Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23970

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,368,227	+		PFLU_RS23965	0.33	-0.4
5,368,228	-		PFLU_RS23965	0.33	-0.4
5,368,228	-		PFLU_RS23965	0.33	+0.3
5,368,293	+		PFLU_RS23965	0.38	+0.5
5,368,294	-		PFLU_RS23965	0.38	+1.2
5,368,470	+		PFLU_RS23965	0.50	-0.9
5,368,471	-		PFLU_RS23965	0.50	-0.5
5,368,471	-		PFLU_RS23965	0.50	+1.5
5,368,471	-		PFLU_RS23965	0.50	+0.4
5,368,471	-		PFLU_RS23965	0.50	+1.3
5,368,819	+		PFLU_RS23965	0.74	+0.5
5,368,819	+		PFLU_RS23965	0.74	+0.4
5,368,819	+		PFLU_RS23965	0.74	+1.8
5,368,819	+		PFLU_RS23965	0.74	+0.4
5,368,819	+		PFLU_RS23965	0.74	-1.6
5,368,819	+		PFLU_RS23965	0.74	+0.3
5,368,819	+		PFLU_RS23965	0.74	-0.7
5,368,820	-		PFLU_RS23965	0.74	+0.4
5,368,820	-		PFLU_RS23965	0.74	-1.2
5,368,820	-		PFLU_RS23965	0.74	-2.2
5,368,820	-		PFLU_RS23965	0.74	+1.2
5,368,820	-		PFLU_RS23965	0.74	+1.5
5,368,820	-		PFLU_RS23965	0.74	-1.2
5,368,820	-		PFLU_RS23965	0.74	+0.8
5,368,820	-		PFLU_RS23965	0.74	-0.7
5,368,834	+		PFLU_RS23965	0.75	-1.0
5,368,834	+		PFLU_RS23965	0.75	+0.0
5,368,834	+		PFLU_RS23965	0.75	-0.2
5,368,835	-		PFLU_RS23965	0.75	-0.5
5,368,864	+		PFLU_RS23965	0.78	+1.2
5,368,864	+		PFLU_RS23965	0.78	+0.6
5,368,864	+		PFLU_RS23965	0.78	-0.9
5,368,864	+		PFLU_RS23965	0.78	+0.1
5,368,865	-		PFLU_RS23965	0.78	-0.6
5,368,865	-		PFLU_RS23965	0.78	+0.5
5,368,865	-		PFLU_RS23965	0.78	+0.5
5,368,865	-		PFLU_RS23965	0.78	+1.2
5,368,865	-		PFLU_RS23965	0.78	+1.1
5,368,915	+		PFLU_RS23965	0.81	-0.2
5,368,916	-		PFLU_RS23965	0.81	-0.1
5,368,975	+		PFLU_RS23965	0.85	+0.4
5,368,976	-		PFLU_RS23965	0.85	-0.8
5,368,976	-		PFLU_RS23965	0.85	+1.9
5,368,993	+		PFLU_RS23965	0.87	-1.7
5,368,993	+		PFLU_RS23965	0.87	-0.2
5,368,993	+		PFLU_RS23965	0.87	+0.1
5,368,994	-		PFLU_RS23965	0.87	-1.0
5,369,011	+		PFLU_RS23965	0.88	+0.1
5,369,011	+		PFLU_RS23965	0.88	+0.4
5,369,012	-		PFLU_RS23965	0.88	-1.3
5,369,035	+		PFLU_RS23965	0.89	-2.2
5,369,161	+				+3.3
5,369,162	-				-0.1
5,369,182	+				+1.1
5,369,182	+				-0.4
5,369,182	+				-1.0
5,369,182	+				-2.0
5,369,182	+				-0.7
5,369,182	+				-1.3
5,369,182	+				+0.4
5,369,182	+				+0.3
5,369,182	+				-1.0
5,369,182	+				+0.3
5,369,182	+				-0.6
5,369,182	+				-1.5
5,369,182	+				-0.8
5,369,182	+				-1.5
5,369,183	-				-1.6
5,369,183	-				-0.7
5,369,183	-				+0.3
5,369,183	-				+1.0
5,369,183	-				+0.5
5,369,183	-				-0.9
5,369,183	-				-1.7
5,369,183	-				+1.0
5,369,183	-				-1.3
5,369,183	-				+0.8
5,369,183	-				-0.2
5,369,183	-				-1.4
5,369,207	+				+0.3
5,369,207	+				+0.5
5,369,207	+				+0.6
5,369,207	+				+2.0
5,369,208	-				+1.3
5,369,208	-				-0.5
5,369,231	-				+0.0
5,369,231	-				-0.1
5,369,231	-				-2.2
5,369,237	+				+2.6
5,369,238	-				+0.7
5,369,238	-				+0.7
5,369,303	+				+1.4
5,369,313	+				+0.1
5,369,313	+				+0.7
5,369,314	-				-2.2
5,369,722	+		PFLU_RS23970	0.41	-1.1
5,369,749	+		PFLU_RS23970	0.43	+0.9
5,369,749	+		PFLU_RS23970	0.43	+0.3
5,369,749	+		PFLU_RS23970	0.43	+0.4
5,369,749	+		PFLU_RS23970	0.43	+1.5
5,369,749	+		PFLU_RS23970	0.43	+0.0
5,369,750	-		PFLU_RS23970	0.43	+1.1
5,369,750	-		PFLU_RS23970	0.43	+0.7
5,369,750	-		PFLU_RS23970	0.43	+1.3
5,369,750	-		PFLU_RS23970	0.43	-0.4
5,369,750	-		PFLU_RS23970	0.43	+0.8
5,369,794	+		PFLU_RS23970	0.47	-2.6
5,369,795	-		PFLU_RS23970	0.47	+0.6
5,369,795	-		PFLU_RS23970	0.47	-0.9
5,369,795	-		PFLU_RS23970	0.47	-0.1
5,369,795	-		PFLU_RS23970	0.47	+1.5
5,369,795	-		PFLU_RS23970	0.47	+0.5
5,369,795	-		PFLU_RS23970	0.47	+1.6
5,369,840	-		PFLU_RS23970	0.50	-0.1
5,370,322	+		PFLU_RS23970	0.89	+2.1
5,370,323	-		PFLU_RS23970	0.89	+0.8
5,370,337	+		PFLU_RS23970	0.90	+0.3
5,370,338	-		PFLU_RS23970	0.90	+2.8
5,370,338	-		PFLU_RS23970	0.90	+0.1
5,370,338	-		PFLU_RS23970	0.90	+0.9
5,370,338	-		PFLU_RS23970	0.90	+0.8
5,370,338	-		PFLU_RS23970	0.90	+0.8
5,370,460	+				-1.0
5,370,463	+				+0.7
5,370,516	-				+0.7
5,370,601	+				-1.2
5,370,640	+		PFLU_RS23975	0.10	+1.3
5,370,640	+		PFLU_RS23975	0.10	-0.0
5,370,640	+		PFLU_RS23975	0.10	-0.9
5,370,641	-		PFLU_RS23975	0.10	+0.4
5,370,641	-		PFLU_RS23975	0.10	+0.3
5,370,641	-		PFLU_RS23975	0.10	+0.1
5,370,763	+		PFLU_RS23975	0.23	+0.2
5,370,763	+		PFLU_RS23975	0.23	-0.7
5,370,763	+		PFLU_RS23975	0.23	-0.5
5,370,764	-		PFLU_RS23975	0.23	-0.5
5,370,764	-		PFLU_RS23975	0.23	-0.7
5,370,764	-		PFLU_RS23975	0.23	+0.3
5,370,764	-		PFLU_RS23975	0.23	-0.6
5,370,764	-		PFLU_RS23975	0.23	-0.3
5,370,764	-		PFLU_RS23975	0.23	-0.2
5,370,764	-		PFLU_RS23975	0.23	-1.0
5,370,764	-		PFLU_RS23975	0.23	+0.1
5,370,764	-		PFLU_RS23975	0.23	-0.4
5,370,764	-		PFLU_RS23975	0.23	+0.6
5,370,764	-		PFLU_RS23975	0.23	-0.2
5,370,764	-		PFLU_RS23975	0.23	+0.7
5,370,764	-		PFLU_RS23975	0.23	+0.8
5,370,825	-		PFLU_RS23975	0.29	+0.8
5,370,853	+		PFLU_RS23975	0.31	+0.3
5,370,854	-		PFLU_RS23975	0.32	+1.1
5,371,009	+		PFLU_RS23975	0.47	+0.2
5,371,010	-		PFLU_RS23975	0.47	+0.0
5,371,010	-		PFLU_RS23975	0.47	+0.7
5,371,010	-		PFLU_RS23975	0.47	-2.7
5,371,010	-		PFLU_RS23975	0.47	+0.8
5,371,033	+		PFLU_RS23975	0.49	+1.0
5,371,033	+		PFLU_RS23975	0.49	-0.4
5,371,034	-		PFLU_RS23975	0.49	-0.4
5,371,034	-		PFLU_RS23975	0.49	-0.2
5,371,171	-		PFLU_RS23975	0.63	+0.5
5,371,230	+		PFLU_RS23975	0.69	+1.0
5,371,230	+		PFLU_RS23975	0.69	+0.6