Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25165

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,624,636	+		PFLU_RS25160	0.32	-0.7
5,624,636	+		PFLU_RS25160	0.32	-0.9
5,624,637	-		PFLU_RS25160	0.32	-0.7
5,624,637	-		PFLU_RS25160	0.32	-0.5
5,624,819	-		PFLU_RS25160	0.50	-0.2
5,624,834	+		PFLU_RS25160	0.51	+0.5
5,624,842	+		PFLU_RS25160	0.52	+0.5
5,624,842	+		PFLU_RS25160	0.52	-0.7
5,624,843	-		PFLU_RS25160	0.52	-0.6
5,624,959	+		PFLU_RS25160	0.63	+0.4
5,624,959	+		PFLU_RS25160	0.63	-0.5
5,624,959	+		PFLU_RS25160	0.63	+1.2
5,624,959	+		PFLU_RS25160	0.63	-2.8
5,624,960	-		PFLU_RS25160	0.63	+0.8
5,624,960	-		PFLU_RS25160	0.63	+0.4
5,624,960	-		PFLU_RS25160	0.63	+1.4
5,624,960	-		PFLU_RS25160	0.63	-2.1
5,624,960	-		PFLU_RS25160	0.63	+1.1
5,624,962	+		PFLU_RS25160	0.64	-0.1
5,624,962	+		PFLU_RS25160	0.64	+1.0
5,624,962	+		PFLU_RS25160	0.64	-0.7
5,624,962	+		PFLU_RS25160	0.64	+0.9
5,624,962	+		PFLU_RS25160	0.64	+0.0
5,624,962	+		PFLU_RS25160	0.64	+0.6
5,625,183	+		PFLU_RS25160	0.85	-1.8
5,625,359	+				+0.5
5,625,360	-				+0.5
5,625,360	-				+0.7
5,625,360	-				+0.3
5,625,391	+				-0.0
5,625,393	+				-3.3
5,625,393	+				+0.7
5,625,394	-				+0.7
5,625,394	-				-0.7
5,625,394	-				-1.1
5,625,410	-				-0.1
5,625,410	-				+0.8
5,625,420	+				-1.0
5,625,420	+				-0.4
5,625,420	+				-0.5
5,625,421	-				+0.2
5,625,422	+				-0.1
5,625,422	+				-0.6
5,625,422	+				+0.0
5,625,422	+				-0.1
5,625,422	+				-1.0
5,625,422	+				+0.8
5,625,422	+				+0.5
5,625,422	+				-1.6
5,625,422	+				-1.1
5,625,422	+				-1.5
5,625,422	+				-1.8
5,625,422	+				+0.4
5,625,422	+				+1.7
5,625,423	-				+0.4
5,625,423	-				-2.4
5,625,423	-				-0.6
5,625,423	-				+1.5
5,625,423	-				-0.4
5,625,423	-				+0.7
5,625,423	-				+0.5
5,625,423	-				-0.4
5,625,423	-				+1.4
5,625,423	-				+1.3
5,625,423	-				-0.5
5,625,423	-				+0.7
5,625,423	-				+0.7
5,625,423	-				-1.1
5,625,546	+				-0.1
5,625,546	+				+0.2
5,625,546	+				+1.2
5,625,546	+				+1.3
5,625,546	+				+0.1
5,625,546	+				-0.6
5,625,546	+				+0.1
5,625,546	+				-1.3
5,625,546	+				-0.2
5,625,546	+				-2.3
5,625,547	-				+1.1
5,625,547	-				-0.1
5,625,547	-				+0.6
5,625,547	-				+0.7
5,625,547	-				+0.3
5,625,547	-				+0.2
5,625,547	-				-0.4
5,625,547	-				+0.5
5,625,547	-				-0.1
5,625,665	+		PFLU_RS25165	0.21	+0.6
5,625,665	+		PFLU_RS25165	0.21	+1.2
5,625,665	+		PFLU_RS25165	0.21	+1.4
5,625,665	+		PFLU_RS25165	0.21	-0.4
5,625,666	-		PFLU_RS25165	0.21	-0.7
5,625,666	-		PFLU_RS25165	0.21	-0.3
5,625,666	-		PFLU_RS25165	0.21	+0.8
5,625,666	-		PFLU_RS25165	0.21	-0.1
5,625,666	-		PFLU_RS25165	0.21	-1.2
5,625,689	+		PFLU_RS25165	0.23	-1.1
5,625,690	-		PFLU_RS25165	0.24	-0.7
5,625,690	-		PFLU_RS25165	0.24	-1.7
5,625,690	-		PFLU_RS25165	0.24	+0.6
5,625,740	+		PFLU_RS25165	0.29	+1.0
5,625,740	+		PFLU_RS25165	0.29	+0.6
5,625,740	+		PFLU_RS25165	0.29	-0.3
5,625,740	+		PFLU_RS25165	0.29	-0.4
5,625,740	+		PFLU_RS25165	0.29	-0.1
5,625,740	+		PFLU_RS25165	0.29	+1.3
5,625,740	+		PFLU_RS25165	0.29	+1.3
5,625,740	+		PFLU_RS25165	0.29	-0.5
5,625,740	+		PFLU_RS25165	0.29	-0.9
5,625,740	+		PFLU_RS25165	0.29	+0.5
5,625,741	-		PFLU_RS25165	0.29	-0.3
5,625,741	-		PFLU_RS25165	0.29	-0.7
5,625,741	-		PFLU_RS25165	0.29	+0.4
5,625,742	+		PFLU_RS25165	0.29	-0.1
5,625,742	+		PFLU_RS25165	0.29	+0.6
5,625,743	-		PFLU_RS25165	0.30	+1.1
5,625,743	-		PFLU_RS25165	0.30	-2.1
5,625,743	-		PFLU_RS25165	0.30	+1.1
5,625,743	-		PFLU_RS25165	0.30	+0.9
5,625,752	+		PFLU_RS25165	0.31	-0.7
5,625,752	+		PFLU_RS25165	0.31	+1.4
5,625,752	+		PFLU_RS25165	0.31	+0.6
5,625,753	-		PFLU_RS25165	0.31	+0.6
5,626,119	-		PFLU_RS25165	0.72	+1.5
5,626,119	-		PFLU_RS25165	0.72	-2.2
5,626,145	+		PFLU_RS25165	0.74	+0.9
5,626,145	+		PFLU_RS25165	0.74	-0.4
5,626,145	+		PFLU_RS25165	0.74	-1.5
5,626,145	+		PFLU_RS25165	0.74	-2.5
5,626,145	+		PFLU_RS25165	0.74	+0.3
5,626,145	+		PFLU_RS25165	0.74	+0.3
5,626,145	+		PFLU_RS25165	0.74	-0.7
5,626,145	+		PFLU_RS25165	0.74	+1.7
5,626,145	+		PFLU_RS25165	0.74	-0.6
5,626,145	+		PFLU_RS25165	0.74	+0.3
5,626,145	+		PFLU_RS25165	0.74	-0.3
5,626,145	+		PFLU_RS25165	0.74	+1.2
5,626,145	+		PFLU_RS25165	0.74	+2.0
5,626,145	+		PFLU_RS25165	0.74	+1.0
5,626,145	+		PFLU_RS25165	0.74	+0.2
5,626,145	+		PFLU_RS25165	0.74	-0.3
5,626,146	-		PFLU_RS25165	0.75	-0.8
5,626,146	-		PFLU_RS25165	0.75	-1.0
5,626,146	-		PFLU_RS25165	0.75	-1.4
5,626,146	-		PFLU_RS25165	0.75	+0.7
5,626,146	-		PFLU_RS25165	0.75	+1.2
5,626,146	-		PFLU_RS25165	0.75	+0.4
5,626,146	-		PFLU_RS25165	0.75	-2.8
5,626,146	-		PFLU_RS25165	0.75	+0.9
5,626,146	-		PFLU_RS25165	0.75	-0.9
5,626,146	-		PFLU_RS25165	0.75	+0.4
5,626,146	-		PFLU_RS25165	0.75	+1.3
5,626,146	-		PFLU_RS25165	0.75	-1.7
5,626,146	-		PFLU_RS25165	0.75	+0.4
5,626,146	-		PFLU_RS25165	0.75	+1.3
5,626,199	+		PFLU_RS25165	0.81	+0.1
5,626,199	+		PFLU_RS25165	0.81	-0.4
5,626,200	-		PFLU_RS25165	0.81	+0.1
5,626,279	+		PFLU_RS25165	0.89	-0.3
5,626,280	-		PFLU_RS25165	0.90	+0.1
5,626,346	+				+0.4
5,626,346	+				-0.9
5,626,346	+				+0.1
5,626,346	+				-2.8
5,626,346	+				+0.6
5,626,346	+				+2.8
5,626,346	+				-0.7
5,626,347	-				-1.5
5,626,347	-				+1.5
5,626,347	-				+1.0
5,626,347	-				+0.0
5,626,347	-				+0.5
5,626,347	-				+2.0
5,626,347	-				-0.4
5,626,348	+				+1.9
5,626,348	+				-0.9
5,626,348	+				-1.6
5,626,348	+				-0.4
5,626,348	+				+0.6
5,626,348	+				+0.2
5,626,349	-				-1.0
5,626,349	-				-1.8
5,626,349	-				-0.8
5,626,349	-				+1.2
5,626,349	-				+0.8
5,626,349	-				+0.7
5,626,349	-				+0.5
5,626,370	+				-1.5
5,626,370	+				+0.9
5,626,370	+				+0.7
5,626,370	+				-0.2
5,626,371	-				+0.4
5,626,374	-				-0.5
5,626,374	-				+1.5
5,626,424	-				-0.2
5,626,424	-				+0.3
5,626,424	-				+0.2
5,626,424	-				-0.3
5,626,424	-				-2.0
5,626,427	+				+0.5
5,626,428	-				+2.4
5,626,428	-				-1.5
5,626,561	+				-0.6
5,626,561	+				+0.3
5,626,561	+				+1.0
5,626,562	-				-2.7
5,626,562	-				-0.2
5,626,562	-				+1.5
5,626,562	-				-1.2
5,626,562	-				-0.5
5,626,562	-				-2.2
5,626,691	-		PFLU_RS25170	0.18	-0.5
5,626,735	+		PFLU_RS25170	0.22	+0.7
5,626,735	+		PFLU_RS25170	0.22	-0.3
5,626,735	+		PFLU_RS25170	0.22	+0.9
5,626,735	+		PFLU_RS25170	0.22	+0.0
5,626,735	+		PFLU_RS25170	0.22	+0.7
5,626,736	-		PFLU_RS25170	0.22	-0.7
5,626,897	+		PFLU_RS25170	0.35	+1.2
5,626,916	+		PFLU_RS25170	0.36	+1.3
5,626,916	+		PFLU_RS25170	0.36	+1.0
5,626,916	+		PFLU_RS25170	0.36	+1.2
5,626,933	+		PFLU_RS25170	0.38	+1.5
5,626,933	+		PFLU_RS25170	0.38	-1.7
5,626,933	+		PFLU_RS25170	0.38	-0.5
5,626,934	-		PFLU_RS25170	0.38	-2.4
5,626,934	-		PFLU_RS25170	0.38	-0.4
5,626,934	-		PFLU_RS25170	0.38	-0.9
5,626,934	-		PFLU_RS25170	0.38	-1.0
5,626,934	-		PFLU_RS25170	0.38	-0.1
5,627,033	+		PFLU_RS25170	0.46	+0.8
5,627,033	+		PFLU_RS25170	0.46	+0.7
5,627,033	+		PFLU_RS25170	0.46	+2.1
5,627,034	-		PFLU_RS25170	0.46	-0.0
5,627,034	-		PFLU_RS25170	0.46	+0.7
5,627,034	-		PFLU_RS25170	0.46	+1.0
5,627,235	+		PFLU_RS25170	0.62	+0.2
5,627,327	-		PFLU_RS25170	0.69	-1.0
5,627,327	-		PFLU_RS25170	0.69	+0.5