Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14685

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
3,278,949	-				+0.6
3,279,110	+		PFLU_RS14675	0.24	+1.2
3,279,110	+		PFLU_RS14675	0.24	+0.2
3,279,111	-		PFLU_RS14675	0.24	+0.4
3,279,111	-		PFLU_RS14675	0.24	+0.6
3,279,111	-		PFLU_RS14675	0.24	+0.8
3,279,158	+		PFLU_RS14675	0.30	+0.2
3,279,158	+		PFLU_RS14675	0.30	+1.1
3,279,158	+		PFLU_RS14675	0.30	+0.6
3,279,158	+		PFLU_RS14675	0.30	-1.2
3,279,158	+		PFLU_RS14675	0.30	-1.3
3,279,158	+		PFLU_RS14675	0.30	+1.2
3,279,159	-		PFLU_RS14675	0.31	+0.2
3,279,159	-		PFLU_RS14675	0.31	+0.5
3,279,159	-		PFLU_RS14675	0.31	-0.4
3,279,159	-		PFLU_RS14675	0.31	-1.5
3,279,235	+		PFLU_RS14675	0.42	+0.8
3,279,236	-		PFLU_RS14675	0.42	-1.5
3,279,393	+		PFLU_RS14675	0.64	-1.7
3,279,394	-		PFLU_RS14675	0.65	-1.7
3,279,394	-		PFLU_RS14675	0.65	+1.3
3,279,511	+		PFLU_RS14675	0.81	-0.3
3,279,512	-		PFLU_RS14675	0.82	+0.2
3,279,512	-		PFLU_RS14675	0.82	-1.0
3,279,512	-		PFLU_RS14675	0.82	+2.6
3,279,512	-		PFLU_RS14675	0.82	-0.7
3,279,518	+		PFLU_RS14675	0.82	-2.2
3,279,518	+		PFLU_RS14675	0.82	+1.3
3,279,518	+		PFLU_RS14675	0.82	+1.6
3,279,518	+		PFLU_RS14675	0.82	+1.1
3,279,519	-		PFLU_RS14675	0.83	-0.7
3,279,519	-		PFLU_RS14675	0.83	-1.2
3,279,519	-		PFLU_RS14675	0.83	-0.1
3,279,519	-		PFLU_RS14675	0.83	+0.7
3,279,587	+				+0.3
3,279,587	+				-2.3
3,279,588	-				+0.1
3,279,588	-				+0.6
3,279,621	+				+0.5
3,279,673	+				-0.3
3,279,674	-				+1.3
3,279,691	+				+1.1
3,279,691	+				-1.0
3,279,692	-				-1.1
3,279,697	+				+1.2
3,279,697	+				-0.2
3,279,697	+				-1.2
3,279,697	+				-0.2
3,279,698	-				+0.4
3,279,731	+				+1.4
3,279,731	+				+1.4
3,279,732	-				+1.2
3,279,809	-		PFLU_RS14680	0.38	+0.8
3,279,894	-		PFLU_RS14680	0.78	+1.3
3,279,894	-		PFLU_RS14680	0.78	+1.0
3,279,908	+		PFLU_RS14680	0.85	+1.1
3,279,928	+				-0.1
3,279,929	-				-0.2
3,279,929	-				-0.7
3,279,929	-				-0.2
3,279,940	-				+0.4
3,279,940	-				-0.4
3,280,008	+				-1.2
3,280,008	+				+1.0
3,280,008	+				+1.8
3,280,009	-				-0.7
3,280,009	-				+0.2
3,280,009	-				+0.4
3,280,009	-				-1.2
3,280,009	-				-0.4
3,280,104	+		PFLU_RS14685	0.11	-0.7
3,280,104	+		PFLU_RS14685	0.11	+0.7
3,280,105	-		PFLU_RS14685	0.11	+1.5
3,280,182	+		PFLU_RS14685	0.17	+0.3
3,280,182	+		PFLU_RS14685	0.17	-2.4
3,280,182	+		PFLU_RS14685	0.17	+1.0
3,280,182	+		PFLU_RS14685	0.17	+0.4
3,280,182	+		PFLU_RS14685	0.17	-0.5
3,280,182	+		PFLU_RS14685	0.17	+1.3
3,280,182	+		PFLU_RS14685	0.17	-0.2
3,280,183	-		PFLU_RS14685	0.17	-0.2
3,280,183	-		PFLU_RS14685	0.17	-0.0
3,280,183	-		PFLU_RS14685	0.17	-0.0
3,280,183	-		PFLU_RS14685	0.17	+0.7
3,280,183	-		PFLU_RS14685	0.17	-0.2
3,280,183	-		PFLU_RS14685	0.17	+0.1
3,280,183	-		PFLU_RS14685	0.17	+0.3
3,280,183	-		PFLU_RS14685	0.17	+0.3
3,280,183	-		PFLU_RS14685	0.17	-1.5
3,280,278	+		PFLU_RS14685	0.24	-0.5
3,280,278	+		PFLU_RS14685	0.24	-0.5
3,280,278	+		PFLU_RS14685	0.24	+0.8
3,280,278	+		PFLU_RS14685	0.24	+1.1
3,280,354	-		PFLU_RS14685	0.29	+0.4
3,280,411	+		PFLU_RS14685	0.33	-1.1
3,280,411	+		PFLU_RS14685	0.33	+0.8
3,280,412	-		PFLU_RS14685	0.33	+0.7
3,280,412	-		PFLU_RS14685	0.33	+0.3
3,280,416	+		PFLU_RS14685	0.33	+1.0
3,280,416	+		PFLU_RS14685	0.33	-0.9
3,280,416	+		PFLU_RS14685	0.33	+1.8
3,280,416	+		PFLU_RS14685	0.33	+0.9
3,280,417	-		PFLU_RS14685	0.33	+0.3
3,280,584	+		PFLU_RS14685	0.45	-0.2
3,280,585	-		PFLU_RS14685	0.45	+0.6
3,280,585	-		PFLU_RS14685	0.45	+0.8
3,280,612	+		PFLU_RS14685	0.47	-0.7
3,280,612	+		PFLU_RS14685	0.47	-0.2
3,280,612	+		PFLU_RS14685	0.47	-0.5
3,280,612	+		PFLU_RS14685	0.47	+0.6
3,280,612	+		PFLU_RS14685	0.47	+0.8
3,280,612	+		PFLU_RS14685	0.47	+1.8
3,280,613	-		PFLU_RS14685	0.47	-0.1
3,280,613	-		PFLU_RS14685	0.47	+1.3
3,280,613	-		PFLU_RS14685	0.47	+1.0
3,280,613	-		PFLU_RS14685	0.47	+1.5
3,280,614	+		PFLU_RS14685	0.47	-1.0
3,280,614	+		PFLU_RS14685	0.47	-0.5
3,280,614	+		PFLU_RS14685	0.47	-2.0
3,280,614	+		PFLU_RS14685	0.47	+1.4
3,280,614	+		PFLU_RS14685	0.47	-2.2
3,280,614	+		PFLU_RS14685	0.47	+0.7
3,280,614	+		PFLU_RS14685	0.47	-0.3
3,280,614	+		PFLU_RS14685	0.47	-2.2
3,280,614	+		PFLU_RS14685	0.47	+0.4
3,280,614	+		PFLU_RS14685	0.47	+0.5
3,280,615	-		PFLU_RS14685	0.47	-1.2
3,280,615	-		PFLU_RS14685	0.47	+0.8
3,280,615	-		PFLU_RS14685	0.47	+0.0
3,280,615	-		PFLU_RS14685	0.47	+0.8
3,280,615	-		PFLU_RS14685	0.47	-1.2
3,280,615	-		PFLU_RS14685	0.47	+1.0
3,280,615	-		PFLU_RS14685	0.47	+0.3
3,280,615	-		PFLU_RS14685	0.47	+0.4
3,280,615	-		PFLU_RS14685	0.47	-1.5
3,280,615	-		PFLU_RS14685	0.47	-3.0
3,280,615	-		PFLU_RS14685	0.47	+0.8
3,280,615	-		PFLU_RS14685	0.47	-0.9
3,280,615	-		PFLU_RS14685	0.47	-1.1
3,280,615	-		PFLU_RS14685	0.47	+3.6
3,280,615	-		PFLU_RS14685	0.47	-2.0
3,280,615	-		PFLU_RS14685	0.47	+1.3
3,280,615	-		PFLU_RS14685	0.47	+1.7
3,280,615	-		PFLU_RS14685	0.47	-0.2
3,280,615	-		PFLU_RS14685	0.47	+0.2
3,280,657	-		PFLU_RS14685	0.50	+1.4
3,280,662	+		PFLU_RS14685	0.50	+1.1
3,280,663	-		PFLU_RS14685	0.51	+0.5
3,280,663	-		PFLU_RS14685	0.51	-0.8
3,280,663	-		PFLU_RS14685	0.51	+1.5
3,280,663	-		PFLU_RS14685	0.51	+1.6
3,280,663	-		PFLU_RS14685	0.51	-2.2
3,280,695	+		PFLU_RS14685	0.53	-2.0
3,280,695	+		PFLU_RS14685	0.53	-0.7
3,280,695	+		PFLU_RS14685	0.53	-0.0
3,280,695	+		PFLU_RS14685	0.53	+0.4
3,280,695	+		PFLU_RS14685	0.53	-0.4
3,280,696	-		PFLU_RS14685	0.53	+0.7
3,280,696	-		PFLU_RS14685	0.53	+0.4
3,280,696	-		PFLU_RS14685	0.53	+0.1
3,280,696	-		PFLU_RS14685	0.53	+0.8
3,280,698	+		PFLU_RS14685	0.53	-0.7
3,280,698	+		PFLU_RS14685	0.53	-0.7
3,280,698	+		PFLU_RS14685	0.53	+0.1
3,280,698	+		PFLU_RS14685	0.53	-0.2
3,280,698	+		PFLU_RS14685	0.53	-1.7
3,280,698	+		PFLU_RS14685	0.53	-0.2
3,280,698	+		PFLU_RS14685	0.53	+0.5
3,280,698	+		PFLU_RS14685	0.53	-0.1
3,280,698	+		PFLU_RS14685	0.53	-0.2
3,280,698	+		PFLU_RS14685	0.53	+0.3
3,280,698	+		PFLU_RS14685	0.53	-1.2
3,280,698	+		PFLU_RS14685	0.53	+0.6
3,280,698	+		PFLU_RS14685	0.53	-1.3
3,280,699	-		PFLU_RS14685	0.53	+2.2
3,280,699	-		PFLU_RS14685	0.53	+0.4
3,280,699	-		PFLU_RS14685	0.53	+0.7
3,280,699	-		PFLU_RS14685	0.53	-1.0
3,280,699	-		PFLU_RS14685	0.53	+0.4
3,280,699	-		PFLU_RS14685	0.53	+1.1
3,280,699	-		PFLU_RS14685	0.53	-1.5
3,280,699	-		PFLU_RS14685	0.53	+1.2
3,280,699	-		PFLU_RS14685	0.53	+0.7
3,280,699	-		PFLU_RS14685	0.53	+0.4
3,280,699	-		PFLU_RS14685	0.53	+0.3
3,280,699	-		PFLU_RS14685	0.53	+1.4
3,280,699	-		PFLU_RS14685	0.53	+0.6
3,280,699	-		PFLU_RS14685	0.53	-0.7
3,280,699	-		PFLU_RS14685	0.53	-0.0
3,280,753	-		PFLU_RS14685	0.57	-0.2
3,280,788	+		PFLU_RS14685	0.59	-0.2
3,280,788	+		PFLU_RS14685	0.59	-0.6
3,280,789	-		PFLU_RS14685	0.59	-0.2
3,280,893	+		PFLU_RS14685	0.67	+0.4
3,280,893	+		PFLU_RS14685	0.67	-0.6
3,280,894	-		PFLU_RS14685	0.67	-0.2
3,280,894	-		PFLU_RS14685	0.67	-1.2
3,280,894	-		PFLU_RS14685	0.67	+0.1
3,280,894	-		PFLU_RS14685	0.67	-0.6
3,280,894	-		PFLU_RS14685	0.67	+2.0
3,280,894	-		PFLU_RS14685	0.67	-2.2
3,280,945	-		PFLU_RS14685	0.70	+1.1
3,280,945	-		PFLU_RS14685	0.70	-0.3
3,280,945	-		PFLU_RS14685	0.70	+0.2
3,280,998	+		PFLU_RS14685	0.74	-2.0
3,280,999	-		PFLU_RS14685	0.74	+1.7
3,280,999	-		PFLU_RS14685	0.74	-0.5
3,281,014	+		PFLU_RS14685	0.75	-2.0
3,281,014	+		PFLU_RS14685	0.75	-1.0
3,281,014	+		PFLU_RS14685	0.75	-1.0
3,281,014	+		PFLU_RS14685	0.75	-1.7
3,281,014	+		PFLU_RS14685	0.75	-0.9
3,281,014	+		PFLU_RS14685	0.75	-0.2
3,281,015	-		PFLU_RS14685	0.75	+1.2
3,281,015	-		PFLU_RS14685	0.75	+0.3
3,281,015	-		PFLU_RS14685	0.75	+0.0
3,281,074	+		PFLU_RS14685	0.79	+0.1
3,281,075	-		PFLU_RS14685	0.79	-1.5
3,281,130	+		PFLU_RS14685	0.83	-0.0
3,281,130	+		PFLU_RS14685	0.83	+0.1
3,281,131	-		PFLU_RS14685	0.83	+1.0
3,281,133	+		PFLU_RS14685	0.83	+1.0
3,281,133	+		PFLU_RS14685	0.83	+0.6
3,281,133	+		PFLU_RS14685	0.83	+1.3
3,281,133	+		PFLU_RS14685	0.83	-3.5
3,281,134	-		PFLU_RS14685	0.84	-1.4
3,281,134	-		PFLU_RS14685	0.84	+1.2
3,281,134	-		PFLU_RS14685	0.84	-0.5
3,281,134	-		PFLU_RS14685	0.84	+0.0
3,281,134	-		PFLU_RS14685	0.84	+0.3
3,281,312	+				+1.0
3,281,332	+				-0.5
3,281,332	+				-0.0
3,281,333	-				+0.2
3,281,333	-				-0.4
3,281,333	-				-1.5
3,281,333	-				-0.1
3,281,333	-				-0.0
3,281,333	-				+0.8
3,281,334	+				-1.2
3,281,334	+				-0.0
3,281,334	+				+0.8
3,281,334	+				-2.3
3,281,334	+				-3.5
3,281,334	+				-1.4
3,281,334	+				-1.3
3,281,334	+				-0.7
3,281,334	+				-0.2
3,281,335	-				-0.2
3,281,335	-				+0.1
3,281,335	-				-0.5
3,281,335	-				-1.6
3,281,335	-				+0.7
3,281,335	-				+2.4
3,281,335	-				+0.3
3,281,335	-				+0.8
3,281,335	-				-1.8
3,281,335	-				-2.1
3,281,335	-				+0.6
3,281,338	+				+0.5
3,281,338	+				-0.7
3,281,338	+				-1.0
3,281,338	+				-0.2
3,281,338	+				+1.3
3,281,338	+				-0.2
3,281,338	+				-1.3
3,281,339	-				+0.6
3,281,339	-				+0.1
3,281,339	-				+1.5
3,281,339	-				-0.1
3,281,339	-				-0.5
3,281,339	-				-2.2
3,281,339	-				-0.2
3,281,339	-				-1.2
3,281,339	-				-0.5
3,281,339	-				+0.0
3,281,339	-				-0.7
3,281,340	+				-1.0
3,281,340	+				-0.7
3,281,341	-				-1.0
3,281,341	-				-0.2
3,281,341	-				-0.2
3,281,341	-				+1.4
3,281,341	-				+1.2
3,281,341	-				-0.3
3,281,341	-				+1.2
3,281,341	-				-0.0
3,281,341	-				-0.9
3,281,438	+				-0.3
3,281,439	-				-0.5
3,281,446	+				+1.6
3,281,447	-				-2.2
3,281,484	-				+0.3
3,281,537	+				-0.7
3,281,537	+				+0.6
3,281,538	-				+1.4
3,281,538	-				-0.0
3,281,541	+				-0.2
3,281,541	+				+1.3
3,281,541	+				+1.7
3,281,542	-				-1.1
3,281,542	-				+0.8
3,281,542	-				+0.1
3,281,542	-				-0.7
3,281,578	+				+0.4
3,281,578	+				+0.2
3,281,578	+				-1.2
3,281,578	+				-2.2
3,281,578	+				+0.8
3,281,578	+				-0.6
3,281,579	-				+0.7
3,281,579	-				-1.2
3,281,579	-				+0.6
3,281,607	+				-0.6
3,281,608	-				+0.6
3,281,608	-				-0.6
3,281,754	+		PFLU_RS14690	0.38	-0.2
3,281,754	+		PFLU_RS14690	0.38	+1.4
3,281,754	+		PFLU_RS14690	0.38	+0.1
3,281,754	+		PFLU_RS14690	0.38	+0.3
3,281,754	+		PFLU_RS14690	0.38	-1.2
3,281,755	-		PFLU_RS14690	0.38	-0.2
3,281,755	-		PFLU_RS14690	0.38	-1.3
3,281,755	-		PFLU_RS14690	0.38	+0.4
3,281,755	-		PFLU_RS14690	0.38	-2.3
3,281,819	-		PFLU_RS14690	0.51	+0.7
3,281,819	-		PFLU_RS14690	0.51	-0.4
3,282,134	+				-2.2
3,282,134	+				+0.5
3,282,135	-				-0.7
3,282,159	-				+1.6
3,282,159	-				+0.2
3,282,160	+				-0.8
3,282,161	-				-0.0
3,282,161	-				-0.6
3,282,161	-				+0.8
3,282,164	+				-1.2
3,282,164	+				-2.6
3,282,164	+				-1.3
3,282,164	+				-1.0
3,282,164	+				+0.6
3,282,164	+				-1.3
3,282,164	+				-0.1
3,282,164	+				-1.7
3,282,164	+				+0.1
3,282,165	-				+1.1
3,282,165	-				+0.3
3,282,165	-				-0.1
3,282,165	-				-0.3
3,282,165	-				-0.6
3,282,165	-				+0.7
3,282,165	-				+1.0
3,282,165	-				-0.5
3,282,165	-				+0.5
3,282,165	-				+0.5
3,282,165	-				+1.5
3,282,165	-				+0.1
3,282,165	-				-0.7
3,282,213	+				+1.1
3,282,214	-				+0.2
3,282,214	-				-0.7
3,282,214	-				+1.2
3,282,214	-				+0.3
3,282,214	-				+1.2
3,282,214	-				-1.2
3,282,214	-				+0.1
3,282,214	-				+0.4
3,282,219	+				+0.3
3,282,220	-				+0.5
3,282,294	-		PFLU_RS14695	0.13	-2.3
3,282,294	-		PFLU_RS14695	0.13	-0.7
3,282,294	-		PFLU_RS14695	0.13	+0.7
3,282,314	+		PFLU_RS14695	0.16	-0.6
3,282,315	-		PFLU_RS14695	0.16	-0.1
3,282,315	-		PFLU_RS14695	0.16	+1.1