Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16540

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
3,750,910	+		PFLU_RS16535	0.64	+1.8
3,750,985	+		PFLU_RS16535	0.68	+0.3
3,750,986	-		PFLU_RS16535	0.69	-0.4
3,750,986	-		PFLU_RS16535	0.69	+2.2
3,750,989	+		PFLU_RS16535	0.69	+0.2
3,750,992	-		PFLU_RS16535	0.69	-0.5
3,751,010	+		PFLU_RS16535	0.70	+0.8
3,751,012	+		PFLU_RS16535	0.70	-0.3
3,751,040	-		PFLU_RS16535	0.72	-1.7
3,751,190	-		PFLU_RS16535	0.81	+2.3
3,751,250	-		PFLU_RS16535	0.85	+0.2
3,751,397	+				+1.5
3,751,486	+				+1.3
3,751,487	-				+1.8
3,751,487	-				+0.4
3,751,487	-				-1.2
3,751,491	-				+0.2
3,751,515	+				-1.4
3,751,609	+				-0.8
3,751,609	+				+0.9
3,751,609	+				+0.7
3,751,609	+				+0.3
3,751,609	+				-0.3
3,751,609	+				-1.0
3,751,609	+				+0.4
3,751,609	+				-0.5
3,751,609	+				-1.7
3,751,609	+				-0.6
3,751,609	+				-1.1
3,751,609	+				-0.6
3,751,609	+				+1.0
3,751,609	+				+0.4
3,751,610	-				-1.0
3,751,610	-				-1.4
3,751,610	-				+1.0
3,751,610	-				-1.8
3,751,610	-				+0.9
3,751,610	-				-0.5
3,751,610	-				-1.2
3,751,610	-				-0.8
3,751,610	-				-2.4
3,751,610	-				-0.1
3,751,610	-				-0.9
3,751,610	-				-0.6
3,751,611	+				-0.5
3,751,611	+				+0.0
3,751,611	+				-0.3
3,751,611	+				+0.2
3,751,611	+				-1.5
3,751,612	-				+0.8
3,751,612	-				+0.5
3,751,612	-				-1.0
3,751,627	+				+0.4
3,751,627	+				+0.7
3,751,627	+				+2.6
3,751,630	+				-0.9
3,751,630	+				-3.2
3,751,630	+				+0.8
3,751,631	-				-1.3
3,751,631	-				-1.2
3,751,631	-				+1.1
3,751,654	-				+0.3
3,751,654	-				+0.7
3,751,674	+				+1.1
3,751,674	+				+0.6
3,751,675	-				+1.0
3,751,675	-				+0.2
3,751,678	+				+0.9
3,751,678	+				-1.8
3,751,678	+				-0.4
3,751,679	-				+1.1
3,751,783	+				-0.6
3,751,784	-				+1.4
3,751,784	-				-1.3
3,751,841	-				-2.0
3,751,841	-				-0.2
3,751,841	-				-2.5
3,751,881	+				+0.8
3,751,881	+				+2.0
3,751,881	+				+1.4
3,751,882	-				+0.4
3,751,882	-				+0.2
3,751,882	-				+0.5
3,751,882	-				+1.0
3,751,929	+				-0.5
3,751,930	-				-0.4
3,751,940	+		PFLU_RS16540	0.10	+0.2
3,751,940	+		PFLU_RS16540	0.10	+0.2
3,751,940	+		PFLU_RS16540	0.10	+0.6
3,751,941	-		PFLU_RS16540	0.10	-1.0
3,751,941	-		PFLU_RS16540	0.10	+0.3
3,751,996	+		PFLU_RS16540	0.25	+1.0
3,751,996	+		PFLU_RS16540	0.25	+1.8
3,751,996	+		PFLU_RS16540	0.25	+1.4
3,752,010	+		PFLU_RS16540	0.29	+0.8
3,752,055	-		PFLU_RS16540	0.42	+0.8
3,752,089	+		PFLU_RS16540	0.51	+0.7
3,752,089	+		PFLU_RS16540	0.51	+1.2
3,752,090	-		PFLU_RS16540	0.51	+1.3
3,752,158	+		PFLU_RS16540	0.70	+2.3
3,752,158	+		PFLU_RS16540	0.70	+0.8
3,752,158	+		PFLU_RS16540	0.70	+0.4
3,752,158	+		PFLU_RS16540	0.70	+0.3
3,752,158	+		PFLU_RS16540	0.70	+1.7
3,752,158	+		PFLU_RS16540	0.70	-2.6
3,752,158	+		PFLU_RS16540	0.70	+0.1
3,752,158	+		PFLU_RS16540	0.70	-0.5
3,752,159	-		PFLU_RS16540	0.70	+0.2
3,752,159	-		PFLU_RS16540	0.70	-1.2
3,752,159	-		PFLU_RS16540	0.70	-1.1
3,752,159	-		PFLU_RS16540	0.70	+0.7
3,752,168	+		PFLU_RS16540	0.72	-0.2
3,752,169	-		PFLU_RS16540	0.73	-0.8
3,752,169	-		PFLU_RS16540	0.73	+2.5
3,752,169	-		PFLU_RS16540	0.73	+0.7
3,752,169	-		PFLU_RS16540	0.73	+0.3
3,752,169	-		PFLU_RS16540	0.73	-0.6
3,752,226	+		PFLU_RS16540	0.88	+1.3
3,752,227	-		PFLU_RS16540	0.89	-0.8
3,752,230	+		PFLU_RS16540	0.89	+0.6
3,752,231	-		PFLU_RS16540	0.90	-3.5
3,752,231	-		PFLU_RS16540	0.90	+1.7
3,752,231	-		PFLU_RS16540	0.90	-0.5
3,752,236	+				+0.2
3,752,236	+				+1.5
3,752,236	+				+1.4
3,752,237	-				+1.1
3,752,237	-				+0.8
3,752,249	+				+0.1
3,752,305	-				-0.9
3,752,334	+				-0.9
3,752,335	-				+0.2
3,752,365	+				-0.5
3,752,365	+				-2.0
3,752,365	+				+0.4
3,752,365	+				+0.5
3,752,365	+				-2.3
3,752,365	+				+0.6
3,752,365	+				-1.0
3,752,365	+				+1.3
3,752,365	+				+1.1
3,752,365	+				-0.8
3,752,365	+				-0.2
3,752,365	+				-0.8
3,752,365	+				+1.4
3,752,365	+				+1.4
3,752,365	+				+0.3
3,752,365	+				+0.5
3,752,365	+				+0.0
3,752,365	+				+1.3
3,752,365	+				-1.8
3,752,365	+				-1.4
3,752,365	+				+1.7
3,752,365	+				+3.0
3,752,365	+				+0.4
3,752,365	+				-0.9
3,752,365	+				-0.3
3,752,365	+				+0.6
3,752,365	+				-0.5
3,752,365	+				-2.2
3,752,365	+				+0.9
3,752,365	+				+0.3
3,752,365	+				+1.7
3,752,365	+				+0.6
3,752,365	+				+1.2
3,752,365	+				-0.6
3,752,366	-				-0.1
3,752,366	-				+0.1
3,752,366	-				-0.1
3,752,366	-				-2.0
3,752,366	-				-1.0
3,752,366	-				-0.2
3,752,366	-				-0.2
3,752,366	-				+0.9
3,752,366	-				-0.5
3,752,366	-				+1.0
3,752,366	-				-1.3
3,752,366	-				-0.1
3,752,366	-				-0.5
3,752,366	-				+0.3
3,752,366	-				+0.9
3,752,366	-				-2.3
3,752,366	-				+0.8
3,752,366	-				+0.5
3,752,366	-				-1.0
3,752,366	-				-0.2
3,752,366	-				-1.2
3,752,366	-				-1.6
3,752,366	-				-0.7
3,752,366	-				+0.0
3,752,366	-				-0.6
3,752,366	-				+0.6
3,752,366	-				+0.2
3,752,366	-				-3.2
3,752,366	-				-0.6
3,752,366	-				-1.6
3,752,366	-				-0.6
3,752,369	+				-1.8
3,752,369	+				+1.2
3,752,369	+				+0.9
3,752,369	+				+0.3
3,752,370	-				+0.9
3,752,370	-				+0.4
3,752,370	-				-0.4
3,752,370	-				+0.0
3,752,370	-				+1.5
3,752,427	+		PFLU_RS16545	0.13	+0.0
3,752,427	+		PFLU_RS16545	0.13	+0.5
3,752,427	+		PFLU_RS16545	0.13	+0.4
3,752,428	-		PFLU_RS16545	0.13	+0.3
3,752,428	-		PFLU_RS16545	0.13	+0.5
3,752,428	-		PFLU_RS16545	0.13	-0.5
3,752,428	-		PFLU_RS16545	0.13	+0.5
3,752,428	-		PFLU_RS16545	0.13	+0.6
3,752,428	-		PFLU_RS16545	0.13	+2.7
3,752,429	+		PFLU_RS16545	0.13	-1.1
3,752,429	+		PFLU_RS16545	0.13	+1.7
3,752,429	+		PFLU_RS16545	0.13	-0.6
3,752,430	-		PFLU_RS16545	0.13	+1.1
3,752,430	-		PFLU_RS16545	0.13	+0.0
3,752,430	-		PFLU_RS16545	0.13	-0.6
3,752,458	+		PFLU_RS16545	0.19	+2.6
3,752,458	+		PFLU_RS16545	0.19	+0.8
3,752,458	+		PFLU_RS16545	0.19	-0.3
3,752,458	+		PFLU_RS16545	0.19	-0.3
3,752,458	+		PFLU_RS16545	0.19	+1.3
3,752,458	+		PFLU_RS16545	0.19	-0.3
3,752,458	+		PFLU_RS16545	0.19	+0.7
3,752,459	-		PFLU_RS16545	0.19	+0.8
3,752,459	-		PFLU_RS16545	0.19	-1.5
3,752,459	-		PFLU_RS16545	0.19	+1.6
3,752,459	-		PFLU_RS16545	0.19	+0.4
3,752,500	+		PFLU_RS16545	0.28	+0.6
3,752,500	+		PFLU_RS16545	0.28	-0.1
3,752,501	-		PFLU_RS16545	0.28	+0.2
3,752,501	-		PFLU_RS16545	0.28	-1.3
3,752,517	+		PFLU_RS16545	0.31	+1.9
3,752,517	+		PFLU_RS16545	0.31	+1.0
3,752,517	+		PFLU_RS16545	0.31	+0.6
3,752,518	-		PFLU_RS16545	0.32	-0.8
3,752,518	-		PFLU_RS16545	0.32	-0.1
3,752,518	-		PFLU_RS16545	0.32	+0.9
3,752,533	+		PFLU_RS16545	0.35	+0.6
3,752,534	-		PFLU_RS16545	0.35	-2.6
3,752,564	+		PFLU_RS16545	0.41	+0.3
3,752,564	+		PFLU_RS16545	0.41	+0.3
3,752,564	+		PFLU_RS16545	0.41	+0.1
3,752,565	-		PFLU_RS16545	0.41	-0.3
3,752,565	-		PFLU_RS16545	0.41	-0.7
3,752,565	-		PFLU_RS16545	0.41	-1.6
3,752,565	-		PFLU_RS16545	0.41	-0.3
3,752,566	+		PFLU_RS16545	0.42	-1.6
3,752,566	+		PFLU_RS16545	0.42	+0.3
3,752,567	-		PFLU_RS16545	0.42	-0.7
3,752,567	-		PFLU_RS16545	0.42	-1.2
3,752,624	+		PFLU_RS16545	0.54	+0.6
3,752,634	+		PFLU_RS16545	0.56	+0.0
3,752,634	+		PFLU_RS16545	0.56	-0.5
3,752,634	+		PFLU_RS16545	0.56	+1.1
3,752,634	+		PFLU_RS16545	0.56	+1.0
3,752,635	-		PFLU_RS16545	0.56	+0.1
3,752,635	-		PFLU_RS16545	0.56	+1.0
3,752,700	+		PFLU_RS16545	0.70	-0.1
3,752,700	+		PFLU_RS16545	0.70	-1.5
3,752,700	+		PFLU_RS16545	0.70	+0.9
3,752,700	+		PFLU_RS16545	0.70	-0.6
3,752,700	+		PFLU_RS16545	0.70	-0.2
3,752,700	+		PFLU_RS16545	0.70	+0.3
3,752,701	-		PFLU_RS16545	0.70	+2.3
3,752,701	-		PFLU_RS16545	0.70	-0.1
3,752,701	-		PFLU_RS16545	0.70	+0.4
3,752,701	-		PFLU_RS16545	0.70	+0.9
3,752,701	-		PFLU_RS16545	0.70	+0.0
3,752,701	-		PFLU_RS16545	0.70	-0.4
3,752,701	-		PFLU_RS16545	0.70	-0.4
3,752,701	-		PFLU_RS16545	0.70	+0.1
3,752,705	-		PFLU_RS16545	0.71	+2.0
3,752,705	-		PFLU_RS16545	0.71	+0.8
3,752,761	+		PFLU_RS16545	0.82	-1.8
3,752,768	+		PFLU_RS16545	0.84	-0.4
3,752,777	+		PFLU_RS16545	0.86	-1.0
3,752,778	-		PFLU_RS16545	0.86	-0.7
3,752,778	-		PFLU_RS16545	0.86	-0.2
3,752,778	-		PFLU_RS16545	0.86	-1.5
3,752,816	+				+1.1
3,752,864	+				-0.6
3,752,865	-				-0.6
3,752,865	-				-0.4
3,752,865	-				-0.8
3,752,865	-				-0.2
3,752,865	-				-1.2
3,753,011	-		PFLU_RS16550	0.10	-0.1
3,753,025	+		PFLU_RS16550	0.11	+1.8
3,753,025	+		PFLU_RS16550	0.11	+0.6
3,753,026	-		PFLU_RS16550	0.11	+0.4
3,753,026	-		PFLU_RS16550	0.11	-0.6
3,753,028	+		PFLU_RS16550	0.11	+1.4
3,753,029	-		PFLU_RS16550	0.11	+0.3
3,753,029	-		PFLU_RS16550	0.11	+0.2
3,753,029	-		PFLU_RS16550	0.11	+0.4
3,753,029	-		PFLU_RS16550	0.11	+0.5
3,753,034	+		PFLU_RS16550	0.12	+1.4
3,753,034	+		PFLU_RS16550	0.12	-1.1
3,753,034	+		PFLU_RS16550	0.12	+0.5
3,753,034	+		PFLU_RS16550	0.12	+0.3
3,753,035	-		PFLU_RS16550	0.12	+1.7
3,753,035	-		PFLU_RS16550	0.12	-1.3
3,753,035	-		PFLU_RS16550	0.12	-0.0
3,753,035	-		PFLU_RS16550	0.12	-0.3
3,753,035	-		PFLU_RS16550	0.12	+1.6
3,753,080	+		PFLU_RS16550	0.15	+0.0
3,753,080	+		PFLU_RS16550	0.15	+0.2
3,753,080	+		PFLU_RS16550	0.15	+1.5
3,753,080	+		PFLU_RS16550	0.15	+1.5
3,753,080	+		PFLU_RS16550	0.15	-1.0
3,753,080	+		PFLU_RS16550	0.15	-1.3
3,753,080	+		PFLU_RS16550	0.15	-3.5
3,753,080	+		PFLU_RS16550	0.15	-0.4
3,753,081	-		PFLU_RS16550	0.15	+1.5
3,753,081	-		PFLU_RS16550	0.15	+0.6
3,753,081	-		PFLU_RS16550	0.15	+0.5
3,753,081	-		PFLU_RS16550	0.15	+1.4
3,753,081	-		PFLU_RS16550	0.15	+1.0
3,753,081	-		PFLU_RS16550	0.15	-2.6
3,753,081	-		PFLU_RS16550	0.15	-0.8
3,753,081	-		PFLU_RS16550	0.15	+0.5
3,753,081	-		PFLU_RS16550	0.15	-0.4
3,753,081	-		PFLU_RS16550	0.15	-0.2
3,753,130	+		PFLU_RS16550	0.18	-0.6
3,753,130	+		PFLU_RS16550	0.18	+0.2
3,753,130	+		PFLU_RS16550	0.18	-0.5
3,753,130	+		PFLU_RS16550	0.18	+0.2
3,753,130	+		PFLU_RS16550	0.18	+1.3
3,753,130	+		PFLU_RS16550	0.18	+0.6
3,753,130	+		PFLU_RS16550	0.18	+0.8
3,753,130	+		PFLU_RS16550	0.18	+0.6
3,753,130	+		PFLU_RS16550	0.18	+0.5
3,753,130	+		PFLU_RS16550	0.18	-0.3
3,753,131	-		PFLU_RS16550	0.18	-0.4
3,753,131	-		PFLU_RS16550	0.18	-1.4
3,753,131	-		PFLU_RS16550	0.18	-1.8
3,753,131	-		PFLU_RS16550	0.18	+0.0
3,753,131	-		PFLU_RS16550	0.18	-0.5
3,753,131	-		PFLU_RS16550	0.18	-1.5
3,753,131	-		PFLU_RS16550	0.18	-1.8
3,753,141	+		PFLU_RS16550	0.18	+0.1
3,753,141	+		PFLU_RS16550	0.18	-1.0
3,753,141	+		PFLU_RS16550	0.18	+0.3
3,753,141	+		PFLU_RS16550	0.18	+0.4
3,753,141	+		PFLU_RS16550	0.18	-0.9
3,753,142	-		PFLU_RS16550	0.18	+0.3
3,753,142	-		PFLU_RS16550	0.18	-1.7
3,753,142	-		PFLU_RS16550	0.18	+0.6
3,753,142	-		PFLU_RS16550	0.18	+0.5
3,753,142	-		PFLU_RS16550	0.18	-0.4
3,753,142	-		PFLU_RS16550	0.18	+0.5
3,753,142	-		PFLU_RS16550	0.18	+0.5
3,753,235	+		PFLU_RS16550	0.24	+0.6
3,753,235	+		PFLU_RS16550	0.24	+0.0
3,753,236	-		PFLU_RS16550	0.24	+0.8
3,753,256	+		PFLU_RS16550	0.25	-0.7
3,753,256	+		PFLU_RS16550	0.25	+0.8
3,753,256	+		PFLU_RS16550	0.25	+1.7
3,753,257	-		PFLU_RS16550	0.25	-1.7