400 at 5670.584 kb on + strand, within PFLU_RS25400 at 5670.584 kb on + strand, within PFLU_RS25400 at 5670.584 kb on + strand, within PFLU_RS25400 at 5670.584 kb on + strand, within PFLU_RS25400 at 5670.584 kb on + strand, within PFLU_RS25400 at 5670.584 kb on + strand, within PFLU_RS25400 at 5670.584 kb on + strand, within PFLU_RS25400 at 5670.585 kb on - strand, within PFLU_RS25400 at 5670.585 kb on - strand, within PFLU_RS25400 at 5670.585 kb on - strand, within PFLU_RS25400 at 5670.585 kb on - strand, within PFLU_RS25400 at 5670.672 kb on - strand, within PFLU_RS25400 at 5670.825 kb on + strand, within PFLU_RS25400 at 5670.826 kb on - strand, within PFLU_RS25400 at 5670.826 kb on - strand, within PFLU_RS25400 at 5670.946 kb on + strand, within PFLU_RS25400 at 5671.542 kb on + strand, within PFLU_RS25400 at 5671.542 kb on + strand, within PFLU_RS25400 at 5671.543 kb on - strand, within PFLU_RS25400 at 5671.564 kb on + strand, within PFLU_RS25400 at 5671.564 kb on + strand, within PFLU_RS25400 at 5671.688 kb on - strand at 5671.775 kb on + strand at 5671.881 kb on + strand at 5671.881 kb on + strand at 5672.005 kb on - strand, within PFLU_RS25405 at 5672.037 kb on + strand, within PFLU_RS25405 at 5672.038 kb on - strand, within PFLU_RS25405 at 5672.038 kb on - strand, within PFLU_RS25405 at 5672.038 kb on - strand, within PFLU_RS25405 at 5672.038 kb on - strand, within PFLU_RS25405 at 5672.138 kb on + strand, within PFLU_RS25405 at 5672.138 kb on + strand, within PFLU_RS25405 at 5672.139 kb on - strand, within PFLU_RS25405 at 5672.139 kb on - strand, within PFLU_RS25405 at 5672.139 kb on - strand, within PFLU_RS25405 at 5672.142 kb on + strand, within PFLU_RS25405 at 5672.142 kb on + strand, within PFLU_RS25405 at 5672.142 kb on + strand, within PFLU_RS25405 at 5672.142 kb on + strand, within PFLU_RS25405 at 5672.142 kb on + strand, within PFLU_RS25405 at 5672.143 kb on - strand, within PFLU_RS25405 at 5672.143 kb on - strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.206 kb on - strand, within PFLU_RS25405 at 5672.206 kb on - strand, within PFLU_RS25405 at 5672.206 kb on - strand, within PFLU_RS25405 at 5672.261 kb on + strand at 5672.262 kb on - strand at 5672.285 kb on + strand at 5672.286 kb on - strand at 5672.286 kb on - strand at 5672.286 kb on - strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.301 kb on - strand at 5672.301 kb on - strand at 5672.301 kb on - strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.385 kb on - strand at 5672.385 kb on - strand at 5672.385 kb on - strand at 5672.742 kb on - strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C); with MOPS remove 5,668,989 + +0.2 5,668,989 + +1.1 5,668,989 + -2.2 5,668,990 - -0.1 5,668,990 - +0.3 5,668,990 - +0.5 5,669,085 + PFLU_RS25395 0.16 +1.3 5,669,085 + PFLU_RS25395 0.16 -1.8 5,669,085 + PFLU_RS25395 0.16 -2.1 5,669,085 + PFLU_RS25395 0.16 +0.2 5,669,086 - PFLU_RS25395 0.16 -1.5 5,669,086 - PFLU_RS25395 0.16 -2.4 5,669,086 - PFLU_RS25395 0.16 +0.6 5,669,086 - PFLU_RS25395 0.16 +0.4 5,669,086 - PFLU_RS25395 0.16 +1.6 5,669,086 - PFLU_RS25395 0.16 -0.1 5,669,086 - PFLU_RS25395 0.16 +1.3 5,669,086 - PFLU_RS25395 0.16 -0.2 5,669,184 + PFLU_RS25395 0.32 -0.4 5,669,184 + PFLU_RS25395 0.32 -0.8 5,669,233 + PFLU_RS25395 0.40 -0.8 5,669,233 + PFLU_RS25395 0.40 +1.5 5,669,234 - PFLU_RS25395 0.40 -0.0 5,669,562 + -1.5 5,669,562 + +0.6 5,669,594 - -0.5 5,669,622 - +0.7 5,669,622 - -0.2 5,669,622 - +0.2 5,669,654 + +1.8 5,669,671 + +1.3 5,669,672 - +1.0 5,669,672 - -1.2 5,669,672 - -1.0 5,669,752 + -0.2 5,669,752 + +0.2 5,669,753 - +0.9 5,669,753 - -2.4 5,669,753 - -0.5 5,669,753 - -0.2 5,669,790 + +1.0 5,669,791 - +1.5 5,669,791 - -0.3 5,669,791 - +1.9 5,669,987 - +0.2 5,670,053 + PFLU_RS25400 0.10 -0.2 5,670,053 + PFLU_RS25400 0.10 +3.3 5,670,053 + PFLU_RS25400 0.10 +1.5 5,670,053 + PFLU_RS25400 0.10 -0.1 5,670,053 + PFLU_RS25400 0.10 -0.1 5,670,053 + PFLU_RS25400 0.10 +1.3 5,670,053 + PFLU_RS25400 0.10 -1.2 5,670,053 + PFLU_RS25400 0.10 -1.0 5,670,053 + PFLU_RS25400 0.10 +1.1 5,670,053 + PFLU_RS25400 0.10 -1.3 5,670,053 + PFLU_RS25400 0.10 -0.5 5,670,053 + PFLU_RS25400 0.10 +1.2 5,670,053 + PFLU_RS25400 0.10 -0.6 5,670,053 + PFLU_RS25400 0.10 -0.6 5,670,053 + PFLU_RS25400 0.10 -0.8 5,670,053 + PFLU_RS25400 0.10 +1.3 5,670,053 + PFLU_RS25400 0.10 +1.1 5,670,053 + PFLU_RS25400 0.10 -1.1 5,670,053 + PFLU_RS25400 0.10 +0.1 5,670,053 + PFLU_RS25400 0.10 -2.9 5,670,053 + PFLU_RS25400 0.10 -0.6 5,670,053 + PFLU_RS25400 0.10 +1.2 5,670,053 + PFLU_RS25400 0.10 +0.9 5,670,053 + PFLU_RS25400 0.10 +1.0 5,670,053 + PFLU_RS25400 0.10 +0.3 5,670,053 + PFLU_RS25400 0.10 +1.8 5,670,053 + PFLU_RS25400 0.10 -0.5 5,670,053 + PFLU_RS25400 0.10 -0.3 5,670,054 - PFLU_RS25400 0.10 +0.3 5,670,054 - PFLU_RS25400 0.10 +1.4 5,670,054 - PFLU_RS25400 0.10 +0.1 5,670,054 - PFLU_RS25400 0.10 +0.7 5,670,054 - PFLU_RS25400 0.10 +0.1 5,670,054 - PFLU_RS25400 0.10 -1.8 5,670,054 - PFLU_RS25400 0.10 +0.4 5,670,054 - PFLU_RS25400 0.10 -0.8 5,670,054 - PFLU_RS25400 0.10 -0.4 5,670,054 - PFLU_RS25400 0.10 -0.7 5,670,054 - PFLU_RS25400 0.10 +0.2 5,670,054 - PFLU_RS25400 0.10 -2.1 5,670,054 - PFLU_RS25400 0.10 -1.1 5,670,054 - PFLU_RS25400 0.10 +0.3 5,670,054 - PFLU_RS25400 0.10 -1.3 5,670,054 - PFLU_RS25400 0.10 -0.9 5,670,054 - PFLU_RS25400 0.10 +0.5 5,670,054 - PFLU_RS25400 0.10 +0.9 5,670,054 - PFLU_RS25400 0.10 +0.1 5,670,054 - PFLU_RS25400 0.10 +1.2 5,670,054 - PFLU_RS25400 0.10 -0.0 5,670,093 + PFLU_RS25400 0.12 -0.6 5,670,093 + PFLU_RS25400 0.12 -0.8 5,670,093 + PFLU_RS25400 0.12 +0.5 5,670,094 - PFLU_RS25400 0.12 +0.4 5,670,094 - PFLU_RS25400 0.12 +0.8 5,670,094 - PFLU_RS25400 0.12 -0.5 5,670,094 - PFLU_RS25400 0.12 -0.5 5,670,237 - PFLU_RS25400 0.20 -0.0 5,670,237 - PFLU_RS25400 0.20 -0.2 5,670,241 + PFLU_RS25400 0.20 +0.4 5,670,404 + PFLU_RS25400 0.28 +0.2 5,670,419 + PFLU_RS25400 0.29 -0.2 5,670,420 - PFLU_RS25400 0.29 -0.6 5,670,420 - PFLU_RS25400 0.29 +1.4 5,670,420 - PFLU_RS25400 0.29 +1.1 5,670,420 - PFLU_RS25400 0.29 +0.7 5,670,478 + PFLU_RS25400 0.32 -0.9 5,670,479 - PFLU_RS25400 0.32 -0.4 5,670,479 - PFLU_RS25400 0.32 -0.0 5,670,479 - PFLU_RS25400 0.32 +1.1 5,670,479 - PFLU_RS25400 0.32 +0.8 5,670,584 + PFLU_RS25400 0.38 +1.1 5,670,584 + PFLU_RS25400 0.38 -1.3 5,670,584 + PFLU_RS25400 0.38 -0.1 5,670,584 + PFLU_RS25400 0.38 -0.3 5,670,584 + PFLU_RS25400 0.38 +0.9 5,670,584 + PFLU_RS25400 0.38 -2.2 5,670,584 + PFLU_RS25400 0.38 -2.0 5,670,585 - PFLU_RS25400 0.38 +0.3 5,670,585 - PFLU_RS25400 0.38 -0.1 5,670,585 - PFLU_RS25400 0.38 +0.2 5,670,585 - PFLU_RS25400 0.38 +0.4 5,670,672 - PFLU_RS25400 0.42 +0.9 5,670,825 + PFLU_RS25400 0.50 -2.2 5,670,826 - PFLU_RS25400 0.50 -1.4 5,670,826 - PFLU_RS25400 0.50 -0.6 5,670,946 + PFLU_RS25400 0.57 +0.9 5,671,542 + PFLU_RS25400 0.88 -1.6 5,671,542 + PFLU_RS25400 0.88 +0.4 5,671,543 - PFLU_RS25400 0.88 -1.7 5,671,564 + PFLU_RS25400 0.89 -0.5 5,671,564 + PFLU_RS25400 0.89 +0.4 5,671,688 - +1.0 5,671,775 + +0.0 5,671,881 + +1.4 5,671,881 + +0.6 5,672,005 - PFLU_RS25405 0.28 +1.1 5,672,037 + PFLU_RS25405 0.37 -0.2 5,672,038 - PFLU_RS25405 0.37 -1.9 5,672,038 - PFLU_RS25405 0.37 -1.7 5,672,038 - PFLU_RS25405 0.37 -0.2 5,672,038 - PFLU_RS25405 0.37 +1.6 5,672,138 + PFLU_RS25405 0.64 +0.8 5,672,138 + PFLU_RS25405 0.64 +0.2 5,672,139 - PFLU_RS25405 0.64 +1.2 5,672,139 - PFLU_RS25405 0.64 -0.5 5,672,139 - PFLU_RS25405 0.64 -0.5 5,672,142 + PFLU_RS25405 0.65 +0.0 5,672,142 + PFLU_RS25405 0.65 +0.9 5,672,142 + PFLU_RS25405 0.65 -1.1 5,672,142 + PFLU_RS25405 0.65 -1.0 5,672,142 + PFLU_RS25405 0.65 +0.6 5,672,143 - PFLU_RS25405 0.66 +0.5 5,672,143 - PFLU_RS25405 0.66 -0.6 5,672,205 + PFLU_RS25405 0.82 +0.1 5,672,205 + PFLU_RS25405 0.82 -1.0 5,672,205 + PFLU_RS25405 0.82 -1.5 5,672,205 + PFLU_RS25405 0.82 +0.0 5,672,205 + PFLU_RS25405 0.82 +0.2 5,672,206 - PFLU_RS25405 0.83 +0.2 5,672,206 - PFLU_RS25405 0.83 +0.9 5,672,206 - PFLU_RS25405 0.83 +0.2 5,672,261 + +2.4 5,672,262 - -0.8 5,672,285 + +1.2 5,672,286 - -2.1 5,672,286 - +0.9 5,672,286 - -0.8 5,672,300 + +0.7 5,672,300 + +1.1 5,672,300 + +0.0 5,672,300 + -0.1 5,672,301 - -2.2 5,672,301 - +0.3 5,672,301 - +1.0 5,672,302 + +1.8 5,672,302 + -0.8 5,672,302 + +0.1 5,672,302 + -2.0 5,672,302 + +0.6 5,672,302 + +0.8 5,672,302 + -0.4 5,672,302 + +0.1 5,672,303 - -0.2 5,672,303 - +2.7 5,672,303 - +0.4 5,672,303 - -0.2 5,672,303 - +0.6 5,672,303 - +0.3 5,672,303 - +0.2 5,672,303 - -2.6 5,672,303 - -0.4 5,672,303 - +0.1 5,672,303 - +0.5 5,672,385 - -0.2 5,672,385 - +1.6 5,672,385 - +0.7 5,672,742 - PFLU_RS25410 0.30 +1.1 5,672,744 + PFLU_RS25410 0.30 -1.6 5,672,744 + PFLU_RS25410 0.30 +0.5 5,672,744 + PFLU_RS25410 0.30 +0.8 5,672,744 + PFLU_RS25410 0.30 +0.5 5,672,745 - PFLU_RS25410 0.30 +0.4 5,672,745 - PFLU_RS25410 0.30 -1.1 5,672,745 - PFLU_RS25410 0.30 -1.0
Or see this region's nucleotide sequence