Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15410

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
3,455,886	+		PFLU_RS15405	0.85	-0.5
3,455,886	+		PFLU_RS15405	0.85	+1.2
3,455,887	-		PFLU_RS15405	0.85	-0.7
3,455,887	-		PFLU_RS15405	0.85	-0.0
3,455,887	-		PFLU_RS15405	0.85	-0.6
3,455,887	-		PFLU_RS15405	0.85	+0.1
3,455,887	-		PFLU_RS15405	0.85	+1.4
3,455,887	-		PFLU_RS15405	0.85	-0.2
3,455,887	-		PFLU_RS15405	0.85	-1.9
3,455,900	+		PFLU_RS15405	0.86	-1.5
3,455,900	+		PFLU_RS15405	0.86	-1.2
3,455,900	+		PFLU_RS15405	0.86	+0.4
3,455,900	+		PFLU_RS15405	0.86	+2.1
3,455,900	+		PFLU_RS15405	0.86	+0.8
3,455,900	+		PFLU_RS15405	0.86	+0.7
3,455,900	+		PFLU_RS15405	0.86	+0.6
3,455,900	+		PFLU_RS15405	0.86	+0.0
3,455,900	+		PFLU_RS15405	0.86	+0.7
3,455,900	+		PFLU_RS15405	0.86	+0.1
3,455,900	+		PFLU_RS15405	0.86	+0.4
3,455,900	+		PFLU_RS15405	0.86	-0.6
3,455,900	+		PFLU_RS15405	0.86	+0.7
3,455,900	+		PFLU_RS15405	0.86	-0.0
3,455,901	-		PFLU_RS15405	0.86	+1.1
3,455,901	-		PFLU_RS15405	0.86	-0.2
3,455,901	-		PFLU_RS15405	0.86	+0.3
3,455,901	-		PFLU_RS15405	0.86	+0.3
3,455,901	-		PFLU_RS15405	0.86	-1.0
3,455,901	-		PFLU_RS15405	0.86	-0.0
3,455,901	-		PFLU_RS15405	0.86	-0.8
3,455,901	-		PFLU_RS15405	0.86	+0.2
3,455,901	-		PFLU_RS15405	0.86	-0.0
3,455,901	-		PFLU_RS15405	0.86	+0.7
3,455,901	-		PFLU_RS15405	0.86	+0.7
3,455,902	+		PFLU_RS15405	0.86	-1.2
3,455,902	+		PFLU_RS15405	0.86	-0.7
3,455,902	+		PFLU_RS15405	0.86	-2.0
3,455,902	+		PFLU_RS15405	0.86	+0.6
3,455,902	+		PFLU_RS15405	0.86	+0.1
3,455,902	+		PFLU_RS15405	0.86	+0.3
3,455,903	-		PFLU_RS15405	0.86	+0.2
3,455,944	+		PFLU_RS15405	0.89	-1.7
3,455,944	+		PFLU_RS15405	0.89	-1.3
3,455,944	+		PFLU_RS15405	0.89	+0.7
3,455,944	+		PFLU_RS15405	0.89	+0.9
3,455,944	+		PFLU_RS15405	0.89	+0.3
3,455,945	-		PFLU_RS15405	0.89	-1.0
3,455,984	+				+0.0
3,455,984	+				+0.3
3,455,985	-				+0.6
3,455,985	-				+1.4
3,456,018	+				-1.2
3,456,067	+				-2.3
3,456,107	-				-0.5
3,456,159	+				+0.0
3,456,160	-				-1.0
3,456,193	+				+1.8
3,456,194	-				+0.0
3,456,205	+				-1.5
3,456,212	+				-1.3
3,456,212	+				+1.3
3,456,213	-				-0.6
3,456,213	-				+0.9
3,456,239	+				-1.4
3,456,288	-				-0.0
3,456,340	+				-1.9
3,456,361	+				-2.0
3,456,362	-				+0.4
3,456,467	-				-0.1
3,456,498	+				+1.2
3,456,498	+				+0.4
3,456,619	+				+0.7
3,456,619	+				-0.0
3,456,619	+				-1.7
3,456,619	+				+0.1
3,456,619	+				-0.9
3,456,620	-				-0.7
3,456,620	-				-1.0
3,456,623	+				-1.5
3,456,623	+				-0.3
3,456,624	-				+0.3
3,456,720	-				+1.9
3,456,784	-				+0.1
3,456,796	+				-2.5
3,456,797	-				+0.7
3,456,803	+				-0.2
3,456,803	+				+0.1
3,456,803	+				-1.2
3,456,803	+				-2.5
3,456,804	-				+0.0
3,456,804	-				+0.7
3,456,804	-				-2.6
3,456,804	-				+0.1
3,456,858	-				+0.8
3,456,858	-				+0.8
3,457,098	-		PFLU_RS15410	0.29	-0.2
3,457,181	-		PFLU_RS15410	0.37	-1.7
3,457,271	+		PFLU_RS15410	0.46	-0.7
3,457,272	-		PFLU_RS15410	0.46	+0.8
3,457,272	-		PFLU_RS15410	0.46	-0.2
3,457,415	+		PFLU_RS15410	0.60	-0.7
3,457,416	-		PFLU_RS15410	0.60	-1.7
3,457,416	-		PFLU_RS15410	0.60	-0.2
3,457,416	-		PFLU_RS15410	0.60	-0.2
3,457,416	-		PFLU_RS15410	0.60	-2.0
3,457,424	+		PFLU_RS15410	0.61	+0.8
3,457,445	+		PFLU_RS15410	0.63	+0.8
3,457,446	-		PFLU_RS15410	0.63	-0.2
3,457,526	+		PFLU_RS15410	0.71	-0.2
3,457,697	+		PFLU_RS15410	0.87	-0.7
3,457,698	-		PFLU_RS15410	0.88	-1.2
3,457,705	-		PFLU_RS15410	0.88	-2.0
3,457,705	-		PFLU_RS15410	0.88	-1.5
3,457,705	-		PFLU_RS15410	0.88	-1.2
3,457,842	+				-1.2
3,457,842	+				-0.2
3,457,843	-				+1.3
3,457,864	+				-1.5
3,457,864	+				-1.5
3,457,865	-				+0.4
3,457,865	-				+1.0
3,457,865	-				-0.2
3,457,901	-				+0.8
3,457,901	-				-0.2
3,457,903	+				+1.4
3,457,903	+				+0.5
3,457,941	+				-2.3
3,457,941	+				+1.1
3,457,941	+				+0.4
3,457,941	+				+0.3
3,457,941	+				+0.3
3,457,941	+				+0.4
3,457,942	-				+0.2
3,457,942	-				-0.5
3,457,942	-				-0.6
3,457,942	-				-0.1
3,457,942	-				-0.6
3,457,957	+				-1.2
3,457,957	+				+0.3
3,457,985	+				-1.2
3,457,985	+				-1.2
3,457,986	-				-0.7
3,458,001	+				+1.5
3,458,026	+				+0.6
3,458,026	+				+1.7
3,458,027	-				-0.4
3,458,027	-				-3.4
3,458,027	-				+0.1
3,458,027	-				-2.0
3,458,027	-				+0.1
3,458,029	-				+0.1
3,458,104	+				+0.7
3,458,373	+		PFLU_RS15415	0.33	-0.5
3,458,469	+		PFLU_RS15415	0.43	-2.2
3,458,483	+		PFLU_RS15415	0.45	-0.2
3,458,483	+		PFLU_RS15415	0.45	-0.4
3,458,483	+		PFLU_RS15415	0.45	-0.4
3,458,483	+		PFLU_RS15415	0.45	-0.3
3,458,483	+		PFLU_RS15415	0.45	-0.2
3,458,483	+		PFLU_RS15415	0.45	+0.4
3,458,483	+		PFLU_RS15415	0.45	+0.3
3,458,483	+		PFLU_RS15415	0.45	+0.8
3,458,483	+		PFLU_RS15415	0.45	+0.9
3,458,484	-		PFLU_RS15415	0.45	-0.6
3,458,484	-		PFLU_RS15415	0.45	+0.6
3,458,484	-		PFLU_RS15415	0.45	+0.1
3,458,484	-		PFLU_RS15415	0.45	+0.5
3,458,484	-		PFLU_RS15415	0.45	-2.2
3,458,484	-		PFLU_RS15415	0.45	-1.4
3,458,484	-		PFLU_RS15415	0.45	-1.2
3,458,484	-		PFLU_RS15415	0.45	-3.0
3,458,484	-		PFLU_RS15415	0.45	-2.0
3,458,484	-		PFLU_RS15415	0.45	-1.7
3,458,484	-		PFLU_RS15415	0.45	+0.0
3,458,537	+		PFLU_RS15415	0.51	-0.0
3,458,538	-		PFLU_RS15415	0.51	+0.8
3,458,538	-		PFLU_RS15415	0.51	-0.2
3,458,538	-		PFLU_RS15415	0.51	+1.6
3,458,726	-		PFLU_RS15415	0.71	-0.7