Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23745

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,320,223	+		PFLU_RS23740	0.33	+0.3
5,320,245	+		PFLU_RS23740	0.34	-1.0
5,320,250	+		PFLU_RS23740	0.35	-1.1
5,320,297	+		PFLU_RS23740	0.38	+1.4
5,320,297	+		PFLU_RS23740	0.38	+0.8
5,320,297	+		PFLU_RS23740	0.38	-1.5
5,320,297	+		PFLU_RS23740	0.38	+1.5
5,320,297	+		PFLU_RS23740	0.38	+0.5
5,320,297	+		PFLU_RS23740	0.38	-0.1
5,320,297	+		PFLU_RS23740	0.38	-2.1
5,320,297	+		PFLU_RS23740	0.38	-1.2
5,320,325	+		PFLU_RS23740	0.40	+0.7
5,320,326	-		PFLU_RS23740	0.40	+0.2
5,320,326	-		PFLU_RS23740	0.40	+0.2
5,320,326	-		PFLU_RS23740	0.40	+0.8
5,320,326	-		PFLU_RS23740	0.40	-1.8
5,320,329	-		PFLU_RS23740	0.40	+0.3
5,320,357	-		PFLU_RS23740	0.43	+0.6
5,320,357	-		PFLU_RS23740	0.43	-0.4
5,320,359	+		PFLU_RS23740	0.43	-1.3
5,320,359	+		PFLU_RS23740	0.43	-0.1
5,320,359	+		PFLU_RS23740	0.43	-0.1
5,320,360	-		PFLU_RS23740	0.43	-2.0
5,320,399	-		PFLU_RS23740	0.46	+0.2
5,320,466	+		PFLU_RS23740	0.51	-0.6
5,320,466	+		PFLU_RS23740	0.51	-0.6
5,320,466	+		PFLU_RS23740	0.51	-0.2
5,320,466	+		PFLU_RS23740	0.51	+0.4
5,320,466	+		PFLU_RS23740	0.51	+0.9
5,320,467	-		PFLU_RS23740	0.51	-0.0
5,320,467	-		PFLU_RS23740	0.51	-0.1
5,320,467	-		PFLU_RS23740	0.51	+1.5
5,320,467	-		PFLU_RS23740	0.51	+0.4
5,320,467	-		PFLU_RS23740	0.51	+0.2
5,320,484	+		PFLU_RS23740	0.52	-0.4
5,320,484	+		PFLU_RS23740	0.52	+0.4
5,320,484	+		PFLU_RS23740	0.52	-0.3
5,320,485	-		PFLU_RS23740	0.52	+0.2
5,320,485	-		PFLU_RS23740	0.52	+0.7
5,320,505	+		PFLU_RS23740	0.54	+0.2
5,320,505	+		PFLU_RS23740	0.54	+1.2
5,320,505	+		PFLU_RS23740	0.54	+0.2
5,320,505	+		PFLU_RS23740	0.54	+0.0
5,320,506	-		PFLU_RS23740	0.54	+0.8
5,320,506	-		PFLU_RS23740	0.54	+1.0
5,320,506	-		PFLU_RS23740	0.54	-0.0
5,320,544	+		PFLU_RS23740	0.56	-0.6
5,320,544	+		PFLU_RS23740	0.56	+0.4
5,320,545	-		PFLU_RS23740	0.56	+0.7
5,320,545	-		PFLU_RS23740	0.56	-0.5
5,320,545	-		PFLU_RS23740	0.56	-0.1
5,320,559	+		PFLU_RS23740	0.58	+1.0
5,320,559	+		PFLU_RS23740	0.58	+0.7
5,320,559	+		PFLU_RS23740	0.58	-1.0
5,320,559	+		PFLU_RS23740	0.58	+0.2
5,320,559	+		PFLU_RS23740	0.58	+0.8
5,320,559	+		PFLU_RS23740	0.58	+0.9
5,320,559	+		PFLU_RS23740	0.58	+0.8
5,320,559	+		PFLU_RS23740	0.58	-1.1
5,320,559	+		PFLU_RS23740	0.58	+1.3
5,320,559	+		PFLU_RS23740	0.58	+0.4
5,320,560	-		PFLU_RS23740	0.58	-0.5
5,320,560	-		PFLU_RS23740	0.58	+0.7
5,320,560	-		PFLU_RS23740	0.58	+0.4
5,320,560	-		PFLU_RS23740	0.58	+1.8
5,320,560	-		PFLU_RS23740	0.58	-3.1
5,320,560	-		PFLU_RS23740	0.58	+0.4
5,320,560	-		PFLU_RS23740	0.58	-0.5
5,320,560	-		PFLU_RS23740	0.58	-2.1
5,320,560	-		PFLU_RS23740	0.58	+1.3
5,320,560	-		PFLU_RS23740	0.58	+0.6
5,320,560	-		PFLU_RS23740	0.58	+0.9
5,320,560	-		PFLU_RS23740	0.58	-1.3
5,320,560	-		PFLU_RS23740	0.58	+0.7
5,320,560	-		PFLU_RS23740	0.58	-0.1
5,320,560	-		PFLU_RS23740	0.58	-0.5
5,320,563	+		PFLU_RS23740	0.58	+0.2
5,320,563	+		PFLU_RS23740	0.58	+2.6
5,320,563	+		PFLU_RS23740	0.58	+0.0
5,320,563	+		PFLU_RS23740	0.58	-0.3
5,320,564	-		PFLU_RS23740	0.58	+0.9
5,320,725	-		PFLU_RS23740	0.70	-0.3
5,320,725	-		PFLU_RS23740	0.70	-0.1
5,320,806	+		PFLU_RS23740	0.76	+1.7
5,320,806	+		PFLU_RS23740	0.76	+0.8
5,320,864	+		PFLU_RS23740	0.80	-0.3
5,320,913	+		PFLU_RS23740	0.84	-0.2
5,320,913	+		PFLU_RS23740	0.84	+0.2
5,320,914	-		PFLU_RS23740	0.84	+0.7
5,320,946	-		PFLU_RS23740	0.86	+0.5
5,320,946	-		PFLU_RS23740	0.86	-0.6
5,320,949	+		PFLU_RS23740	0.86	-1.4
5,320,949	+		PFLU_RS23740	0.86	+0.4
5,320,949	+		PFLU_RS23740	0.86	+0.1
5,320,949	+		PFLU_RS23740	0.86	+0.6
5,320,949	+		PFLU_RS23740	0.86	-0.9
5,320,949	+		PFLU_RS23740	0.86	+1.4
5,320,949	+		PFLU_RS23740	0.86	-0.3
5,320,949	+		PFLU_RS23740	0.86	+0.7
5,320,950	-		PFLU_RS23740	0.87	-0.1
5,320,950	-		PFLU_RS23740	0.87	-0.3
5,320,950	-		PFLU_RS23740	0.87	+0.8
5,320,950	-		PFLU_RS23740	0.87	-0.1
5,320,950	-		PFLU_RS23740	0.87	+1.6
5,320,950	-		PFLU_RS23740	0.87	+0.9
5,320,950	-		PFLU_RS23740	0.87	+1.5
5,320,950	-		PFLU_RS23740	0.87	+0.5
5,320,950	-		PFLU_RS23740	0.87	+0.6
5,320,950	-		PFLU_RS23740	0.87	+0.7
5,320,950	-		PFLU_RS23740	0.87	-0.5
5,320,968	+		PFLU_RS23740	0.88	+0.0
5,320,969	-		PFLU_RS23740	0.88	-2.1
5,320,989	+		PFLU_RS23740	0.89	+0.6
5,321,134	+				-1.5
5,321,134	+				+1.1
5,321,135	-				+1.9
5,321,135	-				+0.7
5,321,135	-				-1.9
5,321,135	-				+0.6
5,321,135	-				+0.2
5,321,135	-				+1.6
5,321,149	-				-0.2
5,321,154	+				+3.3
5,321,155	-				+0.8
5,321,155	-				+0.5
5,321,157	+				-0.6
5,321,158	-				-0.7
5,321,158	-				+0.0
5,321,281	+				-2.3
5,321,281	+				-0.2
5,321,282	-				+1.4
5,321,314	+				+0.2
5,321,314	+				+1.8
5,321,314	+				+0.8
5,321,314	+				+0.6
5,321,314	+				-1.3
5,321,315	-				-0.6
5,321,315	-				-1.0
5,321,315	-				-2.5
5,321,315	-				-1.6
5,321,315	-				-1.1
5,321,632	+		PFLU_RS23745	0.36	+1.5
5,321,641	-		PFLU_RS23745	0.37	-2.9
5,321,804	+		PFLU_RS23745	0.51	-1.0
5,321,804	+		PFLU_RS23745	0.51	+0.7
5,321,805	-		PFLU_RS23745	0.51	+0.6
5,321,805	-		PFLU_RS23745	0.51	-0.3
5,321,805	-		PFLU_RS23745	0.51	-2.0
5,321,906	+		PFLU_RS23745	0.60	+0.0
5,321,906	+		PFLU_RS23745	0.60	-0.5
5,321,906	+		PFLU_RS23745	0.60	-1.2
5,321,907	-		PFLU_RS23745	0.60	-1.3
5,321,907	-		PFLU_RS23745	0.60	-2.3
5,321,907	-		PFLU_RS23745	0.60	-0.9
5,321,907	-		PFLU_RS23745	0.60	+0.1
5,322,119	+		PFLU_RS23745	0.78	-1.6
5,322,119	+		PFLU_RS23745	0.78	-2.1
5,322,119	+		PFLU_RS23745	0.78	+0.3
5,322,120	-		PFLU_RS23745	0.78	-1.7
5,322,120	-		PFLU_RS23745	0.78	+1.0
5,322,246	+		PFLU_RS23745	0.89	-1.2
5,322,246	+		PFLU_RS23745	0.89	-2.4
5,322,338	+				+0.3
5,322,338	+				+1.0
5,322,338	+				+0.4
5,322,339	-				-0.5
5,322,339	-				+0.9
5,322,339	-				-1.8
5,322,339	-				+0.0
5,322,339	-				-0.9
5,322,349	+				+0.5
5,322,349	+				-1.7
5,322,349	+				-2.3
5,322,350	-				-1.2
5,322,350	-				+0.2
5,322,350	-				+0.0
5,322,350	-				+1.8
5,322,350	-				+1.2
5,322,379	+				+0.8
5,322,380	-				-1.7
5,322,418	+				+0.2
5,322,418	+				+0.7
5,322,418	+				+0.6
5,322,418	+				-0.0
5,322,419	-				-0.0
5,322,419	-				-1.8
5,322,419	-				+0.8
5,322,419	-				-1.2
5,322,436	+				+2.2
5,322,436	+				+2.1
5,322,436	+				+1.2
5,322,436	+				+0.5
5,322,436	+				+1.4
5,322,436	+				+0.6
5,322,436	+				+1.4
5,322,437	-				-1.2
5,322,437	-				+0.1
5,322,437	-				-0.9
5,322,437	-				-0.5
5,322,437	-				-0.6
5,322,437	-				+0.4
5,322,437	-				-1.1
5,322,437	-				-3.3
5,322,488	+		PFLU_RS23750	0.13	-1.0
5,322,488	+		PFLU_RS23750	0.13	-2.1
5,322,488	+		PFLU_RS23750	0.13	+0.8
5,322,488	+		PFLU_RS23750	0.13	+0.7
5,322,488	+		PFLU_RS23750	0.13	-0.8
5,322,489	-		PFLU_RS23750	0.13	-2.1
5,322,489	-		PFLU_RS23750	0.13	-1.0
5,322,489	-		PFLU_RS23750	0.13	-0.3
5,322,489	-		PFLU_RS23750	0.13	-2.8
5,322,489	-		PFLU_RS23750	0.13	-0.3
5,322,489	-		PFLU_RS23750	0.13	-1.9
5,322,489	-		PFLU_RS23750	0.13	+1.4
5,322,489	-		PFLU_RS23750	0.13	-1.2
5,322,490	+		PFLU_RS23750	0.13	+1.1
5,322,490	+		PFLU_RS23750	0.13	+0.9
5,322,490	+		PFLU_RS23750	0.13	-2.9
5,322,490	+		PFLU_RS23750	0.13	+0.3
5,322,490	+		PFLU_RS23750	0.13	-0.0
5,322,490	+		PFLU_RS23750	0.13	-0.2
5,322,490	+		PFLU_RS23750	0.13	-1.7
5,322,490	+		PFLU_RS23750	0.13	+0.1
5,322,491	-		PFLU_RS23750	0.13	-0.6
5,322,491	-		PFLU_RS23750	0.13	-1.6
5,322,491	-		PFLU_RS23750	0.13	-0.1
5,322,491	-		PFLU_RS23750	0.13	-1.6
5,322,491	-		PFLU_RS23750	0.13	-0.2
5,322,491	-		PFLU_RS23750	0.13	-2.3
5,322,491	-		PFLU_RS23750	0.13	-1.3
5,322,730	+		PFLU_RS23750	0.42	-0.5
5,322,730	+		PFLU_RS23750	0.42	+0.2
5,322,730	+		PFLU_RS23750	0.42	-0.4
5,322,730	+		PFLU_RS23750	0.42	-0.2
5,322,730	+		PFLU_RS23750	0.42	-0.1
5,322,730	+		PFLU_RS23750	0.42	+1.4
5,322,730	+		PFLU_RS23750	0.42	+1.2
5,322,730	+		PFLU_RS23750	0.42	-0.8
5,322,730	+		PFLU_RS23750	0.42	-0.8
5,322,731	-		PFLU_RS23750	0.42	-0.1
5,322,731	-		PFLU_RS23750	0.42	+0.2
5,322,731	-		PFLU_RS23750	0.42	-0.1
5,322,731	-		PFLU_RS23750	0.42	-0.9
5,322,731	-		PFLU_RS23750	0.42	+0.1
5,322,731	-		PFLU_RS23750	0.42	-1.6
5,322,731	-		PFLU_RS23750	0.42	+1.2
5,322,733	+		PFLU_RS23750	0.42	+0.3
5,322,733	+		PFLU_RS23750	0.42	-0.6
5,322,733	+		PFLU_RS23750	0.42	-0.5
5,322,733	+		PFLU_RS23750	0.42	-1.4
5,322,733	+		PFLU_RS23750	0.42	-0.5
5,322,733	+		PFLU_RS23750	0.42	+1.7
5,322,733	+		PFLU_RS23750	0.42	+1.8
5,322,734	-		PFLU_RS23750	0.42	-0.3
5,322,734	-		PFLU_RS23750	0.42	-1.6
5,322,734	-		PFLU_RS23750	0.42	-0.7
5,322,734	-		PFLU_RS23750	0.42	-2.0
5,322,734	-		PFLU_RS23750	0.42	-3.4
5,322,734	-		PFLU_RS23750	0.42	+2.0
5,322,734	-		PFLU_RS23750	0.42	+1.4
5,322,850	-		PFLU_RS23750	0.56	-0.3
5,322,934	+		PFLU_RS23750	0.66	+0.8
5,322,934	+		PFLU_RS23750	0.66	+1.3
5,322,934	+		PFLU_RS23750	0.66	-2.4
5,322,934	+		PFLU_RS23750	0.66	+0.2
5,322,935	-		PFLU_RS23750	0.66	+0.9
5,323,006	+		PFLU_RS23750	0.74	+0.5
5,323,006	+		PFLU_RS23750	0.74	-1.0
5,323,007	-		PFLU_RS23750	0.74	-0.2
5,323,007	-		PFLU_RS23750	0.74	-1.2
5,323,007	-		PFLU_RS23750	0.74	-0.2
5,323,141	+				+0.4
5,323,141	+				-0.2
5,323,141	+				-1.0
5,323,141	+				-0.8
5,323,142	-				-3.1
5,323,142	-				-0.6
5,323,142	-				+1.8
5,323,171	+				+0.2
5,323,171	+				-1.8
5,323,171	+				+1.5
5,323,171	+				+0.5
5,323,171	+				+1.2
5,323,171	+				-0.3
5,323,171	+				-0.1
5,323,172	-				+1.1
5,323,172	-				+2.0
5,323,172	-				+0.4
5,323,172	-				+3.1
5,323,172	-				+0.1
5,323,172	-				+1.0
5,323,172	-				-0.0
5,323,172	-				-0.2
5,323,217	+				+0.2
5,323,217	+				+0.4
5,323,217	+				+0.2
5,323,218	-				-1.5
5,323,224	+				-0.0
5,323,225	-				+1.0
5,323,225	-				+0.9
5,323,225	-				+0.0
5,323,225	-				-0.9
5,323,225	-				+1.0
5,323,225	-				+0.2
5,323,225	-				-0.1
5,323,225	-				-0.7
5,323,247	+				+2.5
5,323,248	-				-2.3
5,323,253	+				+0.5
5,323,254	-				-2.1
5,323,343	+		PFLU_RS23755	0.14	+0.7
5,323,343	+		PFLU_RS23755	0.14	-1.3
5,323,343	+		PFLU_RS23755	0.14	+1.7
5,323,343	+		PFLU_RS23755	0.14	-1.5
5,323,343	+		PFLU_RS23755	0.14	-0.1
5,323,343	+		PFLU_RS23755	0.14	+0.9
5,323,344	-		PFLU_RS23755	0.14	-1.3
5,323,344	-		PFLU_RS23755	0.14	-1.3
5,323,344	-		PFLU_RS23755	0.14	-2.0
5,323,344	-		PFLU_RS23755	0.14	-0.6
5,323,344	-		PFLU_RS23755	0.14	-0.1
5,323,344	-		PFLU_RS23755	0.14	+0.5
5,323,373	+		PFLU_RS23755	0.17	-2.3