Experiment: NAG (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20840 and PFLU_RS20845 are separated by 148 nucleotides PFLU_RS20845 and PFLU_RS20850 are separated by 176 nucleotides PFLU_RS20850 and PFLU_RS20855 are separated by 14 nucleotides PFLU_RS20855 and PFLU_RS20860 are separated by 112 nucleotides
PFLU_RS20840: PFLU_RS20840 - hypothetical protein, at 4,686,353 to 4,687,036
_RS20840
PFLU_RS20845: PFLU_RS20845 - hypothetical protein, at 4,687,185 to 4,687,427
_RS20845
PFLU_RS20850: PFLU_RS20850 - hypothetical protein, at 4,687,604 to 4,688,002
_RS20850
PFLU_RS20855: PFLU_RS20855 - LysE family translocator, at 4,688,017 to 4,688,625
_RS20855
PFLU_RS20860: PFLU_RS20860 - LysR family transcriptional regulator, at 4,688,738 to 4,689,601
_RS20860
Position (kb) 4687
4688
4689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4686.685 kb on - strand, within PFLU_RS20840 at 4686.846 kb on + strand, within PFLU_RS20840 at 4686.846 kb on + strand, within PFLU_RS20840 at 4686.846 kb on + strand, within PFLU_RS20840 at 4686.847 kb on - strand, within PFLU_RS20840 at 4686.847 kb on - strand, within PFLU_RS20840 at 4686.856 kb on + strand, within PFLU_RS20840 at 4686.856 kb on + strand, within PFLU_RS20840 at 4686.857 kb on - strand, within PFLU_RS20840 at 4686.875 kb on + strand, within PFLU_RS20840 at 4686.875 kb on + strand, within PFLU_RS20840 at 4686.875 kb on + strand, within PFLU_RS20840 at 4686.875 kb on + strand, within PFLU_RS20840 at 4686.875 kb on + strand, within PFLU_RS20840 at 4686.875 kb on + strand, within PFLU_RS20840 at 4686.876 kb on - strand, within PFLU_RS20840 at 4686.876 kb on - strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.930 kb on + strand, within PFLU_RS20840 at 4686.931 kb on - strand, within PFLU_RS20840 at 4686.931 kb on - strand, within PFLU_RS20840 at 4686.931 kb on - strand, within PFLU_RS20840 at 4686.931 kb on - strand, within PFLU_RS20840 at 4686.931 kb on - strand, within PFLU_RS20840 at 4686.936 kb on + strand, within PFLU_RS20840 at 4687.002 kb on + strand at 4687.003 kb on - strand at 4687.003 kb on - strand at 4687.003 kb on - strand at 4687.014 kb on + strand at 4687.113 kb on + strand at 4687.114 kb on - strand at 4687.144 kb on - strand at 4687.202 kb on - strand at 4687.314 kb on - strand, within PFLU_RS20845 at 4687.314 kb on - strand, within PFLU_RS20845 at 4687.314 kb on - strand, within PFLU_RS20845 at 4687.447 kb on + strand at 4687.448 kb on - strand at 4687.572 kb on - strand at 4687.817 kb on + strand, within PFLU_RS20850 at 4687.817 kb on + strand, within PFLU_RS20850 at 4687.818 kb on - strand, within PFLU_RS20850 at 4687.818 kb on - strand, within PFLU_RS20850 at 4687.835 kb on + strand, within PFLU_RS20850 at 4687.835 kb on + strand, within PFLU_RS20850 at 4687.836 kb on - strand, within PFLU_RS20850 at 4687.836 kb on - strand, within PFLU_RS20850 at 4687.836 kb on - strand, within PFLU_RS20850 at 4687.836 kb on - strand, within PFLU_RS20850 at 4687.899 kb on - strand, within PFLU_RS20850 at 4687.900 kb on + strand, within PFLU_RS20850 at 4687.900 kb on + strand, within PFLU_RS20850 at 4687.900 kb on + strand, within PFLU_RS20850 at 4687.900 kb on + strand, within PFLU_RS20850 at 4687.900 kb on + strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4687.901 kb on - strand, within PFLU_RS20850 at 4688.022 kb on + strand at 4688.022 kb on + strand at 4688.022 kb on + strand at 4688.022 kb on + strand at 4688.022 kb on + strand at 4688.022 kb on + strand at 4688.022 kb on + strand at 4688.022 kb on + strand at 4688.023 kb on - strand at 4688.023 kb on - strand at 4688.023 kb on - strand at 4688.166 kb on - strand, within PFLU_RS20855 at 4688.600 kb on + strand at 4688.638 kb on - strand at 4688.645 kb on - strand at 4688.658 kb on + strand at 4688.659 kb on - strand at 4688.678 kb on - strand at 4688.724 kb on + strand at 4688.730 kb on + strand at 4688.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C); with MOPS remove 4,686,685 - PFLU_RS20840 0.49 +0.7 4,686,846 + PFLU_RS20840 0.72 +0.6 4,686,846 + PFLU_RS20840 0.72 -0.4 4,686,846 + PFLU_RS20840 0.72 +1.0 4,686,847 - PFLU_RS20840 0.72 -1.3 4,686,847 - PFLU_RS20840 0.72 +0.4 4,686,856 + PFLU_RS20840 0.74 +0.5 4,686,856 + PFLU_RS20840 0.74 +0.2 4,686,857 - PFLU_RS20840 0.74 -0.4 4,686,875 + PFLU_RS20840 0.76 +0.4 4,686,875 + PFLU_RS20840 0.76 -1.9 4,686,875 + PFLU_RS20840 0.76 -1.1 4,686,875 + PFLU_RS20840 0.76 -0.0 4,686,875 + PFLU_RS20840 0.76 -2.3 4,686,875 + PFLU_RS20840 0.76 -0.4 4,686,876 - PFLU_RS20840 0.76 -2.0 4,686,876 - PFLU_RS20840 0.76 +1.4 4,686,930 + PFLU_RS20840 0.84 +2.1 4,686,930 + PFLU_RS20840 0.84 +0.6 4,686,930 + PFLU_RS20840 0.84 -2.9 4,686,930 + PFLU_RS20840 0.84 -2.7 4,686,930 + PFLU_RS20840 0.84 +0.0 4,686,930 + PFLU_RS20840 0.84 -0.4 4,686,930 + PFLU_RS20840 0.84 -0.7 4,686,930 + PFLU_RS20840 0.84 +1.3 4,686,931 - PFLU_RS20840 0.85 +0.3 4,686,931 - PFLU_RS20840 0.85 -0.4 4,686,931 - PFLU_RS20840 0.85 -1.0 4,686,931 - PFLU_RS20840 0.85 +1.2 4,686,931 - PFLU_RS20840 0.85 -0.1 4,686,936 + PFLU_RS20840 0.85 -1.8 4,687,002 + -2.5 4,687,003 - +2.1 4,687,003 - +0.2 4,687,003 - +0.4 4,687,014 + -0.9 4,687,113 + -0.0 4,687,114 - +0.3 4,687,144 - -0.3 4,687,202 - -1.0 4,687,314 - PFLU_RS20845 0.53 -0.2 4,687,314 - PFLU_RS20845 0.53 -2.3 4,687,314 - PFLU_RS20845 0.53 +2.4 4,687,447 + +0.7 4,687,448 - +0.4 4,687,572 - +0.5 4,687,817 + PFLU_RS20850 0.53 -1.4 4,687,817 + PFLU_RS20850 0.53 -1.2 4,687,818 - PFLU_RS20850 0.54 -1.4 4,687,818 - PFLU_RS20850 0.54 -0.6 4,687,835 + PFLU_RS20850 0.58 +0.2 4,687,835 + PFLU_RS20850 0.58 -0.7 4,687,836 - PFLU_RS20850 0.58 +0.7 4,687,836 - PFLU_RS20850 0.58 -0.9 4,687,836 - PFLU_RS20850 0.58 -0.6 4,687,836 - PFLU_RS20850 0.58 +0.7 4,687,899 - PFLU_RS20850 0.74 +0.5 4,687,900 + PFLU_RS20850 0.74 -0.6 4,687,900 + PFLU_RS20850 0.74 -1.4 4,687,900 + PFLU_RS20850 0.74 -1.0 4,687,900 + PFLU_RS20850 0.74 +0.2 4,687,900 + PFLU_RS20850 0.74 +1.0 4,687,901 - PFLU_RS20850 0.74 -1.0 4,687,901 - PFLU_RS20850 0.74 -0.8 4,687,901 - PFLU_RS20850 0.74 +0.7 4,687,901 - PFLU_RS20850 0.74 -0.4 4,687,901 - PFLU_RS20850 0.74 -0.8 4,687,901 - PFLU_RS20850 0.74 -0.6 4,687,901 - PFLU_RS20850 0.74 -1.2 4,687,901 - PFLU_RS20850 0.74 +1.1 4,688,022 + +1.5 4,688,022 + -0.2 4,688,022 + -0.8 4,688,022 + -3.0 4,688,022 + -1.4 4,688,022 + +0.6 4,688,022 + -0.8 4,688,022 + +0.7 4,688,023 - +0.5 4,688,023 - +0.1 4,688,023 - -0.7 4,688,166 - PFLU_RS20855 0.24 +1.4 4,688,600 + -0.1 4,688,638 - +1.6 4,688,645 - +0.6 4,688,658 + +0.1 4,688,659 - -1.2 4,688,678 - -1.1 4,688,724 + -1.4 4,688,730 + -0.3 4,688,731 - +1.9
Or see this region's nucleotide sequence