Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23625

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,297,420	-		PFLU_RS23620	0.45	+1.2
5,297,618	+		PFLU_RS23620	0.59	-0.8
5,297,744	+		PFLU_RS23620	0.68	+1.1
5,297,744	+		PFLU_RS23620	0.68	-0.6
5,297,745	-		PFLU_RS23620	0.68	+0.6
5,297,745	-		PFLU_RS23620	0.68	-0.0
5,297,758	+		PFLU_RS23620	0.69	-0.8
5,297,759	-		PFLU_RS23620	0.69	-0.2
5,297,787	+		PFLU_RS23620	0.71	-1.1
5,297,788	-		PFLU_RS23620	0.71	-0.7
5,297,788	-		PFLU_RS23620	0.71	+1.1
5,297,951	+		PFLU_RS23620	0.83	+0.4
5,297,952	-		PFLU_RS23620	0.83	-0.6
5,297,952	-		PFLU_RS23620	0.83	-0.4
5,297,960	+		PFLU_RS23620	0.83	-1.1
5,297,961	-		PFLU_RS23620	0.83	-1.9
5,298,014	+		PFLU_RS23620	0.87	+0.2
5,298,064	+				+0.8
5,298,094	-				-0.1
5,298,104	-				+2.1
5,298,216	-				+2.0
5,298,216	-				+0.9
5,298,216	-				+2.1
5,298,222	+				+0.3
5,298,249	+				-1.5
5,298,249	+				+1.8
5,298,249	+				+0.2
5,298,303	+				+1.8
5,298,303	+				-0.5
5,298,303	+				+0.4
5,298,303	+				+1.5
5,298,304	-				-0.9
5,298,304	-				-2.6
5,298,306	+				+1.1
5,298,306	+				-0.1
5,298,346	+				+0.1
5,298,346	+				-0.2
5,298,346	+				-0.8
5,298,346	+				+0.6
5,298,347	-				-0.1
5,298,352	+				+0.3
5,298,352	+				+0.5
5,298,353	-				-1.2
5,298,353	-				+0.3
5,298,353	-				-1.0
5,298,397	+		PFLU_RS23625	0.15	-0.2
5,298,397	+		PFLU_RS23625	0.15	-0.0
5,298,397	+		PFLU_RS23625	0.15	+0.1
5,298,398	-		PFLU_RS23625	0.15	+0.4
5,298,413	+		PFLU_RS23625	0.19	-0.3
5,298,435	+		PFLU_RS23625	0.23	+2.1
5,298,435	+		PFLU_RS23625	0.23	-0.2
5,298,435	+		PFLU_RS23625	0.23	+2.0
5,298,456	-		PFLU_RS23625	0.27	-0.2
5,298,481	+		PFLU_RS23625	0.33	+2.4
5,298,482	-		PFLU_RS23625	0.33	+1.2
5,298,482	-		PFLU_RS23625	0.33	+0.6
5,298,482	-		PFLU_RS23625	0.33	+0.6
5,298,482	-		PFLU_RS23625	0.33	+0.1
5,298,494	+		PFLU_RS23625	0.35	+0.2
5,298,494	+		PFLU_RS23625	0.35	-1.4
5,298,494	+		PFLU_RS23625	0.35	-1.9
5,298,494	+		PFLU_RS23625	0.35	+0.1
5,298,495	-		PFLU_RS23625	0.35	+0.2
5,298,495	-		PFLU_RS23625	0.35	-0.3
5,298,495	-		PFLU_RS23625	0.35	-0.5
5,298,495	-		PFLU_RS23625	0.35	+1.6
5,298,496	+		PFLU_RS23625	0.36	-1.6
5,298,542	+		PFLU_RS23625	0.45	-0.7
5,298,543	-		PFLU_RS23625	0.45	-0.0
5,298,574	+		PFLU_RS23625	0.52	-0.6
5,298,641	-		PFLU_RS23625	0.65	+1.3
5,298,641	-		PFLU_RS23625	0.65	+1.3
5,298,655	+		PFLU_RS23625	0.68	-1.3
5,298,656	-		PFLU_RS23625	0.69	-0.9
5,298,658	+		PFLU_RS23625	0.69	+0.3
5,298,659	-		PFLU_RS23625	0.69	+1.6
5,298,689	+		PFLU_RS23625	0.75	-0.6
5,298,710	+		PFLU_RS23625	0.80	+0.6
5,298,710	+		PFLU_RS23625	0.80	+0.5
5,298,768	+				-1.2
5,298,768	+				-1.0
5,298,768	+				+1.0
5,298,768	+				+0.4
5,298,769	-				-2.3
5,298,769	-				-0.4
5,298,769	-				-0.3
5,298,769	-				+0.8
5,298,769	-				+0.5
5,298,769	-				-1.0
5,298,769	-				+0.1
5,298,769	-				+1.0
5,298,769	-				+1.4
5,298,772	+				+0.2
5,298,772	+				+0.6
5,298,772	+				+0.3
5,298,773	-				+1.3
5,298,773	-				+0.0
5,298,874	+				-0.1
5,298,874	+				+0.6
5,298,874	+				+1.2
5,298,874	+				-2.3
5,298,874	+				+0.3
5,298,874	+				+0.4
5,298,874	+				-1.1
5,298,874	+				+0.6
5,298,874	+				-0.6
5,298,874	+				-0.6
5,298,874	+				+1.0
5,298,874	+				-0.1
5,298,874	+				-0.8
5,298,875	-				-0.0
5,298,875	-				-0.4
5,298,875	-				-0.3
5,298,875	-				+0.3
5,298,875	-				-1.7
5,298,875	-				-1.2
5,298,875	-				+1.5
5,298,878	+				-1.5
5,298,878	+				-1.5
5,298,878	+				-3.3
5,298,878	+				+1.2
5,298,878	+				+0.9
5,298,879	-				+0.0
5,298,879	-				+0.1
5,298,879	-				-0.1
5,298,879	-				-0.2
5,298,879	-				-3.1
5,298,888	-				+0.7
5,298,888	-				+0.7
5,298,916	-				+0.0
5,298,916	-				+1.3
5,299,054	+		PFLU_RS23630	0.18	+0.2
5,299,267	+		PFLU_RS23630	0.59	+0.4
5,299,267	+		PFLU_RS23630	0.59	-1.7
5,299,267	+		PFLU_RS23630	0.59	-1.7
5,299,267	+		PFLU_RS23630	0.59	-0.5
5,299,267	+		PFLU_RS23630	0.59	+0.7
5,299,267	+		PFLU_RS23630	0.59	-0.7
5,299,267	+		PFLU_RS23630	0.59	-1.5
5,299,267	+		PFLU_RS23630	0.59	-0.2
5,299,267	+		PFLU_RS23630	0.59	-0.8
5,299,267	+		PFLU_RS23630	0.59	-0.2
5,299,268	-		PFLU_RS23630	0.59	+0.5
5,299,268	-		PFLU_RS23630	0.59	-1.4
5,299,268	-		PFLU_RS23630	0.59	-1.1
5,299,268	-		PFLU_RS23630	0.59	+1.3
5,299,268	-		PFLU_RS23630	0.59	-0.3
5,299,268	-		PFLU_RS23630	0.59	+0.9
5,299,371	+		PFLU_RS23630	0.79	-0.5
5,299,371	+		PFLU_RS23630	0.79	+0.5
5,299,371	+		PFLU_RS23630	0.79	-0.8
5,299,371	+		PFLU_RS23630	0.79	-1.4
5,299,372	-		PFLU_RS23630	0.79	+0.4
5,299,372	-		PFLU_RS23630	0.79	+1.1
5,299,421	+		PFLU_RS23630	0.88	-0.7
5,299,422	-		PFLU_RS23630	0.88	+1.2
5,299,422	-		PFLU_RS23630	0.88	-0.3
5,299,422	-		PFLU_RS23630	0.88	-0.6
5,299,422	-		PFLU_RS23630	0.88	+1.6
5,299,422	-		PFLU_RS23630	0.88	-0.2
5,299,422	-		PFLU_RS23630	0.88	+0.6
5,299,481	-				+1.5
5,299,481	-				+1.6
5,299,481	-				+0.4
5,299,481	-				+0.4
5,299,489	+				-2.2
5,299,497	-				+0.2
5,299,497	-				-1.1
5,299,537	+		PFLU_RS31790	0.34	-1.3
5,299,624	+				-0.4
5,299,624	+				-3.1
5,299,749	+				+0.2
5,299,749	+				+1.1
5,299,749	+				-1.7
5,299,749	+				-0.5
5,299,750	-				+0.2
5,299,750	-				+0.8
5,299,750	-				+0.3
5,299,750	-				-2.0